Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g06980 | OGI:06009700 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:3314111-3315452 | ||||||||
| Gene Symbol | ROMT-16, ROMT16, COA1, CCoAOMT-1, OsROMT-16, OsROMT16, OsCOA1, OsCCoAOMT-1 | ||||||||||
| DNA seq | GTCGGCGAAGTCAATCCGGCGATCCCCGGCGAGCGAGAGATCGAAGCAAGCTGCTACACAGATCTCACGACATGGCCGAGGCGGCGTCGGCGGCGGCGGCGGCGACGACGGAGCAGGCGAATGGGAGCAGCGGCGGCGAGCAGAAGACGCGGCACTCGGAGGTCGGCCACAAGAGCCTCCTCAAGAGCGACGATCTCTACCAGGTAACCCGCCGTCTCCGGCCATCCCCTCCTCGCCGGAAAACCTCCGCCGCCGTGGCTGACCTTGCCTGACTGGCTGACTCGGTGCTTCGTTTCCGCAGTACATCCTGGAGACGAGCGTGTACCCGCGCGAGCACGAGTGCATGAAGGAGCTCCGCGAGGTCACCGCCAACCACCCATGGTACGCCACGAATCCCCTCCTCCTCCTCTTGGGCCCCGAATCGGAGCTCGGCGACATCGATTTGATTCGATTGGGAGGGATCGATGTTGTTCTTGCAGGAACCTGATGACGACGTCGGCGGACGAGGGGCAATTCCTGAACCTGCTGCTGAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCCCTCCTCGCCACCGCCCTCGCCATCCCCGACGACGGCACGGTCAGCAACACGCAAATCCCCCATCTCTTCCATCGCAGATCTGGCAAGAAATCCCCAATCGATTGACGTCCATCCCTCTGCTAACTAATGCAGATCTTGGCGATGGACATCAACCGGGAGAACTACGAGCTGGGGCTCCCGTCGATCGAGAAGGCGGGAGTGGCGCACAAGATCGACTTCCGGGAGGGACCCGCGCTGCCGGTGCTGGACCAGCTGGTGGAGGAGGAGGGCAACCATGGGTCGTTCGACTTCGTGTTCGTCGACGCCGACAAGGACAACTACCTCAACTACCACGAGCGGCTGATGAAGCTGGTCAAGGTCGGCGGCCTCGTCGGCTACGACAACACGCTCTGGAACGGCTCCGTCGTGCTCCCCGCCGACGCCCCCATGCGCAAGTACATCCGCTACTACCGCGACTTCGTGCTCGAGCTCAACAAGGCCCTCGCCGCCGACCACCGCGTCGAGATCTGCCAGCTCCCCGTCGGCGACGGCATCACCCTCTGCCGCCGCGTCAAGTGAGCCCGCCGCCGCCGCGAGTGCGACTCCGGCCGATGCCCAAGAACTAGTCATTTTAAATTTATAAATTATAACTAAATTGTATAATTTTTGCCTTTTTTTTTTAATTTGCAAGCTACTGGAAAATGTTATTTAATATATGTATAAATGTCGAGACAATAATATTATTGCATTATAAATTGACCTGGTTTTTGTTAGCTTT
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| CDS seq | ATGGCCGAGGCGGCGTCGGCGGCGGCGGCGGCGACGACGGAGCAGGCGAATGGGAGCAGCGGCGGCGAGCAGAAGACGCGGCACTCGGAGGTCGGCCACAAGAGCCTCCTCAAGAGCGACGATCTCTACCAGTACATCCTGGAGACGAGCGTGTACCCGCGCGAGCACGAGTGCATGAAGGAGCTCCGCGAGGTCACCGCCAACCACCCATGGAACCTGATGACGACGTCGGCGGACGAGGGGCAATTCCTGAACCTGCTGCTGAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCCCTCCTCGCCACCGCCCTCGCCATCCCCGACGACGGCACGATCTTGGCGATGGACATCAACCGGGAGAACTACGAGCTGGGGCTCCCGTCGATCGAGAAGGCGGGAGTGGCGCACAAGATCGACTTCCGGGAGGGACCCGCGCTGCCGGTGCTGGACCAGCTGGTGGAGGAGGAGGGCAACCATGGGTCGTTCGACTTCGTGTTCGTCGACGCCGACAAGGACAACTACCTCAACTACCACGAGCGGCTGATGAAGCTGGTCAAGGTCGGCGGCCTCGTCGGCTACGACAACACGCTCTGGAACGGCTCCGTCGTGCTCCCCGCCGACGCCCCCATGCGCAAGTACATCCGCTACTACCGCGACTTCGTGCTCGAGCTCAACAAGGCCCTCGCCGCCGACCACCGCGTCGAGATCTGCCAGCTCCCCGTCGGCGACGGCATCACCCTCTGCCGCCGCGTCAAGTGA
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| Protein seq | MAEAASAAAAATTEQANGSSGGEQKTRHSEVGHKSLLKSDDLYQYILETSVYPREHECMKELREVTANHPWNLMTTSADEGQFLNLLLKLIGAKKTMEIGVYTGYSLLATALAIPDDGTILAMDINRENYELGLPSIEKAGVAHKIDFREGPALPVLDQLVEEEGNHGSFDFVFVDADKDNYLNYHERLMKLVKVGGLVGYDNTLWNGSVVLPADAPMRKYIRYYRDFVLELNKALAADHRVEICQLPVGDGITLCRRVK |
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| Function | Caffeoyl-CoA O-methyltransferase 2 [UniProtKB/Swiss-Prot:Q9XGD5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g06980 | LOC_Os06g06980.1 | Chr06 | 3314111 | 3315452 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCGAGGCGGCGTCGGCGGCGGCGGCGGCGACGACGGAGCAGGCGAATGGGAGCAGCGGCGGCGAGCAGAAGACGCGGCACTCGGAGGTCGGCCACAAGAGCCTCCTCAAGAGCGACGATCTCTACCAGTACATCCTGGAGACGAGCGTGTACCCGCGCGAGCACGAGTGCATGAAGGAGCTCCGCGAGGTCACCGCCAACCACCCATGGAACCTGATGACGACGTCGGCGGACGAGGGGCAATTCCTGAACCTGCTGCTGAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCCCTCCTCGCCACCGCCCTCGCCATCCCCGACGACGGCACGATCTTGGCGATGGACATCAACCGGGAGAACTACGAGCTGGGGCTCCCGTCGATCGAGAAGGCGGGAGTGGCGCACAAGATCGACTTCCGGGAGGGACCCGCGCTGCCGGTGCTGGACCAGCTGGTGGAGGAGGAGGGCAACCATGGGTCGTTCGACTTCGTGTTCGTCGACGCCGACAAGGACAACTACCTCAACTACCACGAGCGGCTGATGAAGCTGGTCAAGGTCGGCGGCCTCGTCGGCTACGACAACACGCTCTGGAACGGCTCCGTCGTGCTCCCCGCCGACGCCCCCATGCGCAAGTACATCCGCTACTACCGCGACTTCGTGCTCGAGCTCAACAAGGCCCTCGCCGCCGACCACCGCGTCGAGATCTGCCAGCTCCCCGTCGGCGACGGCATCACCCTCTGCCGCCGCGTCAAGTGA
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| Protein seq | MAEAASAAAAATTEQANGSSGGEQKTRHSEVGHKSLLKSDDLYQYILETSVYPREHECMKELREVTANHPWNLMTTSADEGQFLNLLLKLIGAKKTMEIGVYTGYSLLATALAIPDDGTILAMDINRENYELGLPSIEKAGVAHKIDFREGPALPVLDQLVEEEGNHGSFDFVFVDADKDNYLNYHERLMKLVKVGGLVGYDNTLWNGSVVLPADAPMRKYIRYYRDFVLELNKALAADHRVEICQLPVGDGITLCRRVK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g06980 | LOC_Os06g06980.3 | Chr06 | 3314111 | 3315452 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAACCTGATGACGACGTCGGCGGACGAGGGGCAATTCCTGAACCTGCTGCTGAAGCTCATCGGCGCCAAGAAGACCATGGAGATCGGCGTCTACACCGGCTACTCCCTCCTCGCCACCGCCCTCGCCATCCCCGACGACGGCACGATCTTGGCGATGGACATCAACCGGGAGAACTACGAGCTGGGGCTCCCGTCGATCGAGAAGGCGGGAGTGGCGCACAAGATCGACTTCCGGGAGGGACCCGCGCTGCCGGTGCTGGACCAGCTGGTGGAGGAGGAGGGCAACCATGGGTCGTTCGACTTCGTGTTCGTCGACGCCGACAAGGACAACTACCTCAACTACCACGAGCGGCTGATGAAGCTGGTCAAGGTCGGCGGCCTCGTCGGCTACGACAACACGCTCTGGAACGGCTCCGTCGTGCTCCCCGCCGACGCCCCCATGCGCAAGTACATCCGCTACTACCGCGACTTCGTGCTCGAGCTCAACAAGGCCCTCGCCGCCGACCACCGCGTCGAGATCTGCCAGCTCCCCGTCGGCGACGGCATCACCCTCTGCCGCCGCGTCAAGTGAGCCCGCCGCCGCCGCGAGTGCGACTCCGGCCGATGCCCAAGAACTAG
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| Protein seq | MEPDDDVGGRGAIPEPAAEAHRRQEDHGDRRLHRLLPPRHRPRHPRRRHDLGDGHQPGELRAGAPVDREGGSGAQDRLPGGTRAAGAGPAGGGGGQPWVVRLRVRRRRQGQLPQLPRAADEAGQGRRPRRLRQHALERLRRAPRRRPHAQVHPLLPRLRARAQQGPRRRPPRRDLPAPRRRRHHPLPPRQVSPPPPRVRLRPMPKN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.251671 | 3.705131 | 7.082372 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0165800 | RBH | 6.362070 | 5.480767 | 26.897448 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0165800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0004840 | RBH | 1.089726 | 42.615211 | 42.629807 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0004750 | RBH | 0.535009 | 0.656774 | 13.633515 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0004690 | RBH | 3.788918 | 22.120270 | 46.188580 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0004880 | RBH | 0.412363 | 0.698792 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0004770 | RBH | 26.615107 | 28.611141 | 89.588226 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0057400 | RBH | 39.1278515 | 10.842954 | 12.1778625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0004630 | RBH | 0.613752 | 1.153724 | 4.148111 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0057200 | RBH | 51.7099075 | 14.1004505 | 36.6979455 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0004890 | RBH | 0.149968 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0004730 | RBH | 3.303524 | 26.591187 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0004740 | RBH | 24.461479 | 27.838699 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0004770 | RBH | 0.000000 | 0.000000 | 5.539855 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0004640 | RBH | 0.639991 | 20.995609 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G004520 | RBH | 0.766254 | 8.045024 | 23.553335 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0004800 | RBH | 2.803184 | 7.174315 | 39.292431 |
