Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g50624 | OGI:05078570 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:29021762-29024098 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCCACGTTTCAGGGTTGTAGATGTTGAGACAATGGAGGGGGAGGTGTATGCTGTTTACCAGAAAGAAAAGGAAAACCTCACGCAAGCATTCAGCACTATGCCTGGAAGGATCAGCCTCACCATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTTCTGGGCAGTTTATTGACTCTGAGTGGAAGATACATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTGCAAGCCTTTCGGACTGGAATATGAAGGACAAACTGTTCACCATCACATTGGACAATGATTGCTCATCACATGATATATACAGTGCAAATCTGAGGGATTATCTCTCCAACAAGAACAACCTCATGCTCAAGGGCCAACTGTTTGTTGTAAGGTGTTATGCCCATATCCTGAATGCAGTTGCTCAGGATGTCATTGCTTCAATCCATGGTGTCATCTACAATATCCGTGAAAGCATCAAGTTCATAAAAGCTTCTCCTACCCGTGAGGAGAAGTTTGCAGAGATTGCTCTGCAGCTAGAGATCCCAAGTACCAAGACCCTTTGTCTGGATGTTACGACTCAGTGGAACACTACCTATCTCATGCTGCTGGCTGCCTTGGATTATAAGCAGGCCTTTTCTACTCTAGAGACAAGTGATGACAACTACAACGAGGCACCGTCCGCTGAGGACTGGAAAAAAGTTGAGGCTGCCTGCAATTACTTGAAGCTATTGTATGACTCAGCACATAGCATCATGGCTGCAGCAAATCCAACTTCAAATCTCTTTTTCCATGAGGCATGGAAACTTCAACTAGAGCTGTCAAATGCTACAGGGCATGAAGACCCTGTTTTCAGCAGCATTGCCAAGGATATGCACGAGAGGTTTGACAAGTACTGGAAAGATTGCAACCTTGTGTTAGCTATTGCTGTTGTGATGGATCCACGCTTCAAGATGAAGCTTGTTGAGTTCAGCTACTCGAAAATTTATGGTGTTGAAGCTGCGAAGTATGTTAAGGTGGTGGATGACGCTGTTCATGAGCTTTACAAGGAGTATGTTGCACAGCCCCTCCCCTTGACGCCGGCCTATGTTGAGCAAGGGGAAGGTAATAATGCACCTGCTAGCGAGAATAGTACTCAAACAACTGCTCCTTCGACCGGCGATGGACTTGTGGACTTTGATATGTACCTTTCTGAGATAGCTACAAGCCAGCCAACAAAATCTGAACTGGAACAGTACCTTGATGAGTCCCTCACTCCGCGCATCCAGGAATTCGACATTCTGAACTGGTGGAAGCTCAACACTCTCAAGTTCCCTACTCTCTCAAAGATGGCCCGGGATATCTTGGCCATTCCGATGTCGATGGTGAGCAGCGGCAACTCTATTTTCTCTGCTGGAACAGGAACTCGCATGCTTGATGACTACAGAAGCTCATTGCGTCCAGAAATTGTGGAGGCGCTCTTCTGCGCCAAAGACTGGCTTCAGTATTCACCAGCTACCCCGGAGGCGCCGAGTACCGCGCTGGTCAAGGTGGATGCACCATAGGATCGCCGTGATTCCCCCCCTTTTGTGAAGCAACAGCATGTACCAATGGTACCTATTTGTGAAGTTAACTGCTAGGCGTATTTTAGGCAGGGACTATGAACTGATTGTGATCTGAGCTTATCCTCCTAGGGTGTAATTTGTTGTATCGAACTCTGTTAACTCGTTCATGTTGTTATGTACGCTTTGTCTGTAGTATGCCATCAGAGTTGTACCTGATATTGCATGTAGTGTGCGCGCTGGCTGCATAATATTTATCAGCTGGTGCCTTATGTTTGTACTTCCCCTCATTATAATCCATTGTAGCATGTGATTGTTCTGTGCCTTTGTGATATGTCACATAGCTAAGGCAGCGTCGACACCTGCGTGCGGCTGGTTCAAGCGGCCGTAGCCGAACGAGGCGTCCATCCCTGAGTCCGGCGAGCCCGGCATGGCGCTGGACAATGGACAAGAGCTTCGGCTTCTCCAAGCACTTCGCCGCCAAGTACAAGTTTGGTTACACCTGCGCTGCCACCTGCAGAAGGGCGAGTTCAAGGGCGACGACGGTGACGTCGCCTTCAAGGTCAATCCAATCCCTTCTTTCTGTCCAGTTCACGACTTGTTCTCCTTCGCTGAGGTTTTGAGTCAATTTTCATGTTTATTTTCCTCGCTTGGGTTTAATTAATTAACACTTAAATCTTCTCCTGCATTGTTTAGTGTTTACACCTGATTGAATTCATATTATATTTCTGCTTGATTGTATTGTTTAATGCTAGACTGATGTTTTC
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| CDS seq | ATGGAGGGGGAGGTGTATGCTGTTTACCAGAAAGAAAAGGAAAACCTCACGCAAGCATTCAGCACTATGCCTGGAAGGATCAGCCTCACCATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTTCTGGGCAGTTTATTGACTCTGAGTGGAAGATACATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTGCAAGCCTTTCGGACTGGAATATGAAGGACAAACTGTTCACCATCACATTGGACAATGATTGCTCATCACATGATATATACAGTGCAAATCTGAGGGATTATCTCTCCAACAAGAACAACCTCATGCTCAAGGGCCAACTGTTTGTTGTAAGGTGTTATGCCCATATCCTGAATGCAGTTGCTCAGGATGTCATTGCTTCAATCCATGGTGTCATCTACAATATCCGTGAAAGCATCAAGTTCATAAAAGCTTCTCCTACCCGTGAGGAGAAGTTTGCAGAGATTGCTCTGCAGCTAGAGATCCCAAGTACCAAGACCCTTTGTCTGGATGTTACGACTCAGTGGAACACTACCTATCTCATGCTGCTGGCTGCCTTGGATTATAAGCAGGCCTTTTCTACTCTAGAGACAAGTGATGACAACTACAACGAGGCACCGTCCGCTGAGGACTGGAAAAAAGTTGAGGCTGCCTGCAATTACTTGAAGCTATTGTATGACTCAGCACATAGCATCATGGCTGCAGCAAATCCAACTTCAAATCTCTTTTTCCATGAGGCATGGAAACTTCAACTAGAGCTGTCAAATGCTACAGGGCATGAAGACCCTGTTTTCAGCAGCATTGCCAAGGATATGCACGAGAGGTTTGACAAGTACTGGAAAGATTGCAACCTTGTGTTAGCTATTGCTGTTGTGATGGATCCACGCTTCAAGATGAAGCTTGTTGAGTTCAGCTACTCGAAAATTTATGGTGTTGAAGCTGCGAAGTATGTTAAGGTGGTGGATGACGCTGTTCATGAGCTTTACAAGGAGTATGTTGCACAGCCCCTCCCCTTGACGCCGGCCTATGTTGAGCAAGGGGAAGGTAATAATGCACCTGCTAGCGAGAATAGTACTCAAACAACTGCTCCTTCGACCGGCGATGGACTTGTGGACTTTGATATGTACCTTTCTGAGATAGCTACAAGCCAGCCAACAAAATCTGAACTGGAACAGTACCTTGATGAGTCCCTCACTCCGCGCATCCAGGAATTCGACATTCTGAACTGGTGGAAGCTCAACACTCTCAAGTTCCCTACTCTCTCAAAGATGGCCCGGGATATCTTGGCCATTCCGATGTCGATGGTGAGCAGCGGCAACTCTATTTTCTCTGCTGGAACAGGAACTCGCATGCTTGATGACTACAGAAGCTCATTGCGTCCAGAAATTGTGGAGGCGCTCTTCTGCGCCAAAGACTGGCTTCAGTATTCACCAGCTACCCCGGAGGCGCCGAGTACCGCGCTGGTCAAGGTGGATGCACCATAG
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| Protein seq | MEGEVYAVYQKEKENLTQAFSTMPGRISLTIGLWTTSQTLGYVSLSGQFIDSEWKIHRRMLNFMMVSSPHSENALSEAISASLSDWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPTREEKFAEIALQLEIPSTKTLCLDVTTQWNTTYLMLLAALDYKQAFSTLETSDDNYNEAPSAEDWKKVEAACNYLKLLYDSAHSIMAAANPTSNLFFHEAWKLQLELSNATGHEDPVFSSIAKDMHERFDKYWKDCNLVLAIAVVMDPRFKMKLVEFSYSKIYGVEAAKYVKVVDDAVHELYKEYVAQPLPLTPAYVEQGEGNNAPASENSTQTTAPSTGDGLVDFDMYLSEIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKFPTLSKMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALFCAKDWLQYSPATPEAPSTALVKVDAP |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g50624 | LOC_Os05g50624.1 | Chr05 | 29021762 | 29024098 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGGGGGAGGTGTATGCTGTTTACCAGAAAGAAAAGGAAAACCTCACGCAAGCATTCAGCACTATGCCTGGAAGGATCAGCCTCACCATTGGATTGTGGACAACTAGCCAAACTCTTGGCTATGTTTCACTTTCTGGGCAGTTTATTGACTCTGAGTGGAAGATACATCGAAGAATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTGCAAGCCTTTCGGACTGGAATATGAAGGACAAACTGTTCACCATCACATTGGACAATGATTGCTCATCACATGATATATACAGTGCAAATCTGAGGGATTATCTCTCCAACAAGAACAACCTCATGCTCAAGGGCCAACTGTTTGTTGTAAGGTGTTATGCCCATATCCTGAATGCAGTTGCTCAGGATGTCATTGCTTCAATCCATGGTGTCATCTACAATATCCGTGAAAGCATCAAGTTCATAAAAGCTTCTCCTACCCGTGAGGAGAAGTTTGCAGAGATTGCTCTGCAGCTAGAGATCCCAAGTACCAAGACCCTTTGTCTGGATGTTACGACTCAGTGGAACACTACCTATCTCATGCTGCTGGCTGCCTTGGATTATAAGCAGGCCTTTTCTACTCTAGAGACAAGTGATGACAACTACAACGAGGCACCGTCCGCTGAGGACTGGAAAAAAGTTGAGGCTGCCTGCAATTACTTGAAGCTATTGTATGACTCAGCACATAGCATCATGGCTGCAGCAAATCCAACTTCAAATCTCTTTTTCCATGAGGCATGGAAACTTCAACTAGAGCTGTCAAATGCTACAGGGCATGAAGACCCTGTTTTCAGCAGCATTGCCAAGGATATGCACGAGAGGTTTGACAAGTACTGGAAAGATTGCAACCTTGTGTTAGCTATTGCTGTTGTGATGGATCCACGCTTCAAGATGAAGCTTGTTGAGTTCAGCTACTCGAAAATTTATGGTGTTGAAGCTGCGAAGTATGTTAAGGTGGTGGATGACGCTGTTCATGAGCTTTACAAGGAGTATGTTGCACAGCCCCTCCCCTTGACGCCGGCCTATGTTGAGCAAGGGGAAGGTAATAATGCACCTGCTAGCGAGAATAGTACTCAAACAACTGCTCCTTCGACCGGCGATGGACTTGTGGACTTTGATATGTACCTTTCTGAGATAGCTACAAGCCAGCCAACAAAATCTGAACTGGAACAGTACCTTGATGAGTCCCTCACTCCGCGCATCCAGGAATTCGACATTCTGAACTGGTGGAAGCTCAACACTCTCAAGTTCCCTACTCTCTCAAAGATGGCCCGGGATATCTTGGCCATTCCGATGTCGATGGTGAGCAGCGGCAACTCTATTTTCTCTGCTGGAACAGGAACTCGCATGCTTGATGACTACAGAAGCTCATTGCGTCCAGAAATTGTGGAGGCGCTCTTCTGCGCCAAAGACTGGCTTCAGTATTCACCAGCTACCCCGGAGGCGCCGAGTACCGCGCTGGTCAAGGTGGATGCACCATAG
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| Protein seq | MEGEVYAVYQKEKENLTQAFSTMPGRISLTIGLWTTSQTLGYVSLSGQFIDSEWKIHRRMLNFMMVSSPHSENALSEAISASLSDWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPTREEKFAEIALQLEIPSTKTLCLDVTTQWNTTYLMLLAALDYKQAFSTLETSDDNYNEAPSAEDWKKVEAACNYLKLLYDSAHSIMAAANPTSNLFFHEAWKLQLELSNATGHEDPVFSSIAKDMHERFDKYWKDCNLVLAIAVVMDPRFKMKLVEFSYSKIYGVEAAKYVKVVDDAVHELYKEYVAQPLPLTPAYVEQGEGNNAPASENSTQTTAPSTGDGLVDFDMYLSEIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKFPTLSKMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALFCAKDWLQYSPATPEAPSTALVKVDAP
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g50624 | LOC_Os05g50624.2 | Chr05 | 29021911 | 29023638 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTAAACTTCATGATGGTGTCTTCTCCTCATTCAGAGAATGCACTTAGTGAAGCTATTAGTGCAAGCCTTTCGGACTGGAATATGAAGGACAAACTGTTCACCATCACATTGGACAATGATTGCTCATCACATGATATATACAGTGCAAATCTGAGGGATTATCTCTCCAACAAGAACAACCTCATGCTCAAGGGCCAACTGTTTGTTGTAAGGTGTTATGCCCATATCCTGAATGCAGTTGCTCAGGATGTCATTGCTTCAATCCATGGTGTCATCTACAATATCCGTGAAAGCATCAAGTTCATAAAAGCTTCTCCTACCCGTGAGGAGAAGTTTGCAGAGATTGCTCTGCAGCTAGAGATCCCAAGTACCAAGACCCTTTGTCTGGATGTTACGACTCAGTGGAACACTACCTATCTCATGCTGCTGGCTGCCTTGGATTATAAGCAGGCCTTTTCTACTCTAGAGACAAGTGATGACAACTACAACGAGGCACCGTCCGCTGAGGACTGGAAAAAAGTTGAGGCTGCCTGCAATTACTTGAAGCTATTGTATGACTCAGCACATAGCATCATGGCTGCAGCAAATCCAACTTCAAATCTCTTTTTCCATGAGGCATGGAAACTTCAACTAGAGCTGTCAAATGCTACAGGGCATGAAGACCCTGTTTTCAGCAGCATTGCCAAGGATATGCACGAGAGGTTTGACAAGTACTGGAAAGATTGCAACCTTGTGTTAGCTATTGCTGTTGTGATGGATCCACGCTTCAAGATGAAGCTTGTTGAGTTCAGCTACTCGAAAATTTATGGTGTTGAAGCTGCGAAGTATGTTAAGGTGGTGGATGACGCTGTTCATGAGCTTTACAAGGAGTATGTTGCACAGCCCCTCCCCTTGACGCCGGCCTATGTTGAGCAAGGGGAAGGTAATAATGCACCTGCTAGCGAGAATAGTACTCAAACAACTGCTCCTTCGACCGGCGATGGACTTGTGGACTTTGATATGTACCTTTCTGAGATAGCTACAAGCCAGCCAACAAAATCTGAACTGGAACAGTACCTTGATGAGTCCCTCACTCCGCGCATCCAGGAATTCGACATTCTGAACTGGTGGAAGCTCAACACTCTCAAGTTCCCTACTCTCTCAAAGATGGCCCGGGATATCTTGGCCATTCCGATGTCGATGGTGAGCAGCGGCAACTCTATTTTCTCTGCTGGAACAGGAACTCGCATGCTTGATGACTACAGAAGCTCATTGCGTCCAGAAATTGTGGAGGCGCTCTTCTGCGCCAAAGACTGGCTTCAGTATTCACCAGCTACCCCGGAGGCGCCGAGTACCGCGCTGGTCAAGGTGGATGCACCATAG
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| Protein seq | MLNFMMVSSPHSENALSEAISASLSDWNMKDKLFTITLDNDCSSHDIYSANLRDYLSNKNNLMLKGQLFVVRCYAHILNAVAQDVIASIHGVIYNIRESIKFIKASPTREEKFAEIALQLEIPSTKTLCLDVTTQWNTTYLMLLAALDYKQAFSTLETSDDNYNEAPSAEDWKKVEAACNYLKLLYDSAHSIMAAANPTSNLFFHEAWKLQLELSNATGHEDPVFSSIAKDMHERFDKYWKDCNLVLAIAVVMDPRFKMKLVEFSYSKIYGVEAAKYVKVVDDAVHELYKEYVAQPLPLTPAYVEQGEGNNAPASENSTQTTAPSTGDGLVDFDMYLSEIATSQPTKSELEQYLDESLTPRIQEFDILNWWKLNTLKFPTLSKMARDILAIPMSMVSSGNSIFSAGTGTRMLDDYRSSLRPEIVEALFCAKDWLQYSPATPEAPSTALVKVDAP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.041850 | 3.005957 | 1.732524 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0583100 | RBH | 7.728558 | 4.752480 | 6.466660 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43010 | RBH | 0.084548 | 0.107881 | 0.144865 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0583100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0013220 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0013260 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0013100 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0013140 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0013230 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0454100 | SBH | 0.236369 | 1.918577 | 0.4738225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0012880 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0466900 | RBH | 17.326869 | 25.055609 | 52.5724335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0013170 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0013100 | SBH | 0.0 | 0.0 | 0.0 |
