Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g49740 | OGI:05077210 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:28534151-28536925 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTGATCAAAATAGTTAACAAAGACATTGGTTGCTCTGCTACTTAGTCAACAAATCCGCAAATGGGAAAGCAATAGCATATCCTCCCTTGTTAGTCGTTAAAATAATTCACATATTTACATCTTTTAACTTTGTTCTTCAAAAAAATGATTGCATTTCCATGTCCATGTCCTAACTTCACTTGTCCTCTGGAGCTGCGACTTTAATGACTCTCTGGTCCCACCTCAACATTTATACTCAGCAAAAATGCTCTTGAATCACATATATGGCCAATCAGCTCCATTCAGCTGATTCACGAGGCTTTATGCAATCGACCTTTGAGAACCACATATTATATAGTTTTTTTTTAAGAAAGGGCAAAAGCTTTGCCACTTTTATATTGACATATTATATAGATTGAATCACCAATAGTCATCACATGAGCAGACTCCATCTTCTATACAATGAAACCGAACAGTGTCCCTTACAACTATTCTTCTGCCTGTGGCAAGTGAAATGAGTTTGATGGCAACATGGCAATCATCACATATCCTGACGTTTTTCATTATACGAATAGCTTCTCCCTTGGGGGTGCGAATAAGGCCAAATGCAAGAGCTAATTTCTCACTGTGATACATAAGATGTTCTTCCTTTTGTTCATCCTCAACATCATGTAGGGCCACTGCAATGTTTGGAACATATCCAATCACTTTTATCTTGTCTATCAGCTCTTGGAGTTTTTTGGTGATCTGCTCCATATATGGGTGTTTTTTGTCCTCAGATGTGAAAACATGGACCTCACTACCCACTTGAATCCAACTAACACCAGGCTCCTTCCTAACGCCCAACTCTCTCATCAGCCTCCGAACCTTCACGACACCATCCCACCGGTTTGCTTTCGCATACATATTAGAAAGCAAAACATAGGTTCCAACATCTTTGGGCTTTAACTGAAAAATCTGTTCAGCTACTCGATGACCAAGACCATAATTTCTATATACTTGGCAAGAACTTAGAAGTGATCTCCATGCAACAACATCGGTACCAATGCAGTTACTTTCTATGAATCGTTCTGCCTCGTCAAGCCGTCCAACTCTGCACAGCAAACCGACCATGCAAGTGTAATGTTCCTTACCAGGTTTTACTCCCACTTCCTTCATCATAATATTCAGGTAGTAGAACCCTTCATCTACAAGACCCAACTGAGCACAGGCTGACAGCACCCCAATGAAAGTTACATAAGATGGGACTTCTTCTGCAAACAACATATCATGAAATGCTTCCATGGCTTCTCTTGCACGGCCATGATGAGCGTAGCCAATGATGATTGAATTCCAAGAAACCACATCACGACATGGCATAGAAAGGAAGACTCTCCGTGCATCCTCAACACTGCCACTCTTTGAGTACATGTTCATGAGGGCATTACAGACAGGCAAAAGGCCCCAATGCCCAGTTTTCATAGTACATGCACCAAGGGCATTACCATTTTTCAAGGTGGCAAGACCAGCGCAACTGTTGAGAGCAACAGCATAAGTGAACTCATTAGGCCGAACTCCTTCCATTTCCATATCCAAGAACAACTGCAATGCATCTTCAAACAGCTCATTTTGTGTATAAGCAGTCATAATGGCTGTCCAGGAAACAATATTCTTTTCTGGCAAAACCTCAAACACGCGATTAGCTTCATGGGGAAAGTCACATTTCCCATACATATCAACGAGTGCACTCCCCACATACACATTCAGCTCAAGCCTCCTCTTCAACGCTTGGGTATGCACCTGACTCCCAAGCACCACCTCTTTCGTGCTAGCACAATGCCCAAGAACTGCGACATATGACACATGATCCCATTGCCCGACATTTCTCACCATGCTTCTTACTATACTGGTGGAACCATCCATCTGGCCCCGATCAAGAAACCCATTTATCATTGAGTTGAACGCGAATACATTAAAACTGGAAACATTATCAAATACCTTCACCGCTTCGTCCATGTGTGCACATTGGCAATACATATGCAGCACCGCACTACAAACGTAAGGGTGCTCTGCTAGTCCAGCCTTGATAGCATATCCATGGCACTGCCTCCCCATATCATAGCTCCGGACATGGGCAGTCGCGGCCACAGCCGACGACAGCACGTACTCATTCAGACCAAAGTCAGCCACCCTGAGGAGCGCGAGGGCGTCCCTGTGGCGCCCGGAAGAAGCGTACCCGGACATGAGCAGGTTCCCAGACACGGGGTTCCGGGAGGGCATTGCGTCGAACACCTGGCGGGCGAGGCCTAGGCGGCCGCACTTGACGTACAGGGCAATGAGGTTGTTGTACTGGACGACGTCGAAGCGCGCGGCCCTGACAACCCTCGCGTGAACCGCCTTCCCTAACGAAAGCTCGCCGGCGGCGGCGGCGGCGCGGAGCACGGCAACGGCCGCGCGCCGCTGGTCGACCGATACTCCCATAGGGCAAGCTCGGGCGGCCGCCATGCCACAGCCGTCCCCGTAAACCCCCCACCCCTCCCCTCCCGGCGTGCTCAAGCTCCTCAGCCGGCACCACCGGAGTTGGGAAGGAGGCGCGGGGGCGCCGGAGTTGGGGGGGAGCAGGCGCGCGGGCGGCGGAGGTGGGTCCCCTTATCCTGCGCGGGGGAGCCCCAGACAACAGCAGAGAACACCGGAGCTGCGAGGAATGGTGGCGCGGCCGCCGGAGTTGGGGAAGAAGGCGCGCGGGCGGCGGGGTTTAAGCAGAGCCGCCGCCAGCCGCCAGAGAGAAGGTTTGAGTGTTTTCCATGGGCCTATTCT
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| CDS seq | ATGGCGGCCGCCCGAGCTTGCCCTATGGGAGTATCGGTCGACCAGCGGCGCGCGGCCGTTGCCGTGCTCCGCGCCGCCGCCGCCGCCGGCGAGCTTTCGTTAGGGAAGGCGGTTCACGCGAGGGTTGTCAGGGCCGCGCGCTTCGACGTCGTCCAGTACAACAACCTCATTGCCCTGTACGTCAAGTGCGGCCGCCTAGGCCTCGCCCGCCAGGTGTTCGACGCAATGCCCTCCCGGAACCCCGTGTCTGGGAACCTGCTCATGTCCGGGTACGCTTCTTCCGGGCGCCACAGGGACGCCCTCGCGCTCCTCAGGGTGGCTGACTTTGGTCTGAATGAGTACGTGCTGTCGTCGGCTGTGGCCGCGACTGCCCATGTCCGGAGCTATGATATGGGGAGGCAGTGCCATGGATATGCTATCAAGGCTGGACTAGCAGAGCACCCTTACGTTTGTAGTGCGGTGCTGCATATGTATTGCCAATGTGCACACATGGACGAAGCGGTGAAGGTATTTGATAATGTTTCCAGTTTTAATGTATTCGCGTTCAACTCAATGATAAATGGGTTTCTTGATCGGGGCCAGATGGATGGTTCCACCAGTATAGTAAGAAGCATGGTGAGAAATGTCGGGCAATGGGATCATGTGTCATATGTCGCAGTTCTTGGGCATTGTGCTAGCACGAAAGAGGTGGTGCTTGGGAGTCAGGTGCATACCCAAGCGTTGAAGAGGAGGCTTGAGCTGAATGTGTATGTGGGGAGTGCACTCGTTGATATGTATGGGAAATGTGACTTTCCCCATGAAGCTAATCGCGTGTTTGAGGTTTTGCCAGAAAAGAATATTGTTTCCTGGACAGCCATTATGACTGCTTATACACAAAATGAGCTGTTTGAAGATGCATTGCAGTTGTTCTTGGATATGGAAATGGAAGGAGTTCGGCCTAATGAGTTCACTTATGCTGTTGCTCTCAACAGTTGCGCTGGTCTTGCCACCTTGAAAAATGGTAATGCCCTTGGTGCATGTACTATGAAAACTGGGCATTGGGGCCTTTTGCCTGTCTGTAATGCCCTCATGAACATGTACTCAAAGAGTGGCAGTGTTGAGGATGCACGGAGAGTCTTCCTTTCTATGCCATGTCGTGATGTGGTTTCTTGGAATTCAATCATCATTGGCTACGCTCATCATGGCCGTGCAAGAGAAGCCATGGAAGCATTTCATGATATGTTGTTTGCAGAAGAAGTCCCATCTTATGTAACTTTCATTGGGGTGCTGTCAGCCTGTGCTCAGTTGGGTCTTGTAGATGAAGGGTTCTACTACCTGAATATTATGATGAAGGAAGTGGGAGTAAAACCTGGTAAGGAACATTACACTTGCATGGTCGGTTTGCTGTGCAGAGTTGGACGGCTTGACGAGGCAGAACGATTCATAGAAAGTAACTGCATTGGTACCGATGTTGTTGCATGGAGATCACTTCTAAGTTCTTGCCAAGTATATAGAAATTATGGTCTTGGTCATCGAGTAGCTGAACAGATTTTTCAGTTAAAGCCCAAAGATGTTGGAACCTATGTTTTGCTTTCTAATATGTATGCGAAAGCAAACCGGTGGGATGGTGTCGTGAAGGTTCGGAGGCTGATGAGAGAGTTGGGCGTTAGGAAGGAGCCTGGTGTTAGTTGGATTCAAGTGGGTAGTGAGGTCCATGTTTTCACATCTGAGGACAAAAAACACCCATATATGGAGCAGATCACCAAAAAACTCCAAGAGCTGATAGACAAGATAAAAGTGATTGGATATGTTCCAAACATTGCAGTGGCCCTACATGATGTTGAGGATGAACAAAAGGAAGAACATCTTATGTATCACAGTGAGAAATTAGCTCTTGCATTTGGCCTTATTCGCACCCCCAAGGGAGAAGCTATTCGTATAATGAAAAACGTCAGGATATGTGATGATTGCCATGTTGCCATCAAACTCATTTCACTTGCCACAGGCAGAAGAATAGTTGTAAGGGACACTGTTCGGTTTCATTGTATAGAAGATGGAGTCTGCTCATGTGATGACTATTGGTGA
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| Protein seq | MAAARACPMGVSVDQRRAAVAVLRAAAAAGELSLGKAVHARVVRAARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALALLRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW |
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| Function | Pentatricopeptide repeat-containing protein At5g39680 [UniProtKB/Swiss-Prot:Q9FK93] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g49740 | LOC_Os05g49740.1 | Chr05 | 28534151 | 28536925 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCCGCCCGAGCTTGCCCTATGGGAGTATCGGTCGACCAGCGGCGCGCGGCCGTTGCCGTGCTCCGCGCCGCCGCCGCCGCCGGCGAGCTTTCGTTAGGGAAGGCGGTTCACGCGAGGGTTGTCAGGGCCGCGCGCTTCGACGTCGTCCAGTACAACAACCTCATTGCCCTGTACGTCAAGTGCGGCCGCCTAGGCCTCGCCCGCCAGGTGTTCGACGCAATGCCCTCCCGGAACCCCGTGTCTGGGAACCTGCTCATGTCCGGGTACGCTTCTTCCGGGCGCCACAGGGACGCCCTCGCGCTCCTCAGGGTGGCTGACTTTGGTCTGAATGAGTACGTGCTGTCGTCGGCTGTGGCCGCGACTGCCCATGTCCGGAGCTATGATATGGGGAGGCAGTGCCATGGATATGCTATCAAGGCTGGACTAGCAGAGCACCCTTACGTTTGTAGTGCGGTGCTGCATATGTATTGCCAATGTGCACACATGGACGAAGCGGTGAAGGTATTTGATAATGTTTCCAGTTTTAATGTATTCGCGTTCAACTCAATGATAAATGGGTTTCTTGATCGGGGCCAGATGGATGGTTCCACCAGTATAGTAAGAAGCATGGTGAGAAATGTCGGGCAATGGGATCATGTGTCATATGTCGCAGTTCTTGGGCATTGTGCTAGCACGAAAGAGGTGGTGCTTGGGAGTCAGGTGCATACCCAAGCGTTGAAGAGGAGGCTTGAGCTGAATGTGTATGTGGGGAGTGCACTCGTTGATATGTATGGGAAATGTGACTTTCCCCATGAAGCTAATCGCGTGTTTGAGGTTTTGCCAGAAAAGAATATTGTTTCCTGGACAGCCATTATGACTGCTTATACACAAAATGAGCTGTTTGAAGATGCATTGCAGTTGTTCTTGGATATGGAAATGGAAGGAGTTCGGCCTAATGAGTTCACTTATGCTGTTGCTCTCAACAGTTGCGCTGGTCTTGCCACCTTGAAAAATGGTAATGCCCTTGGTGCATGTACTATGAAAACTGGGCATTGGGGCCTTTTGCCTGTCTGTAATGCCCTCATGAACATGTACTCAAAGAGTGGCAGTGTTGAGGATGCACGGAGAGTCTTCCTTTCTATGCCATGTCGTGATGTGGTTTCTTGGAATTCAATCATCATTGGCTACGCTCATCATGGCCGTGCAAGAGAAGCCATGGAAGCATTTCATGATATGTTGTTTGCAGAAGAAGTCCCATCTTATGTAACTTTCATTGGGGTGCTGTCAGCCTGTGCTCAGTTGGGTCTTGTAGATGAAGGGTTCTACTACCTGAATATTATGATGAAGGAAGTGGGAGTAAAACCTGGTAAGGAACATTACACTTGCATGGTCGGTTTGCTGTGCAGAGTTGGACGGCTTGACGAGGCAGAACGATTCATAGAAAGTAACTGCATTGGTACCGATGTTGTTGCATGGAGATCACTTCTAAGTTCTTGCCAAGTATATAGAAATTATGGTCTTGGTCATCGAGTAGCTGAACAGATTTTTCAGTTAAAGCCCAAAGATGTTGGAACCTATGTTTTGCTTTCTAATATGTATGCGAAAGCAAACCGGTGGGATGGTGTCGTGAAGGTTCGGAGGCTGATGAGAGAGTTGGGCGTTAGGAAGGAGCCTGGTGTTAGTTGGATTCAAGTGGGTAGTGAGGTCCATGTTTTCACATCTGAGGACAAAAAACACCCATATATGGAGCAGATCACCAAAAAACTCCAAGAGCTGATAGACAAGATAAAAGTGATTGGATATGTTCCAAACATTGCAGTGGCCCTACATGATGTTGAGGATGAACAAAAGGAAGAACATCTTATGTATCACAGTGAGAAATTAGCTCTTGCATTTGGCCTTATTCGCACCCCCAAGGGAGAAGCTATTCGTATAATGAAAAACGTCAGGATATGTGATGATTGCCATGTTGCCATCAAACTCATTTCACTTGCCACAGGCAGAAGAATAGTTGTAAGGGACACTGTTCGGTTTCATTGTATAGAAGATGGAGTCTGCTCATGTGATGACTATTGGTGA
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| Protein seq | MAAARACPMGVSVDQRRAAVAVLRAAAAAGELSLGKAVHARVVRAARFDVVQYNNLIALYVKCGRLGLARQVFDAMPSRNPVSGNLLMSGYASSGRHRDALALLRVADFGLNEYVLSSAVAATAHVRSYDMGRQCHGYAIKAGLAEHPYVCSAVLHMYCQCAHMDEAVKVFDNVSSFNVFAFNSMINGFLDRGQMDGSTSIVRSMVRNVGQWDHVSYVAVLGHCASTKEVVLGSQVHTQALKRRLELNVYVGSALVDMYGKCDFPHEANRVFEVLPEKNIVSWTAIMTAYTQNELFEDALQLFLDMEMEGVRPNEFTYAVALNSCAGLATLKNGNALGACTMKTGHWGLLPVCNALMNMYSKSGSVEDARRVFLSMPCRDVVSWNSIIIGYAHHGRAREAMEAFHDMLFAEEVPSYVTFIGVLSACAQLGLVDEGFYYLNIMMKEVGVKPGKEHYTCMVGLLCRVGRLDEAERFIESNCIGTDVVAWRSLLSSCQVYRNYGLGHRVAEQIFQLKPKDVGTYVLLSNMYAKANRWDGVVKVRRLMRELGVRKEPGVSWIQVGSEVHVFTSEDKKHPYMEQITKKLQELIDKIKVIGYVPNIAVALHDVEDEQKEEHLMYHSEKLALAFGLIRTPKGEAIRIMKNVRICDDCHVAIKLISLATGRRIVVRDTVRFHCIEDGVCSCDDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.178489 | 0.091026 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0572900 | RBH | 0.253284 | 0.122541 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g46230 | SBH | 0.183754 | 0.468554 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0572900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027720 | RBH | 0.112678 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0027510 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0027540 | RBH | 0.0 | 0.0 | 0.620171 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027580 | RBH | 0.042297 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0027490 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0445200 | RBH | 0.3980355 | 0.556401 | 0.2907035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027180 | RBH | 0.114395 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0457800 | RBH | 0.41206 | 0.7186855 | 2.0296815 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027320 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027210 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0027440 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0027450 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0027460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026980 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0027450 | RBH | 0.000000 | 4.305305 | 0.0 |
