Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g02780 | OGI:06002590 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:1011584-1014688 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAATAGGCAAACAAATTAAGTTTTATTTCTTCGTGCATATATATATATATATATATATATATATATATATATATATATATATACCCACATGGATGGAAGAGTACATATCAAAGCAACCGCTAATCTGGCTCATACATGACGCCAGCCAGCTGATCTTGTAGCACGTGTACGCATACGCAAAAATAAATAGGAGGAATCAAATTAAAGACGCGAGCGCTCGAGCTTTATGAAAATTAAAAGGTATCACCGGAGCAAGAGCAGCTCCGGCCTGTAGTAGTAGAGTCCCGATCGAGACGTCGGGGGCGGCGGCCGGACTCAGCAGGCGGCATGGCGGAATCCGACGAGGGCGGCGGGGATGTTGTAGAGCACCTCGAGCGTCTGAAGCTGGATGTTGCCGATGATCCCGGGGACCTGGTCGTTGGGGCCGGCGGTGAAGGCGAGGCAGCCCTGGAAGAGGACGCCCGACGGATCGAGCTCGACGGCGGCGTTCTTGTCGAACACAAGCGTGATCCTCGGCAGCGCGAAGCTGCGGACGCCGGCCATGTCGTAGCAGGTGTCGAGCGGGCCCTTGGGCGGCGCCGGCTGGTACATCGCCATCCGGTCCCTGAACGCCTGCCTCAGCGCCTGGTACGCCGTCGGCGGCAGCCTGGTGATGGCGGTGCGGGAGTCGAGCGCGGCGCCGGCGGCGAACACGGTGGGCGGCACGGCGATCCGCTGCCCGGCGACGGCGATGGCCTCGAGGCGCACCATGTAGAACGTGGGCGGGATGGCCGGGTTCTTGAGCATCGGCGTCAGCACGTACCTCCAGGCGGCCACCCTCGGCACGCCGAGGGTGAAGAATCCCCGGCGCGTCGGCGGCGGGAAGCAGTGGGAGAAGACGCGGCCGTAGGTCGCCGCCGTCTGCGACACCAGTGACTCCGGCCCGCCGCCGAGTGCCATGATCCCGGCGGCGCTGCTGCCGAAGCTGAAGCTGCCCTGCACGCCGTGGCTGCAGCCGAACTGGAAGCTCCTGACTGCGGTGGCGGGGGTGATGGTCAGCAGGTCGGAGATGTAGGTGCCCGCCGTCGACGTGCCGTCGGGGTACCGGACGCGGTACTGGCACTGGTTATTGTTGGTGCAGCCATTGGCGTAGGGGCCGAGCTGGGTGCACGTCGGCGAGTTGCAGGAGAAGACGCCGGACGACGACGACTTGGTGGGGTCGTAGAGGACGTCCTTTTGCGGGTAGCACGGCGGCGTGGGGCACGGCGAGCACTGCACCCATGTCACGTCGCTCGCCGTGTCCAGCACCATCGTCTGGGTCACTCCCGGCCCGCCGCCGCCGCCGCCGGTGGCGGCCGGATTCATCGCCTGAGATCGGACAGCTAGCATGTGAGTACGTTTTAATATATTTCGATCCCTCGAGGAGATGTCCGGTCACGTTGTTAATTTGCATATCACTTAAATGGTTATGAAAAAGTAATTTGACAAGATGTATTAACATGTAATATATCACTGCACAAATAATATGTAAGATCAAATTGAACTTCTACATCTTAAAAAAGAAGTTTTTTTAAGAACCACAGCAGGGAAAGCCACCACCGTTAAGATTTTATTAATATATAAAAGAAAAAATAAATTATAACATCAGAATCCAGTTCTTTACTACATCTTGATCTCTCATTTAATCTAAACAACAACAACAGGAAATCTCTTCCTCCCTTAAGAAGATACTTCCAGGAAGAAAAAGGAAAATTGTAAAAAAAAAAGGTTAAATTTATTTTTTTCGTTACTATACGTAGAAGTTGAATTTGAATTTGATAAGCAGCATGTACGTCAATAATGTAATAAGTTCTAGATCTATTATTCTTTTCATCAGATCAATCAATAATGCATAAGAAGTTCTAGCCAATTTTATTAATATTATATATTGTGGGTAATTATTAACCTTTTTTAATTATATAAACTTAGCTTTCTAATTAATTACTAGTAATAGGTTAATTATTATTATTGTTATATAATTATTTTACTTCTTTTTGCATATGTGTGGGTTAAATAATTTTACCTTTGATGACATTGGTGCAGGTGCAGGGTAGTACGTGCCATAGTTAAGATCTCCTTCTATGGACTGCTGTTCGTAGTTAGTTGACACCGGCACGTCGTCGGCCGGCTGCAGCACGCCGGCGACCGAGCCGGAGAGCCTCCACTGTATGTAGTCGGCGCGGTGCTGGTCCGACCAGAGCATGCCGTCGACGGTGGACGGCGCCGCCCTACCCTTCGCCGGCGAGGAGCTGCACGGCCCGTACGGTCGGCTCAACGGGACCCAGTTGGTCACGTTGGGGTGTGGGCTCACTAACATCCACGTACAACAATTATATTTATTAATATGATATATTAATAATAATTATTATTAAATGCCAAAATAATTCGTTTCATTTGTTAGAGAGGTTATTTACCAAGGTAAACAAGGAAGAATATATAGTTAAAAGTTGCCCAACGACGGCAAAGTCTAGTAAAGAGTCGAGAAGATAAATGATTTATATTTATAATAGGAGGAAATAGTATAATTGCTCTGACTTAACTACTTATTAAAAACGTTCAAGTTTTAATCTTAGGTACTACTACCTCTGTTTCATATATAAAGTCGTTTTTATTTTTTTTCTAGTCAAAGTTTTTTTGTTTGATTAAATTTGTAAAAGGACGTAGCAACATCTACGGTCCCAAATTAGTTTTCAATTAAATGTAACATTGAATATATTTTGATAATATATTTGTTTTGTGTTAGAAGTATTGCTAATTTTCTATAAATTTGGATAAACTTATATATGAAAAAATTACGGAGAGAGTAGGAAGAAGAGAGAGAAAAATTAAGACGGTACTCAGGCTGGAGCAGACGGAATTTGGCTTGAGCCAGCTGCTGGTTAGCACCACGATGTAGTTGACCTCATCTACACCTGCACTGTGGTCAGCGAGAGATGTAGAGCCAGAGAGCACAACAAGAAGCAACAGTAGCAACGGCACTAGTGCTGCACAAGCCATTGCCATAGCCGGGCCGCTCCTGTATTTGTGCTGTGCTACTGATGATGATGTGCTGTGCCAAGTCTAGCTAGCTCCCTGTTCGACTATAT
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| CDS seq | ATGGCAATGGCTTGTGCAGCACTAGTGCCGTTGCTACTGTTGCTTCTTGTTGTGCTCTCTGGCTCTACATCTCTCGCTGACCACAGTGCAGGTGTAGATGAGGTCAACTACATCGTGGTGCTAACCAGCAGCTGGCTCAAGCCAAATTCCGTCTGCTCCAGCCTGATGAGCCCACACCCCAACGTGACCAACTGGGTCCCGTTGAGCCGACCGTACGGGCCGTGCAGCTCCTCGCCGGCGAAGGGTAGGGCGGCGCCGTCCACCGTCGACGGCATGCTCTGGTCGGACCAGCACCGCGCCGACTACATACAGTGGAGGCTCTCCGGCTCGGTCGCCGGCGTGCTGCAGCCGGCCGACGACGTGCCGGTGTCAACTAACTACGAACAGCAGTCCATAGAAGGAGATCTTAACTATGGCACGTACTACCCTGCACCTGCACCAATGTCATCAAAGGCGATGAATCCGGCCGCCACCGGCGGCGGCGGCGGCGGGCCGGGAGTGACCCAGACGATGGTGCTGGACACGGCGAGCGACGTGACATGGGTGCAGTGCTCGCCGTGCCCCACGCCGCCGTGCTACCCGCAAAAGGACGTCCTCTACGACCCCACCAAGTCGTCGTCGTCCGGCGTCTTCTCCTGCAACTCGCCGACGTGCACCCAGCTCGGCCCCTACGCCAATGGCTGCACCAACAATAACCAGTGCCAGTACCGCGTCCGGTACCCCGACGGCACGTCGACGGCGGGCACCTACATCTCCGACCTGCTGACCATCACCCCCGCCACCGCAGTCAGGAGCTTCCAGTTCGGCTGCAGCCACGGCGTGCAGGGCAGCTTCAGCTTCGGCAGCAGCGCCGCCGGGATCATGGCACTCGGCGGCGGGCCGGAGTCACTGGTGTCGCAGACGGCGGCGACCTACGGCCGCGTCTTCTCCCACTGCTTCCCGCCGCCGACGCGCCGGGGATTCTTCACCCTCGGCGTGCCGAGGGTGGCCGCCTGGAGGTACGTGCTGACGCCGATGCTCAAGAACCCGGCCATCCCGCCCACGTTCTACATGGTGCGCCTCGAGGCCATCGCCGTCGCCGGGCAGCGGATCGCCGTGCCGCCCACCGTGTTCGCCGCCGGCGCCGCGCTCGACTCCCGCACCGCCATCACCAGGCTGCCGCCGACGGCGTACCAGGCGCTGAGGCAGGCGTTCAGGGACCGGATGGCGATGTACCAGCCGGCGCCGCCCAAGGGCCCGCTCGACACCTGCTACGACATGGCCGGCGTCCGCAGCTTCGCGCTGCCGAGGATCACGCTTGTGTTCGACAAGAACGCCGCCGTCGAGCTCGATCCGTCGGGCGTCCTCTTCCAGGGCTGCCTCGCCTTCACCGCCGGCCCCAACGACCAGGTCCCCGGGATCATCGGCAACATCCAGCTTCAGACGCTCGAGGTGCTCTACAACATCCCCGCCGCCCTCGTCGGATTCCGCCATGCCGCCTGCTGA
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| Protein seq | MAMACAALVPLLLLLLVVLSGSTSLADHSAGVDEVNYIVVLTSSWLKPNSVCSSLMSPHPNVTNWVPLSRPYGPCSSSPAKGRAAPSTVDGMLWSDQHRADYIQWRLSGSVAGVLQPADDVPVSTNYEQQSIEGDLNYGTYYPAPAPMSSKAMNPAATGGGGGGPGVTQTMVLDTASDVTWVQCSPCPTPPCYPQKDVLYDPTKSSSSGVFSCNSPTCTQLGPYANGCTNNNQCQYRVRYPDGTSTAGTYISDLLTITPATAVRSFQFGCSHGVQGSFSFGSSAAGIMALGGGPESLVSQTAATYGRVFSHCFPPPTRRGFFTLGVPRVAAWRYVLTPMLKNPAIPPTFYMVRLEAIAVAGQRIAVPPTVFAAGAALDSRTAITRLPPTAYQALRQAFRDRMAMYQPAPPKGPLDTCYDMAGVRSFALPRITLVFDKNAAVELDPSGVLFQGCLAFTAGPNDQVPGIIGNIQLQTLEVLYNIPAALVGFRHAAC |
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| Function | Aspartyl protease family protein At5g10770 [UniProtKB/Swiss-Prot:Q8S9J6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g02780 | LOC_Os06g02780.1 | Chr06 | 1011584 | 1014688 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAATGGCTTGTGCAGCACTAGTGCCGTTGCTACTGTTGCTTCTTGTTGTGCTCTCTGGCTCTACATCTCTCGCTGACCACAGTGCAGGTGTAGATGAGGTCAACTACATCGTGGTGCTAACCAGCAGCTGGCTCAAGCCAAATTCCGTCTGCTCCAGCCTGATGAGCCCACACCCCAACGTGACCAACTGGGTCCCGTTGAGCCGACCGTACGGGCCGTGCAGCTCCTCGCCGGCGAAGGGTAGGGCGGCGCCGTCCACCGTCGACGGCATGCTCTGGTCGGACCAGCACCGCGCCGACTACATACAGTGGAGGCTCTCCGGCTCGGTCGCCGGCGTGCTGCAGCCGGCCGACGACGTGCCGGTGTCAACTAACTACGAACAGCAGTCCATAGAAGGAGATCTTAACTATGGCACGTACTACCCTGCACCTGCACCAATGTCATCAAAGGCGATGAATCCGGCCGCCACCGGCGGCGGCGGCGGCGGGCCGGGAGTGACCCAGACGATGGTGCTGGACACGGCGAGCGACGTGACATGGGTGCAGTGCTCGCCGTGCCCCACGCCGCCGTGCTACCCGCAAAAGGACGTCCTCTACGACCCCACCAAGTCGTCGTCGTCCGGCGTCTTCTCCTGCAACTCGCCGACGTGCACCCAGCTCGGCCCCTACGCCAATGGCTGCACCAACAATAACCAGTGCCAGTACCGCGTCCGGTACCCCGACGGCACGTCGACGGCGGGCACCTACATCTCCGACCTGCTGACCATCACCCCCGCCACCGCAGTCAGGAGCTTCCAGTTCGGCTGCAGCCACGGCGTGCAGGGCAGCTTCAGCTTCGGCAGCAGCGCCGCCGGGATCATGGCACTCGGCGGCGGGCCGGAGTCACTGGTGTCGCAGACGGCGGCGACCTACGGCCGCGTCTTCTCCCACTGCTTCCCGCCGCCGACGCGCCGGGGATTCTTCACCCTCGGCGTGCCGAGGGTGGCCGCCTGGAGGTACGTGCTGACGCCGATGCTCAAGAACCCGGCCATCCCGCCCACGTTCTACATGGTGCGCCTCGAGGCCATCGCCGTCGCCGGGCAGCGGATCGCCGTGCCGCCCACCGTGTTCGCCGCCGGCGCCGCGCTCGACTCCCGCACCGCCATCACCAGGCTGCCGCCGACGGCGTACCAGGCGCTGAGGCAGGCGTTCAGGGACCGGATGGCGATGTACCAGCCGGCGCCGCCCAAGGGCCCGCTCGACACCTGCTACGACATGGCCGGCGTCCGCAGCTTCGCGCTGCCGAGGATCACGCTTGTGTTCGACAAGAACGCCGCCGTCGAGCTCGATCCGTCGGGCGTCCTCTTCCAGGGCTGCCTCGCCTTCACCGCCGGCCCCAACGACCAGGTCCCCGGGATCATCGGCAACATCCAGCTTCAGACGCTCGAGGTGCTCTACAACATCCCCGCCGCCCTCGTCGGATTCCGCCATGCCGCCTGCTGA
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| Protein seq | MAMACAALVPLLLLLLVVLSGSTSLADHSAGVDEVNYIVVLTSSWLKPNSVCSSLMSPHPNVTNWVPLSRPYGPCSSSPAKGRAAPSTVDGMLWSDQHRADYIQWRLSGSVAGVLQPADDVPVSTNYEQQSIEGDLNYGTYYPAPAPMSSKAMNPAATGGGGGGPGVTQTMVLDTASDVTWVQCSPCPTPPCYPQKDVLYDPTKSSSSGVFSCNSPTCTQLGPYANGCTNNNQCQYRVRYPDGTSTAGTYISDLLTITPATAVRSFQFGCSHGVQGSFSFGSSAAGIMALGGGPESLVSQTAATYGRVFSHCFPPPTRRGFFTLGVPRVAAWRYVLTPMLKNPAIPPTFYMVRLEAIAVAGQRIAVPPTVFAAGAALDSRTAITRLPPTAYQALRQAFRDRMAMYQPAPPKGPLDTCYDMAGVRSFALPRITLVFDKNAAVELDPSGVLFQGCLAFTAGPNDQVPGIIGNIQLQTLEVLYNIPAALVGFRHAAC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.087634 | 0.088833 | 0.599882 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0118700 | RBH | 0.131898 | 0.134433 | 2.380544 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g02730 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0118700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0001350 | RBH | 0.0 | 0.0 | 5.908270 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0001320 | RBH | 0.317536 | 0.0 | 2.501208 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0001280 | RBH | 0.000000 | 0.0 | 7.502374 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0001280 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0001300 | RBH | 0.620396 | 0.0 | 12.559748 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0015600 | RBH | 25.367006 | 0 | 0.1725995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0001200 | RBH | 0.0 | 0.0 | 0.523444 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0017700 | RBH | 19.720953 | 0 | 0.1676135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0001280 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0001290 | RBH | 0.174490 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0001230 | RBH | 0.994742 | 13.398080 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0001300 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0001170 | RBH | 0.063889 | 5.983014 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G001210 | RBH | 0.0 | 1.119954 | 7.753479 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0001270 | RBH | 0.0 | 0.0 | 3.722122 |
