Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g10260 | OGI:06014910 | 11/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:5264603-5265958 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATTTAATATCTTCAGAAAATGCGGCCTTCTGTCTCTCACACCGATTGTTGTTCCGTTCGCAATGGTAGCGTAGCGTGGCCATCCTCCGAGTTCCGATGAATCCTATCCGTCACCAATGAATAAGCTGCTACGAACAAATAAACGCGACAGTACATCATGAGCTCTCTATAAGTACCGTATTTCCTCCGTTTCACGGAAAAAAACTAACTTTTCACTATGAATTTGGATATAGACTATCTATATTTATAGCTGAAGATTAGCTTTTTTTTTAACGGATGTAGTACTGTGAGCTAATGAGACAAGTCTATTGGAGGAGTAGGTTGTACTTCAGAAGTTACTGCATAGAAAAAGTACAAATTATCCCTCCTCAAACTATCGCGATCAACTGAATTACCCCCTAAACCAAACAACCGGACATTCTCCATCTCTAGCTACACAAATCGGACGAATTACCCCCAATTCAATCCACAGTGGTTCTGGTCTACGTGACGTATGCGTGGCAGTACAGTCAACATTTTATTTATAAAAAAATATAGGACCCACACACTCTTCCTCTCTCTCTCTTCTCTCTCTCACAGGTCGGCGGCGGCGGGAGACACGGAGCGGAGGCGGCGGGTGACGCGGAGGCTGCGACAGCGGGGGATGAGGAAGACGACGACGAGGATGGTGACGGAGAAGTGGTCGGCGGTGGGTGATGCGGAGGATGGCGGCAGGGGACTCCACCGGCGCCGCCGCCAGGGAGGAACCGCTCCGGCAGGAACACGTCTAGGCGGTCCGGCCACGACGTCGGGTTGCGCGCGATGGCACACACGTTCACCAGTACATGCGTGCCGACAGGGACGTCGTTGCAAGCAGCCACCGTGTCCTCCATGGCGTGGTGCGGGACGAGCAGCGGGCCCACCGGGTGCAGCCGCAGCGCCCCCTTCACGACGGCGTCAACGTAGGGGAGGTCCGGCAGGTCGCTCTCCGCCACCCACCGCGCCCGCCCCACCACGCGGTCAAGCTCGTCGGTGGCGGTGGCGATGGCGTCGGGGCAGCGGAGGAGCTCCGCCATCGCCCACTCCATTGTCACCGCGCTACTCTCCGTGCGCCGGAACACCTCCCCATCAGCGCTGCCGTAGACGCCCGACCACTTCTCGCCGACCGACATGTGGAGGATGTTCCGCAGCGTCGCGTTCACGAGGCACTCGCGCACGGCAACGGCGTGGCTGGCACATCCAAATAGGTTGCGAACGAGCGCCCGGATCTCCTCTGCACGGATGTGCTCGTAGGAGTCGACGCTGTCAGAGACTGAGAGAGAGAAGAGAGAGAGGAAGAGTGAGACAAAGAGTAAGAGAGAGGAAGAGTATGACAT
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| CDS seq | ATGTCATACTCTTCCTCTCTCTTACTCTTTGTCTCACTCTTCCTCTCTCTCTTCTCTCTCTCAGTCTCTGACAGCGTCGACTCCTACGAGCACATCCGTGCAGAGGAGATCCGGGCGCTCGTTCGCAACCTATTTGGATGTGCCAGCCACGCCGTTGCCGTGCGCGAGTGCCTCGTGAACGCGACGCTGCGGAACATCCTCCACATGTCGGTCGGCGAGAAGTGGTCGGGCGTCTACGGCAGCGCTGATGGGGAGGTGTTCCGGCGCACGGAGAGTAGCGCGGTGACAATGGAGTGGGCGATGGCGGAGCTCCTCCGCTGCCCCGACGCCATCGCCACCGCCACCGACGAGCTTGACCGCGTGGTGGGGCGGGCGCGGTGGGTGGCGGAGAGCGACCTGCCGGACCTCCCCTACGTTGACGCCGTCGTGAAGGGGGCGCTGCGGCTGCACCCGGTGGGCCCGCTGCTCGTCCCGCACCACGCCATGGAGGACACGGTGGCTGCTTGCAACGACGTCCCTGTCGGCACGCATGTACTGGTGAACGTGTGTGCCATCGCGCGCAACCCGACGTCGTGGCCGGACCGCCTAGACGTGTTCCTGCCGGAGCGGTTCCTCCCTGGCGGCGGCGCCGGATTCATCGGAACTCGGAGGATGGCCACGCTACGCTACCATTGCGAACGGAACAACAATCGGTGTGAGAGACAGAAGGCCGCATTTTCTGAAGATATTAAATAA
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| Protein seq | MSYSSSLLLFVSLFLSLFSLSVSDSVDSYEHIRAEEIRALVRNLFGCASHAVAVRECLVNATLRNILHMSVGEKWSGVYGSADGEVFRRTESSAVTMEWAMAELLRCPDAIATATDELDRVVGRARWVAESDLPDLPYVDAVVKGALRLHPVGPLLVPHHAMEDTVAACNDVPVGTHVLVNVCAIARNPTSWPDRLDVFLPERFLPGGGAGFIGTRRMATLRYHCERNNNRCERQKAAFSEDIK |
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| Function | Trimethyltridecatetraene synthase [UniProtKB/Swiss-Prot:A0A1D6F9Y9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g10260 | LOC_Os06g10260.1 | Chr06 | 5264603 | 5265958 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCATACTCTTCCTCTCTCTTACTCTTTGTCTCACTCTTCCTCTCTCTCTTCTCTCTCTCAGTCTCTGACAGCGTCGACTCCTACGAGCACATCCGTGCAGAGGAGATCCGGGCGCTCGTTCGCAACCTATTTGGATGTGCCAGCCACGCCGTTGCCGTGCGCGAGTGCCTCGTGAACGCGACGCTGCGGAACATCCTCCACATGTCGGTCGGCGAGAAGTGGTCGGGCGTCTACGGCAGCGCTGATGGGGAGGTGTTCCGGCGCACGGAGAGTAGCGCGGTGACAATGGAGTGGGCGATGGCGGAGCTCCTCCGCTGCCCCGACGCCATCGCCACCGCCACCGACGAGCTTGACCGCGTGGTGGGGCGGGCGCGGTGGGTGGCGGAGAGCGACCTGCCGGACCTCCCCTACGTTGACGCCGTCGTGAAGGGGGCGCTGCGGCTGCACCCGGTGGGCCCGCTGCTCGTCCCGCACCACGCCATGGAGGACACGGTGGCTGCTTGCAACGACGTCCCTGTCGGCACGCATGTACTGGTGAACGTGTGTGCCATCGCGCGCAACCCGACGTCGTGGCCGGACCGCCTAGACGTGTTCCTGCCGGAGCGGTTCCTCCCTGGCGGCGGCGCCGGATTCATCGGAACTCGGAGGATGGCCACGCTACGCTACCATTGCGAACGGAACAACAATCGGTGTGAGAGACAGAAGGCCGCATTTTCTGAAGATATTAAATAA
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| Protein seq | MSYSSSLLLFVSLFLSLFSLSVSDSVDSYEHIRAEEIRALVRNLFGCASHAVAVRECLVNATLRNILHMSVGEKWSGVYGSADGEVFRRTESSAVTMEWAMAELLRCPDAIATATDELDRVVGRARWVAESDLPDLPYVDAVVKGALRLHPVGPLLVPHHAMEDTVAACNDVPVGTHVLVNVCAIARNPTSWPDRLDVFLPERFLPGGGAGFIGTRRMATLRYHCERNNNRCERQKAAFSEDIK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0204100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0204100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0013690 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0011970 | SBH | 0.0 | 2.416000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0013630 | SBH | 0.0 | 0.0 | 0.124047 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0012060 | SBH | 0.000000 | 0.261945 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000070 | SBH | 0.000000 | 0.0 | 1.481326 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0088000 | RBH | 0.125775 | 0 | 0.3155965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0000060 | SBH | 0.120905 | 0.0 | 0.239384 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0087400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0000070 | SBH | 0.041422 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0000070 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0000070 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000060 | SBH | 1.332890 | 0.000000 | 0.457675 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0000060 | SBH | 0.318000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G000060 | SBH | 0.0 | 0.0 | 0.443554 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000070 | SBH | 0.0 | 0.0 | 1.520447 |
