Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g50080 | OGI:05077730 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:28702233-28704507 | ||||||||
| Gene Symbol | C3H39, OsC3H39 | ||||||||||
| DNA seq | AGATTGCCAGAGAGATTCAGAGGCAGAGCCGCGAGCCCCACGACACCCTCCTCCTCCTCTCCCTATCCCCTTCTCCCCCAAATCATCCTTCTCAAAATCAAAGGCTCCGGGTGGTGAGCGCTAATCGAGAGGTGTGCTGCTTGATCCAATCTACACTTGGGGTTAACCGCTTGGTGATTTAGTTGCGCTTGCGCCACTAGTTAGTTAATCAGTGGATAGTTGGGGGTTGGGCGTGCTGTTCTGCTCCACTTGGGATGCGAGTTTGATCGATTTTGCTTTTTTATTTTTTAAGCTTGCTGTTTCTCGTGCTGCATTGGTGAGAAACTAGTTTTTGTTCGTGGATTCAGCGTTTTCTTCGCGATCAGGCGTCCGGTTCCGTTTTTTCTTAGCGTTTTTGTCCCGTTTTTTGGTGTGGAATCAGTCTGGTTCTCGATTTAGAAACTAGTTGATTACTTGTTCTCACTGTTACAGTGGATGAGATCGCGTCTTCGAATGCGATTTTTGATTGCTTCCATGATACGATTTTCCTGTTCTCAGAGCTAGATTCTGTGGAAAGCATCTCTACTTTTTTTTTATTTTGGTTCGCTTCGTGTGGAGAATTTAGTGTGATTTTTGTTGGAATTTTCATTGACATTTTGATCCGTTTACTTGCAGGGATTAGTTGTTCGCGGAGATCGCCGCTATGCAGGAAGCTCTTCTACCTCCGGCTCATCCAGGCCGCTTCTACTCGGACTTTGGCCCGAAGCCGTTCGGCAGCGGAGATCAACGGCTCTCCTCGCCCAACCTGCTGACCAACGGTGGAGATCTCTTCTACGGCTGCTACTCCCCCTTCAGCCCTACCCGCGTGCTCTCGCCGCCGCCGCCGCGGCGCGCCGCCTCGTTCTCCCACTGCTCGTCCTCCTCCGACTCCGTCGTCGACGACGGAGATGGTGCGGGGGCAGCGGCAGCGACCGAGCACCGCCTCCACCTCGCCCACCTCGCGCTCCAGTACCAGGAGATGGCCAACCGCTTCGAGCTCTGCCTCTCCCACCTCGCCGATGCCGCGGACGAGGCGGCCGCGCTCCGTCAGGAGAACGCCGAGCTCCGCGTCGCCAACAACGACCTCGCATGCCGCATCGCCAAGTTCGGCGGAAGGCAGAGCTCCGCCATCGCCCTCGCCGGTGACCTCCGCCGCCTCCGCCTCCCCAAGGAGCAGACCGTGCCAGCTCTTCCTCCTCCGCCGCAGTCTCCGCCGGCCGCACTGATGAATCCCGTCGCCGTCCCCGAGAAGCAGGCTGTTCTTCCGAAGAGCATCTCCATCCGTTCGACCGGATACCAGAAGCTGAACCAGGGCGGCAAGCATCGCGTGTCGAAGCCGGTGAACGTCGGCTCGGTGAGACCAAATCCCCCAATTCCTCCATTGTGTTGTGTCTGGCTCCCACTCTTGCAGCGCACTGACTCCTGTGCTGAATCCAAAATCCCAATCCTAACTAGTACGATGTTCTTGATGCGACAATGCAAGCAGCAGCGCGTGTTCGTGGGCATTGACGGCGCGGAGGGAGGCGAGCACAAAGTTGGTGTGAAGAAGGAGGAGCCGCCCATGGGTGGGCTGGAGTTCGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCTTGCCCCTACGGCGACCAGTGCCAGTTCGCCCACGGCGTCGCGGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCATCACCCCCGCCGACCGCTTCTCCTTCGGCCATTGATCATACGTGTCAGTCCATCACCGATCGCCACTCTCTCACTCCCTCCTAATCTCCTCTCTCTTTGATAATGACATGAAAAGAGGGGGAAAAAAAGAAGAGGCCGTAAATAAGGTATACTATTTAGTTGCACAAAGCAAATGAGAACTGAATTATACAATTAGCACACAGGCGAAATGTGAATACTAGAGAGTTATAGCTATTAAGTTGTGGTCAGATATGTGAGTTATTACATTGGGGGTTATTTGTCCTATGGTTCATATTGTTATATAGGTTATTATGATCTTGTTTCCTTGTTTCGTTTTAAGCAAACCGGGTGACAAATTGTTGGACTCATGTAAGTAAGGCTGTTATTTGGATATCTGAATTATGTATGGAACACTTGTACGCTATGAAAGTGCCTGAAGGCTGTTATTTGCAATTTGATTGATG
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| CDS seq | ATGCAGGAAGCTCTTCTACCTCCGGCTCATCCAGGCCGCTTCTACTCGGACTTTGGCCCGAAGCCGTTCGGCAGCGGAGATCAACGGCTCTCCTCGCCCAACCTGCTGACCAACGGTGGAGATCTCTTCTACGGCTGCTACTCCCCCTTCAGCCCTACCCGCGTGCTCTCGCCGCCGCCGCCGCGGCGCGCCGCCTCGTTCTCCCACTGCTCGTCCTCCTCCGACTCCGTCGTCGACGACGGAGATGGTGCGGGGGCAGCGGCAGCGACCGAGCACCGCCTCCACCTCGCCCACCTCGCGCTCCAGTACCAGGAGATGGCCAACCGCTTCGAGCTCTGCCTCTCCCACCTCGCCGATGCCGCGGACGAGGCGGCCGCGCTCCGTCAGGAGAACGCCGAGCTCCGCGTCGCCAACAACGACCTCGCATGCCGCATCGCCAAGTTCGGCGGAAGGCAGAGCTCCGCCATCGCCCTCGCCGGTGACCTCCGCCGCCTCCGCCTCCCCAAGGAGCAGACCGTGCCAGCTCTTCCTCCTCCGCCGCAGTCTCCGCCGGCCGCACTGATGAATCCCGTCGCCGTCCCCGAGAAGCAGGCTGTTCTTCCGAAGAGCATCTCCATCCGTTCGACCGGATACCAGAAGCTGAACCAGGGCGGCAAGCATCGCGTGTCGAAGCCGGTGAACGTCGGCTCGCAGCGCGTGTTCGTGGGCATTGACGGCGCGGAGGGAGGCGAGCACAAAGTTGGTGTGAAGAAGGAGGAGCCGCCCATGGGTGGGCTGGAGTTCGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCTTGCCCCTACGGCGACCAGTGCCAGTTCGCCCACGGCGTCGCGGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCATCACCCCCGCCGACCGCTTCTCCTTCGGCCATTGA
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| Protein seq | MQEALLPPAHPGRFYSDFGPKPFGSGDQRLSSPNLLTNGGDLFYGCYSPFSPTRVLSPPPPRRAASFSHCSSSSDSVVDDGDGAGAAAATEHRLHLAHLALQYQEMANRFELCLSHLADAADEAAALRQENAELRVANNDLACRIAKFGGRQSSAIALAGDLRRLRLPKEQTVPALPPPPQSPPAALMNPVAVPEKQAVLPKSISIRSTGYQKLNQGGKHRVSKPVNVGSQRVFVGIDGAEGGEHKVGVKKEEPPMGGLEFEVYNQGMFKTELCNKWEETGACPYGDQCQFAHGVAELRPVIRHPRYKTQVCRMVLAGGVCPYGHRCHFRHSITPADRFSFGH |
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| Function | Zinc finger CCCH domain-containing protein 39 [UniProtKB/Swiss-Prot:Q6L5G1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g50080 | LOC_Os05g50080.1 | Chr05 | 28702233 | 28704507 | + | MSU_osa1r7 | ||
| CDS seq | ATGCAGGAAGCTCTTCTACCTCCGGCTCATCCAGGCCGCTTCTACTCGGACTTTGGCCCGAAGCCGTTCGGCAGCGGAGATCAACGGCTCTCCTCGCCCAACCTGCTGACCAACGGTGGAGATCTCTTCTACGGCTGCTACTCCCCCTTCAGCCCTACCCGCGTGCTCTCGCCGCCGCCGCCGCGGCGCGCCGCCTCGTTCTCCCACTGCTCGTCCTCCTCCGACTCCGTCGTCGACGACGGAGATGGTGCGGGGGCAGCGGCAGCGACCGAGCACCGCCTCCACCTCGCCCACCTCGCGCTCCAGTACCAGGAGATGGCCAACCGCTTCGAGCTCTGCCTCTCCCACCTCGCCGATGCCGCGGACGAGGCGGCCGCGCTCCGTCAGGAGAACGCCGAGCTCCGCGTCGCCAACAACGACCTCGCATGCCGCATCGCCAAGTTCGGCGGAAGGCAGAGCTCCGCCATCGCCCTCGCCGGTGACCTCCGCCGCCTCCGCCTCCCCAAGGAGCAGACCGTGCCAGCTCTTCCTCCTCCGCCGCAGTCTCCGCCGGCCGCACTGATGAATCCCGTCGCCGTCCCCGAGAAGCAGGCTGTTCTTCCGAAGAGCATCTCCATCCGTTCGACCGGATACCAGAAGCTGAACCAGGGCGGCAAGCATCGCGTGTCGAAGCCGGTGAACGTCGGCTCGCAGCGCGTGTTCGTGGGCATTGACGGCGCGGAGGGAGGCGAGCACAAAGTTGGTGTGAAGAAGGAGGAGCCGCCCATGGGTGGGCTGGAGTTCGAGGTGTACAACCAGGGCATGTTCAAGACGGAGCTGTGCAACAAGTGGGAGGAGACCGGGGCTTGCCCCTACGGCGACCAGTGCCAGTTCGCCCACGGCGTCGCGGAGCTCCGCCCCGTCATCCGCCACCCTCGCTACAAGACCCAGGTCTGCCGCATGGTGCTCGCCGGCGGCGTCTGCCCCTACGGCCACCGCTGCCACTTCCGCCACTCCATCACCCCCGCCGACCGCTTCTCCTTCGGCCATTGA
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| Protein seq | MQEALLPPAHPGRFYSDFGPKPFGSGDQRLSSPNLLTNGGDLFYGCYSPFSPTRVLSPPPPRRAASFSHCSSSSDSVVDDGDGAGAAAATEHRLHLAHLALQYQEMANRFELCLSHLADAADEAAALRQENAELRVANNDLACRIAKFGGRQSSAIALAGDLRRLRLPKEQTVPALPPPPQSPPAALMNPVAVPEKQAVLPKSISIRSTGYQKLNQGGKHRVSKPVNVGSQRVFVGIDGAEGGEHKVGVKKEEPPMGGLEFEVYNQGMFKTELCNKWEETGACPYGDQCQFAHGVAELRPVIRHPRYKTQVCRMVLAGGVCPYGHRCHFRHSITPADRFSFGH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.101915 | 0.080907 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0576300 | RBH | 0.151925 | 0.101310 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45730 | RBH | 0.0 | 0.0 | 0.153300 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0576300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028020 | RBH | 0.236435 | 6.228842 | 2.729902 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0027820 | RBH | 0.0 | 1.978797 | 0.198532 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027830 | RBH | 0.262070 | 4.152845 | 3.914080 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027870 | RBH | 0.0 | 0.036706 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027770 | RBH | 0.0 | 0.0 | 3.276392 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0448000 | RBH | 0.359675 | 1.4027985 | 0.354657 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027460 | RBH | 0.0 | 0.249530 | 0.153385 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0461000 | RBH | 0.4415455 | 0.952966 | 1.399174 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027600 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027490 | RBH | 0.0 | 1.879926 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0027720 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027740 | RBH | 0.0 | 0.281686 | 0.143254 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0027750 | RBH | 0.0 | 1.725787 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027270 | RBH | 0.0 | 0.0 | 1.321575 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027730 | RBH | 0.0 | 0.0 | 1.953738 |
