Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os06g01740 | OGI:06000850 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr06:430837-434797 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATTTCTGAGAATCTAACAGAATTCTATTCATTTTATTGTACATCATGTTGGTTTTGTTTCCAATATCAGCACATTTCTTAGAGAATTTCTTTTCACCAACAAAAACAACATCAGGGGAATCCTGAGATTGAACAGATTAATTAAATAGTACAGTTAGAAACATATTAAAAAAAGGAGATCAAAATAACTAGAAAGAAAAAAAATAATTATTAGCTTATAACCAGAACAGAAAAATGATAAATAAAAGTAAGGTACAGGGCATGAAAGATTTGAAATATCAATATGAAATAACAGTTCAGCAAATAAACTAGTGATGCTCAACAGCAAACTTACAAACTTGAGATTATAAACTTAATAAAAAGTAATGAATAAGCAGTGAGAAGAAAGACCTTTTGGAATAAAAAAAGAAAGAATGTTTGTTATTAACTAGAACTGAAATACATTGTAACCTACAAGAATTACAACAAAACTATGGAGAATAACAATGCAAAAATGGGATTAGCAAAATTTTTAAACACCATTTAATTTCAAAAAGGGATCATCAATGAAAATAAACTATGAGATTATTCATACCTTGATCATGTGACAACCTTTTTCATTTTCTTTGTTTTCATTGAGAGAAGCAGTAGGAGAAGTTGAATTTTCAAGTGTCACCATATACATCTTATCCTAAAATTTCAAATTTAACAAATGCAAGTTTAGTTTGTATATACAGAAGAAATAAAGAAAGCAATTAATGTCAGAATTACCGGACTATCTGAACAGATTATTGGGCTTTCAACAGCAGCAACAAAAGTTTGAGACAACTTTCTTGGAGTGATCTGCAAGATTTGTATAAATCAATATAATGTTCTAAAAAAGTATTCCTTATGAAGTTTGAAGTTATTAGACAAGTACCTTATTTATTAAAACAGGATTTGGGGAGTATGAATCAGGAATAACTTAATGTGAATCTACAAGATGAGCAGGTGTAATTTCTTTTTTGAAATCATCATTTTTCACGATGGAGGTTATCATCAGAATCCCAGATTTTAAAAGACGGTCGAAAAAGTTGATTGTTTCGAGCTACAGCAATAACACAAGAATTAGAAACAAAAATATGGCAACAAAAAGTAAGAGGATCATAGTACAGTGCACTAAAATCACATGACAAAAAGAATGAAATATTACAATAACTCAATTTTTTTTGCTAGAACAGTTAAAGATCTACAAGTAAAAACAAAAGATATTCCATTGAGAAAAATTAACCTGTCAAGGCAGAATTTTTCTCTGTTTCATCTGGTGGATTAATAGGAACATGACCTTCAATGATAAATAGGCAGAAACATCAATAATTCATATTTAATTTTTTTTAAAACAGATTAACAAATCTAGAAAAAAAATAACCTGTTTTGTTCAACTTCTTCATTATTTCATCAATGTTGATATATTTAATCTACACAAATAAAAAATGACAGTTAAAAACTATCAACAATTAGAGTTCTATCTATTCATATTATAATGATTGAAATAAAAATGAAAAAAAAACCTGTTCTGAAGAATTCAAATTGGTAGACTTATTCACAGGATTAAATTCTTCATTTGGAATTGGCAACTTGTCATCATCTAGTACTGTTTTACTGTTTCCCTACAAAAAAAAAATAAAAGGACAAAAAATGTTTAATGATTCACATGACTATTAGAATAAAAAAAATTGAAATGAGAAGAGAAAACAATGTACCTTTGTAGATGAGGTGATATTGTTATTTTTTTGCACAGCTTGATTAACATCATCATTAATTTCTTCATCTTGTTCATGATCTGGTTCAATTCATTAATTTAAAATTTATAAAAAAAATCAAGACATATGAATGGAAAAAAATTAAAAATAAAATAAACAACAAAATTCATAAATTAAAAGTAATAACCTGAATTTTCATGTGCAGTTAGTGGTAGTTATATAAGTCATCTCCGACGAAACAGGAACTGCAATCAGCTAACAACAACAGCACATCTATAAGAAGTTTCTTAGCTTTGTCTTCAAAGATTTCATCTTGTTTTCCAAAATGATTGTAGAGCAAATGATAAATTTTGTCTTGAACATCACTTGGCAACAGATCACCAACAGAACTTTTGAGCATATCAGCAAATGAAGATGAGCTATTATCCACCTAAAAAATTAAAACAGAATTTTCAATTCCAATCTAAGAAAATTTATTAGAACTTGAAAAGATAAAAATTTGAAAAAAAACTGAACATTTACCATTTGGTAACAAGTTGAAGCAATATCATTGACTGGTGTTTTTCCATACACTCTTTCAGATATTTTATCAAATTTGGAATAGTCCTTAATCATATATCTTTTCCAAACTTTAATTCTTGGTGTATCAAGTAATACTTTTTGTGAACCAAAGTTGAGAAAATCCAGGTAATTAACCTATGAAACATTGAATATAGAAATTAAATGAATAGTCATTTAGTACAAAATATAAATAAGCATAAATGGAGGGAAAAAATATTTACCGTTAAATGTAATAAACAACCACCAAAAGTTTTCAATTTCTCAAGCTTGCTAATGTGATCCATCAACCAGTCAAAAACTAACTTGCACCAGTCCAAACTTTCAATTAAGTCCATGTCTTCAAAGGCACTTAGGTATTTTGTACTCGGAATCAAAGAAGAGTTCGGACAAAGGAAGCAATTCAAGGAAACAATCATAAAGCAGATGAGAATTTGATCATCAGGAAGTTCTTCATTTTTAATTAACTTTTCTCCAAAGAACTTGACAGAAGGAATAGAAGTTTTCCCAAAAATATGAAGAATCTTTTGTTTGCCAGAATCAAATTTTGAATGGATTGTACTACCACCAACATGGAGGCCTAGCACAACATGGACAGATTGCTTGTTCAATGGAATAAGTTTTTGGCCCAAAACTATATCAGAACAGTTCACATCTACTTGTTTTGCAATCCAAAGAGCAAAAGAATTGGGAACAAAACACTTGTCAAATAGCAGCATGCTTCGAAAACAAGAATTTTCAATGACTGTTTTGTGATGTGGACTTAAAGAATCAAGAACTTTTGAGAAATATTTGACAGAGAATCTAGAGAATGCATCAGACTTCAAATCAGTGTCAACATTTTTGTCCTAACAAAAAGAAAATAAAACAAATTAATTAATAAATAAAAACCAAACATAGATATAAAAGGGCATTGCAAAAAACTAACCTTCAAATTTTGATCACCTATGTTGTGATGAATATTAAGCTTTTTTTTCAAATTGTTGATAATCTGATCCATTTGTATGATATCACGTAGAACCTGATTTATCATTACATCATTGTCCAATTCAATAGATTCAGACCTTTTCATCTAAAAAAATTCAAAATTAAAAACAAAAATGATGGAAAATATAAAATGAAAAATAACAAACAAAATAATTACCTTAATGTTATCATCTTCACTTCTTTTAGACTTACTGAGTTTTCTTTTCAAAGTTTTCAGAAGTTCATTTGTAGAAATTTCATTTACATGTGGTTGTGAAACATCCATATCCTAAGAAAACATATTAAACAATTAAAACATTGCAAATGTGCTATGAAACATGGCTACAACAGAAATTACATTAAGATCATTTGTAGAAATTACATTAAGATGGTCTTGTGAAGGTACATCCATATGCTGAAAATAAAAAAAGAAAAATTAAAACTGTGCAAATGCATATCAATGAAGCATTAGTGCAAAAGTAAAACAAAAGTAACAAGTTAAAAAAAAACTTACATGACTGTCACAATTATCACCAGAATCACAGTAAAAAGAAAAGTAACAAGTTAAAAAAAAACTTACATTACTGTCACTATTATCACTAGAATCACATTGGTAGTTATCATCATTATTTGGCAACGATTCAGAATGAATATCATCAGATTCATTTAAAGACTGGCTACAATCCTCCAATTTTGAGCGCTTTTGGCGAACCAT
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| CDS seq | ATGGTTCGCCAAAAGCGCTCAAAATTGGAGGATTGTAGCCAGTCTTTAAATGAATCTGATGATATTCATTCTGAATCGTTGCCAAATAATGATGATAACTACCAATGTGATTCTAGTGATAATAGTGACAGTAATCATATGGATGTACCTTCACAAGACCATCTTAATGTAATTTCTACAAATGATCTTAATGATATGGATGTTTCACAACCACATGTAAATGAAATTTCTACAAATGAACTTCTGAAAACTTTGAAAAGAAAACTCAGTAAGTCTAAAAGAAGTGAAGATGATAACATTAAGATGAAAAGGTCTGAATCTATTGAATTGGACAATGATGTAATGATAAATCAGGTTCTACGTGATATCATACAAATGGATCAGATTATCAACAATTTGAAAAAAAAGCTTAATATTCATCACAACATAGGTGATCAAAATTTGAAGGACAAAAATGTTGACACTGATTTGAAGTCTGATGCATTCTCTAGATTCTCTGTCAAATATTTCTCAAAAGTTCTTGATTCTTTAAGTCCACATCACAAAACAGTCATTGAAAATTCTTGTTTTCGAAGCATGCTGCTATTTGACAAGTGTTTTGTTCCCAATTCTTTTGCTCTTTGGATTGCAAAACAAGTAGATGTGAACTGTTCTGATATAGTTTTGGGCCAAAAACTTATTCCATTGAACAAGCAATCTGTCCATGTTGTGCTAGGCCTCCATGTTGGTGGTAGTACAATCCATTCAAAATTTGATTCTGGCAAACAAAAGATTCTTCATATTTTTGGGAAAACTTCTATTCCTTCTGTCAAGTTCTTTGGAGAAAAGTTAATTAAAAATGAAGAACTTCCTGATGATCAAATTCTCATCTGCTTTATGATTGTTTCCTTGAATTGCTTCCTTTGTCCGAACTCTTCTTTGATTCCGAGTACAAAATACCTAAGTGCCTTTGAAGACATGGACTTAATTGAAAGTTTGGACTGGTGCAAGTTAGTTTTTGACTGGTTGATGGATCACATTAGCAAGCTTGAGAAATTGAAAACTTTTGGTGGTTGTTTATTACATTTAACGGTTAATTACCTGGATTTTCTCAACTTTGGTTCACAAAAAGTATTACTTGATACACCAAGAATTAAAGTTTGGAAAAGATATATGATTAAGGACTATTCCAAATTTGATAAAATATCTGAAAGAGTGTATGGAAAAACACCAGTCAATGATATTGCTTCAACTTGTTACCAAATGGTGGATAATAGCTCATCTTCATTTGCTGATATGCTCAAAAGTTCTGTTGGTGATCTGTTGCCAAATCATGAACAAGATGAAGAAATTAATGATGATGTTAATCAAGCTGTGCAAAAAAATAACAATATCACCTCATCTACAAAGGGAAACAGTAAAACAGTACTAGATGATGACAAGTTGCCAATTCCAAATGAAGAATTTAATCCTGTGAATAAGTCTACCAATTTGAATTCTTCAGAACAGATTAAATATATCAACATTGATGAAATAATGAAGAAGTTGAACAAAACAGGTCATGTTCCTATTAATCCACCAGATGAAACAGAGAAAAATTCTGCCTTGACAGATTTTAGGATAAGATGTATATGGTGA
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| Protein seq | MVRQKRSKLEDCSQSLNESDDIHSESLPNNDDNYQCDSSDNSDSNHMDVPSQDHLNVISTNDLNDMDVSQPHVNEISTNELLKTLKRKLSKSKRSEDDNIKMKRSESIELDNDVMINQVLRDIIQMDQIINNLKKKLNIHHNIGDQNLKDKNVDTDLKSDAFSRFSVKYFSKVLDSLSPHHKTVIENSCFRSMLLFDKCFVPNSFALWIAKQVDVNCSDIVLGQKLIPLNKQSVHVVLGLHVGGSTIHSKFDSGKQKILHIFGKTSIPSVKFFGEKLIKNEELPDDQILICFMIVSLNCFLCPNSSLIPSTKYLSAFEDMDLIESLDWCKLVFDWLMDHISKLEKLKTFGGCLLHLTVNYLDFLNFGSQKVLLDTPRIKVWKRYMIKDYSKFDKISERVYGKTPVNDIASTCYQMVDNSSSSFADMLKSSVGDLLPNHEQDEEINDDVNQAVQKNNNITSSTKGNSKTVLDDDKLPIPNEEFNPVNKSTNLNSSEQIKYINIDEIMKKLNKTGHVPINPPDETEKNSALTDFRIRCIW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os06g01740 | LOC_Os06g01740.1 | Chr06 | 430837 | 434797 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTTCGCCAAAAGCGCTCAAAATTGGAGGATTGTAGCCAGTCTTTAAATGAATCTGATGATATTCATTCTGAATCGTTGCCAAATAATGATGATAACTACCAATGTGATTCTAGTGATAATAGTGACAGTAATCATATGGATGTACCTTCACAAGACCATCTTAATGTAATTTCTACAAATGATCTTAATGATATGGATGTTTCACAACCACATGTAAATGAAATTTCTACAAATGAACTTCTGAAAACTTTGAAAAGAAAACTCAGTAAGTCTAAAAGAAGTGAAGATGATAACATTAAGATGAAAAGGTCTGAATCTATTGAATTGGACAATGATGTAATGATAAATCAGGTTCTACGTGATATCATACAAATGGATCAGATTATCAACAATTTGAAAAAAAAGCTTAATATTCATCACAACATAGGTGATCAAAATTTGAAGGACAAAAATGTTGACACTGATTTGAAGTCTGATGCATTCTCTAGATTCTCTGTCAAATATTTCTCAAAAGTTCTTGATTCTTTAAGTCCACATCACAAAACAGTCATTGAAAATTCTTGTTTTCGAAGCATGCTGCTATTTGACAAGTGTTTTGTTCCCAATTCTTTTGCTCTTTGGATTGCAAAACAAGTAGATGTGAACTGTTCTGATATAGTTTTGGGCCAAAAACTTATTCCATTGAACAAGCAATCTGTCCATGTTGTGCTAGGCCTCCATGTTGGTGGTAGTACAATCCATTCAAAATTTGATTCTGGCAAACAAAAGATTCTTCATATTTTTGGGAAAACTTCTATTCCTTCTGTCAAGTTCTTTGGAGAAAAGTTAATTAAAAATGAAGAACTTCCTGATGATCAAATTCTCATCTGCTTTATGATTGTTTCCTTGAATTGCTTCCTTTGTCCGAACTCTTCTTTGATTCCGAGTACAAAATACCTAAGTGCCTTTGAAGACATGGACTTAATTGAAAGTTTGGACTGGTGCAAGTTAGTTTTTGACTGGTTGATGGATCACATTAGCAAGCTTGAGAAATTGAAAACTTTTGGTGGTTGTTTATTACATTTAACGGTTAATTACCTGGATTTTCTCAACTTTGGTTCACAAAAAGTATTACTTGATACACCAAGAATTAAAGTTTGGAAAAGATATATGATTAAGGACTATTCCAAATTTGATAAAATATCTGAAAGAGTGTATGGAAAAACACCAGTCAATGATATTGCTTCAACTTGTTACCAAATGGTGGATAATAGCTCATCTTCATTTGCTGATATGCTCAAAAGTTCTGTTGGTGATCTGTTGCCAAATCATGAACAAGATGAAGAAATTAATGATGATGTTAATCAAGCTGTGCAAAAAAATAACAATATCACCTCATCTACAAAGGGAAACAGTAAAACAGTACTAGATGATGACAAGTTGCCAATTCCAAATGAAGAATTTAATCCTGTGAATAAGTCTACCAATTTGAATTCTTCAGAACAGATTAAATATATCAACATTGATGAAATAATGAAGAAGTTGAACAAAACAGGTCATGTTCCTATTAATCCACCAGATGAAACAGAGAAAAATTCTGCCTTGACAGATTTTAGGATAAGATGTATATGGTGA
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| Protein seq | MVRQKRSKLEDCSQSLNESDDIHSESLPNNDDNYQCDSSDNSDSNHMDVPSQDHLNVISTNDLNDMDVSQPHVNEISTNELLKTLKRKLSKSKRSEDDNIKMKRSESIELDNDVMINQVLRDIIQMDQIINNLKKKLNIHHNIGDQNLKDKNVDTDLKSDAFSRFSVKYFSKVLDSLSPHHKTVIENSCFRSMLLFDKCFVPNSFALWIAKQVDVNCSDIVLGQKLIPLNKQSVHVVLGLHVGGSTIHSKFDSGKQKILHIFGKTSIPSVKFFGEKLIKNEELPDDQILICFMIVSLNCFLCPNSSLIPSTKYLSAFEDMDLIESLDWCKLVFDWLMDHISKLEKLKTFGGCLLHLTVNYLDFLNFGSQKVLLDTPRIKVWKRYMIKDYSKFDKISERVYGKTPVNDIASTCYQMVDNSSSSFADMLKSSVGDLLPNHEQDEEINDDVNQAVQKNNNITSSTKGNSKTVLDDDKLPIPNEEFNPVNKSTNLNSSEQIKYINIDEIMKKLNKTGHVPINPPDETEKNSALTDFRIRCIW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g33280 | SBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0000480 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0000480 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0000460 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0000460 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0000460 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0005100 | RBH | 0.0049395 | 0.0089325 | 0.020666 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0009480 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0005500 | RBH | 0.008835 | 0.009403 | 0.0165735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0000460 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0000460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0000460 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0000460 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0009570 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G000440 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0000450 | RBH | 0.0 | 0.0 | 0.0 |
