Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g06950 | OGI:06009630 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:3301364-3303145 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAATCAGGCCGACCCGGCGGCACGACGAGCCGCGCGGCGTCGAGGCGCGGGCTCAGCCGGAGCGCGACGCCCCTCATGTCCTCCATGCCGCGCTCGTACCCCTCCAGCGCGTGCGCCGCGAGCTCCCGCTTGTGCTCCTCGGACAGCACGTACTCCTGCACCGCCGCCGCCTTCGCCGCCGCGAGCCCGCGCTGCGCCTTCTCCTCGACCTCCTTCCGCATGGCGTCCGCCTCCGCGGCGGCGTCGCGCTCCCGCGCGCGCAGCCTCTCCTCCAGCTCCAGCGCGTAGTCCAGCGAGAACGTCGCGTAGTTCGCCGCCTGCGACATGAGAACGAGTGAACGCGGCGGCGGCGACGACGACGACGAGCATCGCATCAATGGCGGGATGTGGATAGCGAAACCTGGAGCAGCGTGACGTAGCTCGACGCGACGACGTCGGAGGGCTTCGCCGCCGGGAACTGGCGCTCCCGCGACGGCGTGACGATGCCCTGAAGCAGCTGCCGCGCGGCCTTCCAGTCGGCCGTGTCGCCGTCGTGCTTGTCGGGCACGTGCCCCGGCGTACGATCATGGTCGCTCGCCGTCGGTTTCTGCGCGGAGAACATAGGCTTCCGATCTTGGTCGCTCGCCGTCGGCTTCTGCGCGGAGAATCCCGGCGGCGGGGAAGACAGGCCGGAGGCCGAGCACGAGAAGCCATGGGGAGTAGGTGGCGTCCCGTCTTTCGCATTGGCCTCTGCTTCAAACTTCCTCTTCTTCACCGACGACGGCGAACACCGCGGCGTGTCGCTCTCCGGCTCGGTCTTCACCTTCTGCGCCGTCGCCGGTGCCTGCGCCGCGGCCGCCTTCTCCGCCCGCATGCTCATCATCATCTCAAAGACTGACGGGTCCATCCCTGCAGGAACACGACGGGAGTTATAAATTCGTTAATGTCGCCGGAGCCAGGAAGGTGTTCGACACTTTACCTTCGGCCCTAGTAGAACGAGAAGGCGGCGGCGGCTGCGGCGACGCGGCGGCGGCGGGGTTGGAGGAGAATGCGGCGGCGAGGTTGCTCTCGGTGAGATACGTCCTGAGATCAACCGCGGCGCGGTGCTTGTCCAGAAGCTTCGCCGCCCATTTCTCCTCCTCACCGGTGAGCACCGGATCGGCGATGGAGCTCTTGGACGGCGGCCCACCCCACCGCACCTGGCACGGCCACGGCGCCGACGACGACAAGAAGAAGAAACCTTCCTTCCAACCTTTGAGGTGTGTGGGCATCCCCGTGAAGAGCAACCCGACGGTGTCCTTGCCGCGGAAGTGGTACCAGCCGTTCGACTTGAACAAGCACAGCTTGAAGAAGTGCCGGAACACGGCGAGCGACGGCGGCACGCCGGCGTGGTGGGAGAGCACGAGGAAGCCGGCCATGATGCGCCACCCGTTGGGCGTGACCTCGCTCGGCGCGAGGCCGAAGTGCCGGAGCACGTCGCAGGCGAAGGGGTGCAGCGGAACGCGCATCCCGGCCTCCAGCGCGTCCTTGTACACGCACACGGCCCCCGGCGGCGGCGTCGAGCACGCGCGGAGGTCGCCGGCGGGGCGCGCGGCGAACCCCTTGGGGACGCCGTGCTTCTTGCAGAGCGCGTCGACGGCTTCCTGCGTGCGCAGTGACGAGGCGATGCGATCCGCGATGGACCTCGAGGGCGCGGGCGGTGAGTCGACGGCGGCGGCGGCGTCGTCGGCGGAGGGAGAGGAGAAAGCGTCGGCGTCGATGATCTCGACGGAAGACGAGGAGGAGGAAGAGGAGGAATGCAT
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| CDS seq | ATGCATTCCTCCTCTTCCTCCTCCTCGTCTTCCGTCGAGATCATCGACGCCGACGCTTTCTCCTCTCCCTCCGCCGACGACGCCGCCGCCGCCGTCGACTCACCGCCCGCGCCCTCGAGGTCCATCGCGGATCGCATCGCCTCGTCACTGCGCACGCAGGAAGCCGTCGACGCGCTCTGCAAGAAGCACGGCGTCCCCAAGGGGTTCGCCGCGCGCCCCGCCGGCGACCTCCGCGCGTGCTCGACGCCGCCGCCGGGGGCCGTGTGCGTGTACAAGGACGCGCTGGAGGCCGGGATGCGCGTTCCGCTGCACCCCTTCGCCTGCGACGTGCTCCGGCACTTCGGCCTCGCGCCGAGCGAGGTCACGCCCAACGGGTGGCGCATCATGGCCGGCTTCCTCGTGCTCTCCCACCACGCCGGCGTGCCGCCGTCGCTCGCCGTGTTCCGGCACTTCTTCAAGCTGTGCTTGTTCAAGTCGAACGGCTGGTACCACTTCCGCGGCAAGGACACCGTCGGGTTGCTCTTCACGGGGATGCCCACACACCTCAAAGGTTGGAAGGAAGGTTTCTTCTTCTTGTCGTCGTCGGCGCCGTGGCCGTGCCAGGTGCGGTGGGGTGGGCCGCCGTCCAAGAGCTCCATCGCCGATCCGGTGCTCACCGGTGAGGAGGAGAAATGGGCGGCGAAGCTTCTGGACAAGCACCGCGCCGCGGTTGATCTCAGGACGTATCTCACCGAGAGCAACCTCGCCGCCGCATTCTCCTCCAACCCCGCCGCCGCCGCGTCGCCGCAGCCGCCGCCGCCTTCTCGTTCTACTAGGGCCGAAGGGATGGACCCGTCAGTCTTTGAGATGATGATGAGCATGCGGGCGGAGAAGGCGGCCGCGGCGCAGGCACCGGCGACGGCGCAGAAGGTGAAGACCGAGCCGGAGAGCGACACGCCGCGGTGTTCGCCGTCGTCGGTGAAGAAGAGGAAGTTTGAAGCAGAGGCCAATGCGAAAGACGGGACGCCACCTACTCCCCATGGCTTCTCGTGCTCGGCCTCCGGCCTGTCTTCCCCGCCGCCGGGATTCTCCGCGCAGAAGCCGACGGCGAGCGACCAAGATCGGAAGCCTATGTTCTCCGCGCAGAAACCGACGGCGAGCGACCATGATCGTACGCCGGGGCACGTGCCCGACAAGCACGACGGCGACACGGCCGACTGGAAGGCCGCGCGGCAGCTGCTTCAGGGCATCGTCACGCCGTCGCGGGAGCGCCAGTTCCCGGCGGCGAAGCCCTCCGACGTCGTCGCGTCGAGCTACGTCACGCTGCTCCAGGCGGCGAACTACGCGACGTTCTCGCTGGACTACGCGCTGGAGCTGGAGGAGAGGCTGCGCGCGCGGGAGCGCGACGCCGCCGCGGAGGCGGACGCCATGCGGAAGGAGGTCGAGGAGAAGGCGCAGCGCGGGCTCGCGGCGGCGAAGGCGGCGGCGGTGCAGGAGTACGTGCTGTCCGAGGAGCACAAGCGGGAGCTCGCGGCGCACGCGCTGGAGGGGTACGAGCGCGGCATGGAGGACATGAGGGGCGTCGCGCTCCGGCTGAGCCCGCGCCTCGACGCCGCGCGGCTCGTCGTGCCGCCGGGTCGGCCTGATTGA
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| Protein seq | MHSSSSSSSSSVEIIDADAFSSPSADDAAAAVDSPPAPSRSIADRIASSLRTQEAVDALCKKHGVPKGFAARPAGDLRACSTPPPGAVCVYKDALEAGMRVPLHPFACDVLRHFGLAPSEVTPNGWRIMAGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWYHFRGKDTVGLLFTGMPTHLKGWKEGFFFLSSSAPWPCQVRWGGPPSKSSIADPVLTGEEEKWAAKLLDKHRAAVDLRTYLTESNLAAAFSSNPAAAASPQPPPPSRSTRAEGMDPSVFEMMMSMRAEKAAAAQAPATAQKVKTEPESDTPRCSPSSVKKRKFEAEANAKDGTPPTPHGFSCSASGLSSPPPGFSAQKPTASDQDRKPMFSAQKPTASDHDRTPGHVPDKHDGDTADWKAARQLLQGIVTPSRERQFPAAKPSDVVASSYVTLLQAANYATFSLDYALELEERLRARERDAAAEADAMRKEVEEKAQRGLAAAKAAAVQEYVLSEEHKRELAAHALEGYERGMEDMRGVALRLSPRLDAARLVVPPGRPD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g06950 | LOC_Os06g06950.1 | Chr06 | 3301364 | 3303145 | - | MSU_osa1r7 | ||
| CDS seq | ATGCATTCCTCCTCTTCCTCCTCCTCGTCTTCCGTCGAGATCATCGACGCCGACGCTTTCTCCTCTCCCTCCGCCGACGACGCCGCCGCCGCCGTCGACTCACCGCCCGCGCCCTCGAGGTCCATCGCGGATCGCATCGCCTCGTCACTGCGCACGCAGGAAGCCGTCGACGCGCTCTGCAAGAAGCACGGCGTCCCCAAGGGGTTCGCCGCGCGCCCCGCCGGCGACCTCCGCGCGTGCTCGACGCCGCCGCCGGGGGCCGTGTGCGTGTACAAGGACGCGCTGGAGGCCGGGATGCGCGTTCCGCTGCACCCCTTCGCCTGCGACGTGCTCCGGCACTTCGGCCTCGCGCCGAGCGAGGTCACGCCCAACGGGTGGCGCATCATGGCCGGCTTCCTCGTGCTCTCCCACCACGCCGGCGTGCCGCCGTCGCTCGCCGTGTTCCGGCACTTCTTCAAGCTGTGCTTGTTCAAGTCGAACGGCTGGTACCACTTCCGCGGCAAGGACACCGTCGGGTTGCTCTTCACGGGGATGCCCACACACCTCAAAGGTTGGAAGGAAGGTTTCTTCTTCTTGTCGTCGTCGGCGCCGTGGCCGTGCCAGGTGCGGTGGGGTGGGCCGCCGTCCAAGAGCTCCATCGCCGATCCGGTGCTCACCGGTGAGGAGGAGAAATGGGCGGCGAAGCTTCTGGACAAGCACCGCGCCGCGGTTGATCTCAGGACGTATCTCACCGAGAGCAACCTCGCCGCCGCATTCTCCTCCAACCCCGCCGCCGCCGCGTCGCCGCAGCCGCCGCCGCCTTCTCGTTCTACTAGGGCCGAAGGGATGGACCCGTCAGTCTTTGAGATGATGATGAGCATGCGGGCGGAGAAGGCGGCCGCGGCGCAGGCACCGGCGACGGCGCAGAAGGTGAAGACCGAGCCGGAGAGCGACACGCCGCGGTGTTCGCCGTCGTCGGTGAAGAAGAGGAAGTTTGAAGCAGAGGCCAATGCGAAAGACGGGACGCCACCTACTCCCCATGGCTTCTCGTGCTCGGCCTCCGGCCTGTCTTCCCCGCCGCCGGGATTCTCCGCGCAGAAGCCGACGGCGAGCGACCAAGATCGGAAGCCTATGTTCTCCGCGCAGAAACCGACGGCGAGCGACCATGATCGTACGCCGGGGCACGTGCCCGACAAGCACGACGGCGACACGGCCGACTGGAAGGCCGCGCGGCAGCTGCTTCAGGGCATCGTCACGCCGTCGCGGGAGCGCCAGTTCCCGGCGGCGAAGCCCTCCGACGTCGTCGCGTCGAGCTACGTCACGCTGCTCCAGGCGGCGAACTACGCGACGTTCTCGCTGGACTACGCGCTGGAGCTGGAGGAGAGGCTGCGCGCGCGGGAGCGCGACGCCGCCGCGGAGGCGGACGCCATGCGGAAGGAGGTCGAGGAGAAGGCGCAGCGCGGGCTCGCGGCGGCGAAGGCGGCGGCGGTGCAGGAGTACGTGCTGTCCGAGGAGCACAAGCGGGAGCTCGCGGCGCACGCGCTGGAGGGGTACGAGCGCGGCATGGAGGACATGAGGGGCGTCGCGCTCCGGCTGAGCCCGCGCCTCGACGCCGCGCGGCTCGTCGTGCCGCCGGGTCGGCCTGATTGA
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| Protein seq | MHSSSSSSSSSVEIIDADAFSSPSADDAAAAVDSPPAPSRSIADRIASSLRTQEAVDALCKKHGVPKGFAARPAGDLRACSTPPPGAVCVYKDALEAGMRVPLHPFACDVLRHFGLAPSEVTPNGWRIMAGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWYHFRGKDTVGLLFTGMPTHLKGWKEGFFFLSSSAPWPCQVRWGGPPSKSSIADPVLTGEEEKWAAKLLDKHRAAVDLRTYLTESNLAAAFSSNPAAAASPQPPPPSRSTRAEGMDPSVFEMMMSMRAEKAAAAQAPATAQKVKTEPESDTPRCSPSSVKKRKFEAEANAKDGTPPTPHGFSCSASGLSSPPPGFSAQKPTASDQDRKPMFSAQKPTASDHDRTPGHVPDKHDGDTADWKAARQLLQGIVTPSRERQFPAAKPSDVVASSYVTLLQAANYATFSLDYALELEERLRARERDAAAEADAMRKEVEEKAQRGLAAAKAAAVQEYVLSEEHKRELAAHALEGYERGMEDMRGVALRLSPRLDAARLVVPPGRPD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0165300 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0165300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0010870 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0010750 | SBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0010730 | SBH | 0.000000 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0010750 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0010880 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0057000 | RBH | 0.0100355 | 0.0960465 | 0.0614845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0010440 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0056800 | RBH | 0 | 0 | 0.005889 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0010860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0010730 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0005230 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G010500 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0010790 | RBH | 0.000000 | 0.0 | 0.0 |
