Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g50310 | OGI:05078070 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:28835774-28836869 | ||||||||
| Gene Symbol | OsZHD6 | ||||||||||
| DNA seq | TAACCCAAAGCCATCCAGCACTTTGCGAGGTCGCTTTCGTTTCGCCTCCTTCGTCGGCCCCGGACCGGACCGGACAGAGGCATGTCCTGATGGAATTCAGGGGCCATGACGAACCCGTCGACGAGATGGGAGTCGCGTACGGCAGGACGCCACCCTCCTCCTCCTCCTCCCCCGCCGCCTCCGCCTCCGCGGGGAACGGCGCCGGCGCGGCGGAGGTGAGGTACCACGAGTGCCTGCGCAACCACGCCGCGGCGATGGGCGGCCACGTCGTGGACGGATGCAGGGAGTTCATGCCGATGCCGGGGGACGCCGCCGACGCCCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAAGGACGACGGGCAGCAGCAGCAGCAGCTGCGCCTGCTCATCCCGTCCCCGCCCACGCCGCGCGTCCCGCTGCTCATGCCGCCGCCGCAGCCGCAGCCGCACCCGCACCCGCAACACCCCTACCTGCACCCGCCGTTCCCGTACCACCACACCCCAAGCGGCAGCGGCGGCACGACGACCGAGTCGTCCAGCGAGGAGCGGGGGCCTCCCTCCTCGTCGGCGGCGGCGGCGCAGGGGCGGCGGAAGCGGTTCCGGACCAAGTTCACGCCGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGGGTGGGGTGGCGGATGCAGAAGCAGGACGAGGCACTCGTCGAACAGTTCTGCGCGCAGGTCGGCGTGCGGCGCCAGGTGTTCAAGGTGTGGATGCACAACAACAAGAGCAGCATCGGCAGCAGCAGCGGCGGCGGCAGTAGGAGGCAGCCGCAGGAGCAACAGTCACAACAGCAGCAGCAGCAGCAGTAGCCATGGGAGGAGACAAGCATTTGGTTAATGGTTTGGTAAATCCCCACCTCATTATTTTTATACGCCCAAGACATGAGGAGACGGGTTAAACAACGCAACGGAAGTGAGGACTACTCTCTCTGCGATCTTTATCCTCTCTCTCTCTCTCTCTCTCTCTTCATTTGGCCTTAACCTTCATTCTTTGTAGTCACTTATCCTCCTCCATAATTTGGTTCTTGATTCTAGCCTTGTTCAATTTG
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| CDS seq | ATGGAATTCAGGGGCCATGACGAACCCGTCGACGAGATGGGAGTCGCGTACGGCAGGACGCCACCCTCCTCCTCCTCCTCCCCCGCCGCCTCCGCCTCCGCGGGGAACGGCGCCGGCGCGGCGGAGGTGAGGTACCACGAGTGCCTGCGCAACCACGCCGCGGCGATGGGCGGCCACGTCGTGGACGGATGCAGGGAGTTCATGCCGATGCCGGGGGACGCCGCCGACGCCCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAAGGACGACGGGCAGCAGCAGCAGCAGCTGCGCCTGCTCATCCCGTCCCCGCCCACGCCGCGCGTCCCGCTGCTCATGCCGCCGCCGCAGCCGCAGCCGCACCCGCACCCGCAACACCCCTACCTGCACCCGCCGTTCCCGTACCACCACACCCCAAGCGGCAGCGGCGGCACGACGACCGAGTCGTCCAGCGAGGAGCGGGGGCCTCCCTCCTCGTCGGCGGCGGCGGCGCAGGGGCGGCGGAAGCGGTTCCGGACCAAGTTCACGCCGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGGGTGGGGTGGCGGATGCAGAAGCAGGACGAGGCACTCGTCGAACAGTTCTGCGCGCAGGTCGGCGTGCGGCGCCAGGTGTTCAAGGTGTGGATGCACAACAACAAGAGCAGCATCGGCAGCAGCAGCGGCGGCGGCAGTAGGAGGCAGCCGCAGGAGCAACAGTCACAACAGCAGCAGCAGCAGCAGTAG
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| Protein seq | MEFRGHDEPVDEMGVAYGRTPPSSSSSPAASASAGNGAGAAEVRYHECLRNHAAAMGGHVVDGCREFMPMPGDAADALKCAACGCHRSFHRKDDGQQQQQLRLLIPSPPTPRVPLLMPPPQPQPHPHPQHPYLHPPFPYHHTPSGSGGTTTESSSEERGPPSSSAAAAQGRRKRFRTKFTPEQKEQMLAFAERVGWRMQKQDEALVEQFCAQVGVRRQVFKVWMHNNKSSIGSSSGGGSRRQPQEQQSQQQQQQQ |
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| Function | Zinc-finger homeodomain protein 6 [UniProtKB/Swiss-Prot:Q688U3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g50310 | LOC_Os05g50310.1 | Chr05 | 28835774 | 28836869 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAATTCAGGGGCCATGACGAACCCGTCGACGAGATGGGAGTCGCGTACGGCAGGACGCCACCCTCCTCCTCCTCCTCCCCCGCCGCCTCCGCCTCCGCGGGGAACGGCGCCGGCGCGGCGGAGGTGAGGTACCACGAGTGCCTGCGCAACCACGCCGCGGCGATGGGCGGCCACGTCGTGGACGGATGCAGGGAGTTCATGCCGATGCCGGGGGACGCCGCCGACGCCCTCAAGTGCGCCGCCTGCGGCTGCCACCGCAGCTTCCACCGCAAGGACGACGGGCAGCAGCAGCAGCAGCTGCGCCTGCTCATCCCGTCCCCGCCCACGCCGCGCGTCCCGCTGCTCATGCCGCCGCCGCAGCCGCAGCCGCACCCGCACCCGCAACACCCCTACCTGCACCCGCCGTTCCCGTACCACCACACCCCAAGCGGCAGCGGCGGCACGACGACCGAGTCGTCCAGCGAGGAGCGGGGGCCTCCCTCCTCGTCGGCGGCGGCGGCGCAGGGGCGGCGGAAGCGGTTCCGGACCAAGTTCACGCCGGAGCAGAAGGAGCAGATGCTGGCGTTCGCGGAGCGGGTGGGGTGGCGGATGCAGAAGCAGGACGAGGCACTCGTCGAACAGTTCTGCGCGCAGGTCGGCGTGCGGCGCCAGGTGTTCAAGGTGTGGATGCACAACAACAAGAGCAGCATCGGCAGCAGCAGCGGCGGCGGCAGTAGGAGGCAGCCGCAGGAGCAACAGTCACAACAGCAGCAGCAGCAGCAGTAG
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| Protein seq | MEFRGHDEPVDEMGVAYGRTPPSSSSSPAASASAGNGAGAAEVRYHECLRNHAAAMGGHVVDGCREFMPMPGDAADALKCAACGCHRSFHRKDDGQQQQQLRLLIPSPPTPRVPLLMPPPQPQPHPHPQHPYLHPPFPYHHTPSGSGGTTTESSSEERGPPSSSAAAAQGRRKRFRTKFTPEQKEQMLAFAERVGWRMQKQDEALVEQFCAQVGVRRQVFKVWMHNNKSSIGSSSGGGSRRQPQEQQSQQQQQQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.547695 | 0.230472 | 0.112771 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0579300 | RBH | 0.809898 | 0.342667 | 0.438083 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g44430 | RBH | 0.302908 | 0.549414 | 4.301448 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0579300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028240 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028040 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028090 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027980 | RBH | 0.000000 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0450300 | RBH | 1.3160455 | 2.865705 | 8.319533 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027680 | RBH | 0.0 | 0.000000 | 0.170812 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0463600 | RBH | 3.2980035 | 1.406285 | 19.350563 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027810 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_Ung0000070 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0027930 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027950 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0027980 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027490 | RBH | 0.0 | 0.0 | 0.596968 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027950 | RBH | 0.0 | 10.301612 | 1.239991 |
