Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os05g50790 OGI:05078900 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr05:29132047-29135068
Gene Symbol -
DNA seq

ATGCAGCAAGCATTTCTGGAACGGGCGACGAAGAGAAGTGAAACAGATAGTGATCCAGATGCCGAAATGGGGGCAATGAGAACAATGATCCTCAAAGTTGTCAAGGACATGTCTCCAAGCTTTTGCTGTAATTTCATCCCATGGCAGGACCTCGTCGAAGTAGAGAATCAGGAAAGGAAGACCTTCGCAGCGGTGGACGAACCACATCTGCAGGTAATGCGGCGGGAACGGGAAGAGGCGCGTTGCTGACGAACAGCTGCCATGACTCCTCCGGCGACAGAGGCGGCACGACGAGTGGTGGGAGGGAATCGTCCAAGTGGCCACCGATCAAGATGATCGTGGATCCCGCCCTGCCGGCGCTAAGAACATCAAAAAGCTGTGCGAATTGGTGGCCGGCCGCTATCCCAAAAATCTTTTCGCACTCGCACATAGCTACCATCCGTATCAAACTTTTCGCCACCGAAATCATCGATGACGAACAAGAAAACGCAGGGGGAGAGGAGCACCTTGGCGGCGCGGGCGATGTCGTCCCTGTCCTGGAGGATGCAGTCCTCCTCCGTGAGCCATTCCACCAGCTGCAATCCCACCTTTTTGGCAGTGGATCGATCGGCCGCCGCCGCCACCGCCACCGCCACCGCCATTGACCACGCGGGGGCTGCCTGCCAGTGCCAACAAGCCATGTCCATGCCGCCGCTGCTCAATCGGCTCGACACCGTCGACCGCTGCTTCGCCTTGGCCGCGTTGTCGACGTCCGACTTAGGCGGCATCAAGCGGAAGCTAGGGAGAGAGATGAGGTTTCTTGAGCTCTGGTGGGACGAGATCAGGGAGAAGTTCTATGGCGAGTTCGGGCAAACTATCGAACATGTCTGGTTCCCGATAGGCGAGATCAGGCGCCAGTATCGCACTCTTGCCGCTTCGCAAGACACCGTCGAGATCCTCCGTCTCATGGAGAGGATGCGAGACACGACGCACTCCCTGCTCAAGCACAACACTAGGCCGGGCACGGGCAGCGGCGGCGACGATGAAATCGCCGCGGAGCTTCCGCGGCGAGATGATGATGATGAGCTCAGCCTCATCTCCTTGCGGGCACATCTTACAAGCATCATCCGTCTTCTCACGGACGCCATCGTCCACGAGGACGCGTGCGAGGCCAAGCTCCTCCTGGACAAGATCCGAGCCGACCTTGGACGCCTCGAGGGCGCGTTCAACGACATCCACCAGAGCGAGAAGACCATCGAAGGCTCCTTCGGCGCCGTGCAGCACCTCGTCGACGAGCTGCTGCTCGACGCCGCGGCCGCGCCGGTGGCCACCTCGAGCCGGCAGGACCAGCTCAGGTGTCTCATCACCGCGCTGTCGTCCGTCGACAGAGAGGTCGCCGCGATAACCGACCGTGTCAACGACACGTTCCGCCTCTCCACAGCTGCCGCTGCCGCGGCCGCGGCCGCGGCAACGCCGGCCGCGCGCGCCGCCTCAAGTTGCTGGGGCGGCGCGCTAGAGAGCAGCTGGGAGACGCGGCGGCATCTGCAGCTCGCGTCGCGATGGACAGCCTCGACACGCGGCTCAAGCGCTGCCTCCTCTGCTTCGTCGTCTTCCCGGACGACGCGGCGATCAAGAGGAGGCTGCTCATCCACTGGTGGGTCGGGGAGCGCCTGGTCGACTCCGTCGACCAAGGGAAGGAGGTGTTCGACGAGCTCGTGTCCTCGACGGGGTTCGTCACGCCACTGCGGCGACCGCACTGCAGCAAGGTCCACGGCTGCAAGATTCAGCCATGGGTTCGCGTTCTGCTCGTAGCCTGTGCGCGGAGGAACGCTTTCCTCGACGGGGTTCGTCACGCCACTGCGGCGACCGCACTGCAGCAAGGTCCACGGCTGCAAGATTCAGCCATGGGTTCGCGTTCTGCTCGTAGCCTGTGCGCGGAGGAACGCTTTCTTGGACCTCGACGCCAATGGCATGCCCAGGGACGACTTCGCCAGGACGCGCCGCGCCTGTCTCCGCGAAGGGAGGACGGTTGCCTCCGGCGCCGGCGCCGGCGGATTCCGTTGGGACGTGACGACGATATACAACGTCGACCGGCGGTACGTCGACCTGGACAAGTCGTGGTTCGCGCGGAAGGAAGAGCTGACCACATTGCAGCTCGGGACATGGAGGGACCACGGCTACGACCCCCGCGCGCACCACGTCGAGCTCATCAACGGCGAGCTCCTGCGCGGCATCGGCGCCTGTCGGAACATGAGGTACCTGAGCTTCCGAGGCATCTCCAGGATCGAGGCGTTGCCGGACTCGATCGGCGGCCTGTGCAGCCTCATCGTCTTGGACCTCAGATCATGCCACAACCTCGCGACGCTCGGCGAAGGGATCAAATCTCTCGTCTCGCTCGAGTACCTCGACGTGTCGGGATGCTACCTTCTCGGCGAAATGCCCAGGGGATCGGGAAGCTCTCAAAGCTGCAGGTGATCAAGGGATTCGTGGTCGCCAACTCCAGCAGCAAGGACCCGTGCCGTCTCAGCGAGCTGCGCGCGCTAACGAGACGAGGCTGAGGAAGCTGAGCATCGTGATAGGCCGGACGGCCAGGCCGGAGGCGGACGAGGTGACGGCGCTCGCGAGCCTCCCCGCGCTCCGGTCGCTGACGATGACATGGAGCGGGGTGTCACCGGCGGAGCAAGATGGTCGAGATGCAACTGACAAGGTGGCGTTCGCGCTCCCGTCTGAGCTCGAGAAGCTGGACCTCCGGTGCTTCCCGCTGCCGGACTTCCCACGGTGGGCGGAGCCTCACCTGCTGCCGCGCCTGGAGAAGCTGTACGTTCGCGGCGGCATGATCACCGGCCTCGGCGAAGGCGGCGGCGGCTCGGCGGTGAAGGTGCTTCGGGTCAGGTTCCTCAGGCACCTCGACTATTCTTGGGAGAAGCTGCACGACGCATACGGGAAGCTTGAGATACTGGAGGTGTGCGAGTGCTCCAACGTGCAGGCTTGGCCTGCTTGTCGTGGTGGGCTTGGGCTTTGGAGGAAGGGAGAAGATTGCTAG

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CDS seq

ATGCAGCAAGCATTTCTGGAACGGGCGACGAAGAGAAGTGAAACAGATAGTGATCCAGATGCCGAAATGGGGGCAATGAGAACAATGATCCTCAAAGTTGTCAAGGACATGTCTCCAAGCTTTTGCTGTAATTTCATCCCATGGCAGGACCTCGTCGAAGTAGAGAATCAGGAAAGGAAGACCTTCGCAGCGGTGGACGAACCACATCTGCAGCTACCATCCGTATCAAACTTTTCGCCACCGAAATCATCGATGACGAACAAGAAAACGCAGGGGGAGAGGAGCACCTTGGCGGCGCGGGCGATGTCGTCCCTGTCCTGGAGGATGCAGTCCTCCTCCGTGAGCCATTCCACCAGCTGCAATCCCACCTTTTTGGCAGTGGATCGATCGGCCGCCGCCGCCACCGCCACCGCCACCGCCATTGACCACGCGGGGGCTGCCTGCCAGTGCCAACAAGCCATGTCCATGCCGCCGCTGCTCAATCGGCTCGACACCGTCGACCGCTGCTTCGCCTTGGCCGCGTTGTCGACGTCCGACTTAGGCGGCATCAAGCGGAAGCTAGGGAGAGAGATGAGGTTTCTTGAGCTCTGGTGGGACGAGATCAGGGAGAAGTTCTATGGCGAGTTCGGGCAAACTATCGAACATGTCTGGTTCCCGATAGGCGAGATCAGGCGCCAGTATCGCACTCTTGCCGCTTCGCAAGACACCGTCGAGATCCTCCGTCTCATGGAGAGGATGCGAGACACGACGCACTCCCTGCTCAAGCACAACACTAGGCCGGGCACGGGCAGCGGCGGCGACGATGAAATCGCCGCGGAGCTTCCGCGGCGAGATGATGATGATGAGCTCAGCCTCATCTCCTTGCGGGCACATCTTACAAGCATCATCCGTCTTCTCACGGACGCCATCGTCCACGAGGACGCGTGCGAGGCCAAGCTCCTCCTGGACAAGATCCGAGCCGACCTTGGACGCCTCGAGGGCGCGTTCAACGACATCCACCAGAGCGAGAAGACCATCGAAGGCTCCTTCGGCGCCGTGCAGCACCTCGTCGACGAGCTGCTGCTCGACGCCGCGGCCGCGCCGGTGGCCACCTCGAGCCGGCAGGACCAGCTCAGCTGCCGCTGCCGCGGCCGCGGCCGCGGCAACGCCGGCCGCGCGCGCCGCCTCAAGTTGCTGGGGCGGCGCGCTAGAGAGCAGCTGGGAGACGCGGCGGCATCTGCAGCTCGCGTCGCGATGGACAGCCTCGACACGCGGCTCAAGCGCTGCCTCCTCTGCTTCGTCGTCTTCCCGGACGACGCGGCGATCAAGAGGAGGCTGCTCATCCACTGGTGGGTCGGGGAGCGCCTGGTCGACTCCGTCGACCAAGGGAAGGAGGTGTTCGACGAGCTCGTGTCCTCGACGGGGTTCGTCACGCCACTGCGGCGACCGCACTGCAGCAAGGTCCACGGCTGCAAGATTCAGCCATGGGTTCGCGTTCTGCTCGTAGCCTGTGCGCGGAGGAACGCTTTCCTCGACGGGGTTCGTCACGCCACTGCGGCGACCGCACTGCAGCAAGCCTGTGCGCGGAGGAACGCTTTCTTGGACCTCGACGCCAATGGCATGCCCAGGGACGACTTCGCCAGGACGCGCCGCGCCTGTCTCCGCGAAGGGAGGACGGTTGCCTCCGGCGCCGGCGCCGGCGGATTCCGTTGGGACGTGACGACGATATACAACGTCGACCGGCGGTACGTCGACCTGGACAAGTCGTGGTTCGCGCGGAAGGAAGAGCTGACCACATTGCAGCTCGGGACATGGAGGGACCACGGCTACGACCCCCGCGCGCACCACGTCGAGCTCATCAACGGCGAGCTCCTGCGCGGCATCGGCGCCTGTCGGAACATGAGTACCTCGACGTGTCGGGATGCTACCTTCTCGGCGAAATGCCCAGGGGATCGGGAAGCTCTCAAAGCTGCAGGTGATCAAGGGATTCGTGGTCGCCAACTCCAGCAGCAAGGACCCGTGCCGTCTCAGCGAGCTGCGCGCGCTAACGAGACGAGGCTGAGGAAGCTGAGCATCGTGATAGGCCGGACGGCCAGGCCGGAGGCGGACGAGGTGACGGCGCTCGCGAGCCTCCCCGCGCTCCGGTCGCTGACGATGACATGGAGCGGGGTGTCACCGGCGGAGCAAGATGGTCGAGATGCAACTGACAAGGTGGCGTTCGCGCTCCCGTCTGAGCTCGAGAAGCTGGACCTCCGGTGCTTCCCGCTGCCGGACTTCCCACGGTGGGCGGAGCCTCACCTGCTGCCGCGCCTGGAGAAGCTGTACGTTCGCGGCGGCATGATCACCGGCCTCGGCGAAGGCGGCGGCGGCTCGGCGGTGAAGGTGCTTCGGGTCAGGTTCCTCAGGCACCTCGACTATTCTTGGGAGAAGCTGCACGACGCATACGGGAAGCTTGAGATACTGGAGGTGTGCGAGTGCTCCAACGTGCAGGCTTGGCCTGCTTGTCGTGGTGGGCTTGGGCTTTGGAGGAAGGGAGAAGATTGCTAG

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Protein seq

MQQAFLERATKRSETDSDPDAEMGAMRTMILKVVKDMSPSFCCNFIPWQDLVEVENQERKTFAAVDEPHLQLPSVSNFSPPKSSMTNKKTQGERSTLAARAMSSLSWRMQSSSVSHSTSCNPTFLAVDRSAAAATATATAIDHAGAACQCQQAMSMPPLLNRLDTVDRCFALAALSTSDLGGIKRKLGREMRFLELWWDEIREKFYGEFGQTIEHVWFPIGEIRRQYRTLAASQDTVEILRLMERMRDTTHSLLKHNTRPGTGSGGDDEIAAELPRRDDDDELSLISLRAHLTSIIRLLTDAIVHEDACEAKLLLDKIRADLGRLEGAFNDIHQSEKTIEGSFGAVQHLVDELLLDAAAAPVATSSRQDQLSCRCRGRGRGNAGRARRLKLLGRRAREQLGDAAASAARVAMDSLDTRLKRCLLCFVVFPDDAAIKRRLLIHWWVGERLVDSVDQGKEVFDELVSSTGFVTPLRRPHCSKVHGCKIQPWVRVLLVACARRNAFLDGVRHATAATALQQACARRNAFLDLDANGMPRDDFARTRRACLREGRTVASGAGAGGFRWDVTTIYNVDRRYVDLDKSWFARKEELTTLQLGTWRDHGYDPRAHHVELINGELLRGIGACRNMSTSTCRDATFSAKCPGDREALKAAGDQGIRGRQLQQQGPVPSQRAARANETRLRKLSIVIGRTARPEADEVTALASLPALRSLTMTWSGVSPAEQDGRDATDKVAFALPSELEKLDLRCFPLPDFPRWAEPHLLPRLEKLYVRGGMITGLGEGGGGSAVKVLRVRFLRHLDYSWEKLHDAYGKLEILEVCECSNVQAWPACRGGLGLWRKGEDC

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os05g50790 LOC_Os05g50790.1 Chr05 29132047 29135068 + MSU_osa1r7
CDS seq

ATGCAGCAAGCATTTCTGGAACGGGCGACGAAGAGAAGTGAAACAGATAGTGATCCAGATGCCGAAATGGGGGCAATGAGAACAATGATCCTCAAAGTTGTCAAGGACATGTCTCCAAGCTTTTGCTGTAATTTCATCCCATGGCAGGACCTCGTCGAAGTAGAGAATCAGGAAAGGAAGACCTTCGCAGCGGTGGACGAACCACATCTGCAGCTACCATCCGTATCAAACTTTTCGCCACCGAAATCATCGATGACGAACAAGAAAACGCAGGGGGAGAGGAGCACCTTGGCGGCGCGGGCGATGTCGTCCCTGTCCTGGAGGATGCAGTCCTCCTCCGTGAGCCATTCCACCAGCTGCAATCCCACCTTTTTGGCAGTGGATCGATCGGCCGCCGCCGCCACCGCCACCGCCACCGCCATTGACCACGCGGGGGCTGCCTGCCAGTGCCAACAAGCCATGTCCATGCCGCCGCTGCTCAATCGGCTCGACACCGTCGACCGCTGCTTCGCCTTGGCCGCGTTGTCGACGTCCGACTTAGGCGGCATCAAGCGGAAGCTAGGGAGAGAGATGAGGTTTCTTGAGCTCTGGTGGGACGAGATCAGGGAGAAGTTCTATGGCGAGTTCGGGCAAACTATCGAACATGTCTGGTTCCCGATAGGCGAGATCAGGCGCCAGTATCGCACTCTTGCCGCTTCGCAAGACACCGTCGAGATCCTCCGTCTCATGGAGAGGATGCGAGACACGACGCACTCCCTGCTCAAGCACAACACTAGGCCGGGCACGGGCAGCGGCGGCGACGATGAAATCGCCGCGGAGCTTCCGCGGCGAGATGATGATGATGAGCTCAGCCTCATCTCCTTGCGGGCACATCTTACAAGCATCATCCGTCTTCTCACGGACGCCATCGTCCACGAGGACGCGTGCGAGGCCAAGCTCCTCCTGGACAAGATCCGAGCCGACCTTGGACGCCTCGAGGGCGCGTTCAACGACATCCACCAGAGCGAGAAGACCATCGAAGGCTCCTTCGGCGCCGTGCAGCACCTCGTCGACGAGCTGCTGCTCGACGCCGCGGCCGCGCCGGTGGCCACCTCGAGCCGGCAGGACCAGCTCAGCTGCCGCTGCCGCGGCCGCGGCCGCGGCAACGCCGGCCGCGCGCGCCGCCTCAAGTTGCTGGGGCGGCGCGCTAGAGAGCAGCTGGGAGACGCGGCGGCATCTGCAGCTCGCGTCGCGATGGACAGCCTCGACACGCGGCTCAAGCGCTGCCTCCTCTGCTTCGTCGTCTTCCCGGACGACGCGGCGATCAAGAGGAGGCTGCTCATCCACTGGTGGGTCGGGGAGCGCCTGGTCGACTCCGTCGACCAAGGGAAGGAGGTGTTCGACGAGCTCGTGTCCTCGACGGGGTTCGTCACGCCACTGCGGCGACCGCACTGCAGCAAGGTCCACGGCTGCAAGATTCAGCCATGGGTTCGCGTTCTGCTCGTAGCCTGTGCGCGGAGGAACGCTTTCCTCGACGGGGTTCGTCACGCCACTGCGGCGACCGCACTGCAGCAAGCCTGTGCGCGGAGGAACGCTTTCTTGGACCTCGACGCCAATGGCATGCCCAGGGACGACTTCGCCAGGACGCGCCGCGCCTGTCTCCGCGAAGGGAGGACGGTTGCCTCCGGCGCCGGCGCCGGCGGATTCCGTTGGGACGTGACGACGATATACAACGTCGACCGGCGGTACGTCGACCTGGACAAGTCGTGGTTCGCGCGGAAGGAAGAGCTGACCACATTGCAGCTCGGGACATGGAGGGACCACGGCTACGACCCCCGCGCGCACCACGTCGAGCTCATCAACGGCGAGCTCCTGCGCGGCATCGGCGCCTGTCGGAACATGAGTACCTCGACGTGTCGGGATGCTACCTTCTCGGCGAAATGCCCAGGGGATCGGGAAGCTCTCAAAGCTGCAGGTGATCAAGGGATTCGTGGTCGCCAACTCCAGCAGCAAGGACCCGTGCCGTCTCAGCGAGCTGCGCGCGCTAACGAGACGAGGCTGAGGAAGCTGAGCATCGTGATAGGCCGGACGGCCAGGCCGGAGGCGGACGAGGTGACGGCGCTCGCGAGCCTCCCCGCGCTCCGGTCGCTGACGATGACATGGAGCGGGGTGTCACCGGCGGAGCAAGATGGTCGAGATGCAACTGACAAGGTGGCGTTCGCGCTCCCGTCTGAGCTCGAGAAGCTGGACCTCCGGTGCTTCCCGCTGCCGGACTTCCCACGGTGGGCGGAGCCTCACCTGCTGCCGCGCCTGGAGAAGCTGTACGTTCGCGGCGGCATGATCACCGGCCTCGGCGAAGGCGGCGGCGGCTCGGCGGTGAAGGTGCTTCGGGTCAGGTTCCTCAGGCACCTCGACTATTCTTGGGAGAAGCTGCACGACGCATACGGGAAGCTTGAGATACTGGAGGTGTGCGAGTGCTCCAACGTGCAGGCTTGGCCTGCTTGTCGTGGTGGGCTTGGGCTTTGGAGGAAGGGAGAAGATTGCTAG

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Protein seq

MQQAFLERATKRSETDSDPDAEMGAMRTMILKVVKDMSPSFCCNFIPWQDLVEVENQERKTFAAVDEPHLQLPSVSNFSPPKSSMTNKKTQGERSTLAARAMSSLSWRMQSSSVSHSTSCNPTFLAVDRSAAAATATATAIDHAGAACQCQQAMSMPPLLNRLDTVDRCFALAALSTSDLGGIKRKLGREMRFLELWWDEIREKFYGEFGQTIEHVWFPIGEIRRQYRTLAASQDTVEILRLMERMRDTTHSLLKHNTRPGTGSGGDDEIAAELPRRDDDDELSLISLRAHLTSIIRLLTDAIVHEDACEAKLLLDKIRADLGRLEGAFNDIHQSEKTIEGSFGAVQHLVDELLLDAAAAPVATSSRQDQLSCRCRGRGRGNAGRARRLKLLGRRAREQLGDAAASAARVAMDSLDTRLKRCLLCFVVFPDDAAIKRRLLIHWWVGERLVDSVDQGKEVFDELVSSTGFVTPLRRPHCSKVHGCKIQPWVRVLLVACARRNAFLDGVRHATAATALQQACARRNAFLDLDANGMPRDDFARTRRACLREGRTVASGAGAGGFRWDVTTIYNVDRRYVDLDKSWFARKEELTTLQLGTWRDHGYDPRAHHVELINGELLRGIGACRNMSTSTCRDATFSAKCPGDREALKAAGDQGIRGRQLQQQGPVPSQRAARANETRLRKLSIVIGRTARPEADEVTALASLPALRSLTMTWSGVSPAEQDGRDATDKVAFALPSELEKLDLRCFPLPDFPRWAEPHLLPRLEKLYVRGGMITGLGEGGGGSAVKVLRVRFLRHLDYSWEKLHDAYGKLEILEVCECSNVQAWPACRGGLGLWRKGEDC

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU NA NA NA NA NA
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_05g0028620 RBH 0.0 0.0 0.0
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_05g0028410 RBH 0.0 0.0 0.0
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_05g0028410 RBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_05g0028470 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_05g0028360 RBH 0.0 0.0 0.0
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0455700 RBH 0.0245235 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_05g0028100 RBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0468600 RBH 0.017431 0 0.0060765
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_05g0028210 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_05g0028100 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_05g0028350 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_05g0028340 RBH 0.0 0.0 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_05g0028390 RBH 0.0 0.0 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_05G027900 RBH 0.0 0.0 0.0
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_05g0028420 RBH 0.0 0.0 0.0
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Huazhong Agricultural University

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