Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g49140 | OGI:05076220 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:28188762-28194025 | ||||||||
| Gene Symbol | MPK7, OsMPK7, OsMAPK44, MAPK44, OsMAPK20-5, MAPK20-5 | ||||||||||
| DNA seq | ACATCAAATAAATTGCTCTTTCTATTGACTTTTGTTTGCTTGTTTAACTGGGCTGGAGGCTCAAATATCACTAGCATATTTTGCTTCCTCATTTCAACAAGATTAAACTTTGGATAGCTAGCATAACATTCTACCAAATAATCCGCCGTCTCAATTTTTTGGCGAATGATTCATTTTCGGAGTATGCTTTTGCAGGTTTACACAAGAAGCAACAGCTTCTAGCAAGAAAACAAGAAAAAAAAATCAAGGGTTGCAGGTATGTACACAAGCCCAGCCTAGTGCTGTTATTCACATTTTCTCCTTTTCTCCACAACAAATAAAGTGCGAGAAATTCCACCATGAACTTTCTCTCCCTCTTTTCCTCTTTCACCATCGCGAGCTCACTGCCATTTCAAATGGACAATGGCCGCCTGAGATGGAATAGGAGTTTCCCTTCTCCTTTCTTCAACCTTCGCCTGCATCCATGACCAGATGCGACCAATTCCCTTGCCAGCCTTATATCTGGGTGGATGGGCACAACACAAAGCCATGCTCCGGCATTCCCATCTTGCTCATCTATGGAGCAATTCCACAACTGCCTGACTAAAACTCTAGTACATCCTTGAAACACCATATTGAACGGCACCAACCTTGCTGTATCCACCAGCAACTGCTGCGATGCCGTTGAACGGAGCAATGCCGTATAGCATGCTCCCCTGGAGTGCAGCCCTGTCTGTTAGATCAGTTCTGGGAGCACTCCTCGTAAAGTAGTATTGTGAAGACCGTATGTCCGGGGCTGTATCTGGAGCAACTTTAGCATCCATCAAGTGTTGTGCAGGCCTGTACTGCACACGATCTTTCTCAAGCTCTTCCTGATGTTGCCTATCAGAGTAGTCTGACTTTAGGTTGTAGCTGTATCCTGACTTGTTGGCAGCTGCTGGAGGAACCATCGGATTCCTCACCACCCTCCGTGCGCTGTGCGGATCTGCGGCGCCTGGATTCTCGAATGGTAATACCGGACCAACCGTTCTTCCTGGTCTAGCTGTGAGTGACAAAGATGAAATATATGAGATCAATGCTCTTTGAATTCAAAATTAAAATGTACACTGGATTAAGTCACAAATGGTAAAGATAAACAGATACCTGTTGGGATCCTTTGAGTAACTTGGGATGTTGCATCTAGGCCTTCATTTGGAGGAATTGATGTAGAGTGAACTGTTGTAGCCCTGCAAAGAGCCGATCAAAGGTCAGCTGCAAAGTTCAAGCACAATATCTAGGATCTGACAGCCAAGATAACCCAATACTAATGGTAAAACATTTTTTCTTCCCTTGTGTATTAATTTTAACAGATGCAATAGATGGCAGCACAAATCACTGAATTGGCAATTATGATCACATTGGAAAGAACTGTAACGATGTAAGTTACCTTGGAAGAGAAACATGCTTCCTATCTAGTGCACCACTCTTTCCTCCGTTTTCCTCTAAGATGGCAAATTGCCTCCGGAAATTATCAACAGCACTACATAACAAAAATAAAGGTTGTGAATATAACCATATAAACAGGGAAATAATTTATAAGATGTGTCAAGATAAAAACCTTGGATATAGAAAGCTCGTGTTTTCGGAGCCATTCATGTAATCCTTCAGAAGCTGAGGATGATACTCTAATATCTCACGGAATATAAGTTCCTTGATATCATCTTTGGTAACCTTTCTTCGCTCAAACTCAAACTCCATTTTTGAAATTGGTTGGCATGATGGTTCTCTCTCCACTTTTGCAAGGCCTTTAAAATATGGATCAGCCAACGCCTGATTATACACAAAATAGATTGTTAGAATAACATCTAAAGTAGGCATATATAACTATGTTTAGTAGCACAGATGACAATGCAAAACAGTAGCATGAAAACTAATCTAATTCAAGTAGAGCTTGCATGCCTCTTCTGCAGTAGGTCGATCCTTCGGATCAAATGCTAGAAGCCTTTGTAAGAGCTTGAGTGCCAAAGGATCTACATTTGGGAACTTTTCTGAAAAAGGTACTGGCTGCTTCCTCCTCATGCTGCTCAGATACCTCCTTGCCTTGTCATTCCGAATCTGAAGCAGTCAAAACATGGAAAAATCAGACCTGGAATAATTTGTGCTGGAGAATTAAACATGTCAATGTTTCTGATAATAATAATAAGTCATACCCTTGAAATAGCATCCATTGATGGTGTACCCAAGAGATCAGTCATCAAGTCCAATTGATGAACCACATTTTTACCAGGGAACAAAGGTTTTCCAGTCAAAATCTCCGCAAAAATGCAACCAATACTCCATGTATCTATAGCTGGTGAATACTGCAGAAAAGAATCAATTTAGTATCACCAACTTAGCATAGGAATGGAGGTAAAAATGAAGGTAGGGATAACAAAAAACAACTACAGCAGATTTTACAGGAGTACCTGCAACATTAAGCAGTGTATTTTGGCTTGTCAAAAATATGTTCCTGAACAAGCAGCCTGCTATTAATATGCTGCTACACTACTCTAAAACTAACTGACATATAATAACCAAAGAAGGACACTGACCTACGCACCAACCATGTAGAATCTCAGTCCTTAATTTTATTGCTCTTTATGTGTATGTGTGTGGCATCTCAAGGTCAATTTCAATAGATAAGAAGAAGAAATTGGAACATGTTGCTAAAATTTCTTATGCTGTAGAGCCCTATGAAAATGAAGAGCACACGAAATAATACTCTGATAAAGCAACCCACAGGTTGGGAAATTTGATTATACCTTAGAAAAGAAAGACCCACACAGCTCAGGAGCCCTGTACCATCTAGTTGCAACGTAGTCCTGTTGCATGGTGAAGCAGACAGTGAGACTTATGTTGCATGACAAATTCTTTGGTATGGAACACGACATGGCATCTAGTTTTCCATAGAGAACTTAGTGTTGAAAATAACATACCGTCCAGAAAACTGTTGTAGGAGTGTCATTAAATGCAACTCTTGCTAGTCCAAAATCACATATCTTGAGCTTACAGTTAGCATTTGCTAATATATTTTTGGGCTTTAAATCACGATGATAAACATTAGCTGCACCCACAAAGACTTCTCATCAGAACATAGATAAATACTCAATGCTCAATTGAGATATAATAAATTTAGTTACTGCAGCTAGCAGATCCAAAGACAGAATTTGAACAGGATTCATACAACAGAAGACTTTCTGAACTGAACACGACTTGATAGCTATTGAATTGAGAGCACATTTTTGGCAATTGGCACTTATGTCAAAGAAATTTCAATACAAAGAGAAGAGCTCTATATAATCTGAACCTCACAGCTATCTTGGGAAATCAATAGAATCATGGTTAACACCATACAGACAAGACAGAAGAAATGGCACTAGGAAAATTTCGACTGCTACTTCAAGAATGCACAGGACAATAAGACTAAGACTATCGCATTGCTTAATAGAAAACTGTAACTTTTTGTGCAAATGCACTACTTAGAATTGCTCATAATCCTAACTCAGAGAAGCTCCAATGTGATACCATGATAGAAGAACTTTCAGAGGGTAGGTAAGATTTCATAATATGCTTACCAGTATGGATATATTTCAATGCTCGAAGCATTTGATACAGAAAGAACTGATGATGTTCCTTCGTTAAGTCATCATTAGCCTTAATAACCTGGTGGAGGTCTGTATCCATCAGTTCGAAGACAACATAAATATCTTTGAAGTCCCTTCTAGATGGAGGTAACATTATATGTTTGATCTCGACAATATCAGGATGCCGTAAAAGCCGGAGAAGTTTGATCTCACGGAGGATCCTAGCAGCATCAGATAGATGCTCAAAGATATTGTGTATTTTCTTGATTGCTACTTTGTCACCGGTATGTTGGTCAATAGCTGAACAAACAACTCCATAACTTCCTTTACCAACGATTTCTTGAATTTTGTATCGGCTGGAGTCACCATATTCACTGAAGAAATCCATCTCTGTTGTGTTCTGGACAAAATTCAAGATTGAAAATTCAGCACTCTGTCTCAAAACACAATGGCATCCAAGAACAATTACATAATTTAGGCAATGGCATGTGAATTGGAACAAAGCACAAATTCACTGAGTTACATCTTCCCCAAGAGCTAAGCAGCTGCAACACAACTAATCACAAAACCAAGGGTTTCGCATTATCGGGATACTAAGAAGCTTTGCCAAAAAAAAAAAGTTAACCAATTACATACAGCTTGCAATTGAACTCCTAATAATACTCCTTGCACCAAAGACATCACAACCAAAAAGGCAAAAACAAAAACCAATGAAACAGTAACCTTTGCCTAGTCTATGCTCGACGACTGGAAACCACAGACTGAAGGTCTGCAACAAGTAATTCACAGAACCGGATTACAGAAACATACAGATACACTGCAGCCTGACCAAACAAAAACTGACCTGACCTCTACTCCCGGCTCCCGCTGTGGTGAACTAATGATCGCCCTAATTCTTGACAAGTCTAATGATCAGTCTGGAAAAGATACACCTTTGGCTCAAACCTATAAGTAAAAATATACCTCCTTTTTTTTAAGTGGGCAAAGATATCTACAGTGCTATATCCCGGAAAGAAAATACAGCTTGCTTGGATTAGGATAAACTTACCCATTACCCCAAGATTTTGAACCAAACAAGAATTACCGTGTTATTACGGGCTAATAGTAGCGTTTATACAAGTCAATCAGCCTTGTAGTAGGAGACTACGTTTTAAGGAAAGAGATAAATGGCTTCTTGCAGATGCACAGGAAAGATTTCAGGAAACGCTCGCAAAGCTCAGGTAGGATAGGATATGATAGGATAGGATCTTCCTACAAGGCAAGAATCCGCTCCAAATCCGGGAGCAATTTCCTGACGCCGTTTACGCTCACGCGCAGGAGCAGGACACCAAACTTCTTCGGATCAGAACCCACAATCCCCCAAAAAAAACAAAAAAAAACACCAATTCGTCCAGCCTATCCAAGTTCAGATGAACACGGCGACGAACCCCAAGAACCCAGAGAAACAAAACGAAGCAGCAGCGAAATCTTTAGTGTTCTCCCACGGCCACCACCCACCTTGCTCCGCTGCTCCGCCGCCGGCGCCGCCCGCCCACCCGCATTTGCCTCAGGCATCGCGAGACGGCCGCCGGGGAGATCTCGCCGGGAGAAAATCCAAGCCTCGCCGCTCGAATCCGCAGCGATGTGGAGGATGAGGAGAAGGAGAAGAAGAAGCAGCCGAGCCGAGTAGTGTAGCGGTGCGGT
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| CDS seq | ATGCCTGAGGCAAATGCGGGTGGGCGGGCGGCGCCGGCGGCGGAGCAGCGGAGCAAGAACACAACAGAGATGGATTTCTTCAGTGAATATGGTGACTCCAGCCGATACAAAATTCAAGAAATCGTTGGTAAAGGAAGTTATGGAGTTGTTTGTTCAGCTATTGACCAACATACCGGTGACAAAGTAGCAATCAAGAAAATACACAATATCTTTGAGCATCTATCTGATGCTGCTAGGATCCTCCGTGAGATCAAACTTCTCCGGCTTTTACGGCATCCTGATATTGTCGAGATCAAACATATAATGTTACCTCCATCTAGAAGGGACTTCAAAGATATTTATGTTGTCTTCGAACTGATGGATACAGACCTCCACCAGGTTATTAAGGCTAATGATGACTTAACGAAGGAACATCATCAGTTCTTTCTGTATCAAATGCTTCGAGCATTGAAATATATCCATACTGCTAATGTTTATCATCGTGATTTAAAGCCCAAAAATATATTAGCAAATGCTAACTGTAAGCTCAAGATATGTGATTTTGGACTAGCAAGAGTTGCATTTAATGACACTCCTACAACAGTTTTCTGGACGGACTACGTTGCAACTAGATGGTACAGGGCTCCTGAGCTGTGTGGGTCTTTCTTTTCTAAGTATTCACCAGCTATAGATACATGGAGTATTGGTTGCATTTTTGCGGAGATTTTGACTGGAAAACCTTTGTTCCCTGGTAAAAATGTGGTTCATCAATTGGACTTGATGACTGATCTCTTGGGTACACCATCAATGGATGCTATTTCAAGGATTCGGAATGACAAGGCAAGGAGGTATCTGAGCAGCATGAGGAGGAAGCAGCCAGTACCTTTTTCAGAAAAGTTCCCAAATGTAGATCCTTTGGCACTCAAGCTCTTACAAAGGCTTCTAGCATTTGATCCGAAGGATCGACCTACTGCAGAAGAGGCGTTGGCTGATCCATATTTTAAAGGCCTTGCAAAAGTGGAGAGAGAACCATCATGCCAACCAATTTCAAAAATGGAGTTTGAGTTTGAGCGAAGAAAGGTTACCAAAGATGATATCAAGGAACTTATATTCCGTGAGATATTAGAGTATCATCCTCAGCTTCTGAAGGATTACATGAATGGCTCCGAAAACACGAGCTTTCTATATCCAAGTGCTGTTGATAATTTCCGGAGGCAATTTGCCATCTTAGAGGAAAACGGAGGAAAGAGTGGTGCACTAGATAGGAAGCATGTTTCTCTTCCAAGGGCTACAACAGTTCACTCTACATCAATTCCTCCAAATGAAGGCCTAGATGCAACATCCCAAGTTACTCAAAGGATCCCAACAGCTAGACCAGGAAGAACGGTTGGTCCGGTATTACCATTCGAGAATCCAGGCGCCGCAGATCCGCACAGCGCACGGAGGGTGGTGAGGAATCCGATGGTTCCTCCAGCAGCTGCCAACAAGTCAGGATACAGCTACAACCTAAAGTCAGACTACTCTGATAGGCAACATCAGGAAGAGCTTGAGAAAGATCGTGTGCAGTACAGGCCTGCACAACACTTGATGGATGCTAAAGTTGCTCCAGATACAGCCCCGGACATACGGTCTTCACAATACTACTTTACGAGGAGTGCTCCCAGAACTGATCTAACAGACAGGGCTGCACTCCAGGGGAGCATGCTATACGGCATTGCTCCGTTCAACGGCATCGCAGCAGTTGCTGGTGGATACAGCAAGGTTGGTGCCGTTCAATATGGTGTTTCAAGGATGTACTAG
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| Protein seq | MPEANAGGRAAPAAEQRSKNTTEMDFFSEYGDSSRYKIQEIVGKGSYGVVCSAIDQHTGDKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYVATRWYRAPELCGSFFSKYSPAIDTWSIGCIFAEILTGKPLFPGKNVVHQLDLMTDLLGTPSMDAISRIRNDKARRYLSSMRRKQPVPFSEKFPNVDPLALKLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKMEFEFERRKVTKDDIKELIFREILEYHPQLLKDYMNGSENTSFLYPSAVDNFRRQFAILEENGGKSGALDRKHVSLPRATTVHSTSIPPNEGLDATSQVTQRIPTARPGRTVGPVLPFENPGAADPHSARRVVRNPMVPPAAANKSGYSYNLKSDYSDRQHQEELEKDRVQYRPAQHLMDAKVAPDTAPDIRSSQYYFTRSAPRTDLTDRAALQGSMLYGIAPFNGIAAVAGGYSKVGAVQYGVSRMY |
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| Function | Mitogen-activated protein kinase 7 [UniProtKB/Swiss-Prot:Q67C40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g49140 | LOC_Os05g49140.1 | Chr05 | 28188762 | 28194025 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCTGAGGCAAATGCGGGTGGGCGGGCGGCGCCGGCGGCGGAGCAGCGGAGCAAGAACACAACAGAGATGGATTTCTTCAGTGAATATGGTGACTCCAGCCGATACAAAATTCAAGAAATCGTTGGTAAAGGAAGTTATGGAGTTGTTTGTTCAGCTATTGACCAACATACCGGTGACAAAGTAGCAATCAAGAAAATACACAATATCTTTGAGCATCTATCTGATGCTGCTAGGATCCTCCGTGAGATCAAACTTCTCCGGCTTTTACGGCATCCTGATATTGTCGAGATCAAACATATAATGTTACCTCCATCTAGAAGGGACTTCAAAGATATTTATGTTGTCTTCGAACTGATGGATACAGACCTCCACCAGGTTATTAAGGCTAATGATGACTTAACGAAGGAACATCATCAGTTCTTTCTGTATCAAATGCTTCGAGCATTGAAATATATCCATACTGCTAATGTTTATCATCGTGATTTAAAGCCCAAAAATATATTAGCAAATGCTAACTGTAAGCTCAAGATATGTGATTTTGGACTAGCAAGAGTTGCATTTAATGACACTCCTACAACAGTTTTCTGGACGGACTACGTTGCAACTAGATGGTACAGGGCTCCTGAGCTGTGTGGGTCTTTCTTTTCTAAGTATTCACCAGCTATAGATACATGGAGTATTGGTTGCATTTTTGCGGAGATTTTGACTGGAAAACCTTTGTTCCCTGGTAAAAATGTGGTTCATCAATTGGACTTGATGACTGATCTCTTGGGTACACCATCAATGGATGCTATTTCAAGGATTCGGAATGACAAGGCAAGGAGGTATCTGAGCAGCATGAGGAGGAAGCAGCCAGTACCTTTTTCAGAAAAGTTCCCAAATGTAGATCCTTTGGCACTCAAGCTCTTACAAAGGCTTCTAGCATTTGATCCGAAGGATCGACCTACTGCAGAAGAGGCGTTGGCTGATCCATATTTTAAAGGCCTTGCAAAAGTGGAGAGAGAACCATCATGCCAACCAATTTCAAAAATGGAGTTTGAGTTTGAGCGAAGAAAGGTTACCAAAGATGATATCAAGGAACTTATATTCCGTGAGATATTAGAGTATCATCCTCAGCTTCTGAAGGATTACATGAATGGCTCCGAAAACACGAGCTTTCTATATCCAAGTGCTGTTGATAATTTCCGGAGGCAATTTGCCATCTTAGAGGAAAACGGAGGAAAGAGTGGTGCACTAGATAGGAAGCATGTTTCTCTTCCAAGGGCTACAACAGTTCACTCTACATCAATTCCTCCAAATGAAGGCCTAGATGCAACATCCCAAGTTACTCAAAGGATCCCAACAGCTAGACCAGGAAGAACGGTTGGTCCGGTATTACCATTCGAGAATCCAGGCGCCGCAGATCCGCACAGCGCACGGAGGGTGGTGAGGAATCCGATGGTTCCTCCAGCAGCTGCCAACAAGTCAGGATACAGCTACAACCTAAAGTCAGACTACTCTGATAGGCAACATCAGGAAGAGCTTGAGAAAGATCGTGTGCAGTACAGGCCTGCACAACACTTGATGGATGCTAAAGTTGCTCCAGATACAGCCCCGGACATACGGTCTTCACAATACTACTTTACGAGGAGTGCTCCCAGAACTGATCTAACAGACAGGGCTGCACTCCAGGGGAGCATGCTATACGGCATTGCTCCGTTCAACGGCATCGCAGCAGTTGCTGGTGGATACAGCAAGGTTGGTGCCGTTCAATATGGTGTTTCAAGGATGTACTAG
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| Protein seq | MPEANAGGRAAPAAEQRSKNTTEMDFFSEYGDSSRYKIQEIVGKGSYGVVCSAIDQHTGDKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYVATRWYRAPELCGSFFSKYSPAIDTWSIGCIFAEILTGKPLFPGKNVVHQLDLMTDLLGTPSMDAISRIRNDKARRYLSSMRRKQPVPFSEKFPNVDPLALKLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKMEFEFERRKVTKDDIKELIFREILEYHPQLLKDYMNGSENTSFLYPSAVDNFRRQFAILEENGGKSGALDRKHVSLPRATTVHSTSIPPNEGLDATSQVTQRIPTARPGRTVGPVLPFENPGAADPHSARRVVRNPMVPPAAANKSGYSYNLKSDYSDRQHQEELEKDRVQYRPAQHLMDAKVAPDTAPDIRSSQYYFTRSAPRTDLTDRAALQGSMLYGIAPFNGIAAVAGGYSKVGAVQYGVSRMY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g49140 | LOC_Os05g49140.2 | Chr05 | 28188762 | 28192807 | - | MSU_osa1r7 | ||
| CDS seq | ATGGATTTCTTCAGTGAATATGGTGACTCCAGCCGATACAAAATTCAAGAAATCGTTGGTAAAGGAAGTTATGGAGTTGTTTGTTCAGCTATTGACCAACATACCGGTGACAAAGTAGCAATCAAGAAAATACACAATATCTTTGAGCATCTATCTGATGCTGCTAGGATCCTCCGTGAGATCAAACTTCTCCGGCTTTTACGGCATCCTGATATTGTCGAGATCAAACATATAATGTTACCTCCATCTAGAAGGGACTTCAAAGATATTTATGTTGTCTTCGAACTGATGGATACAGACCTCCACCAGGTTATTAAGGCTAATGATGACTTAACGAAGGAACATCATCAGTTCTTTCTGTATCAAATGCTTCGAGCATTGAAATATATCCATACTGCTAATGTTTATCATCGTGATTTAAAGCCCAAAAATATATTAGCAAATGCTAACTGTAAGCTCAAGATATGTGATTTTGGACTAGCAAGAGTTGCATTTAATGACACTCCTACAACAGTTTTCTGGACGGACTACGTTGCAACTAGATGGTACAGGGCTCCTGAGCTGTGTGGGTCTTTCTTTTCTAAGTATTCACCAGCTATAGATACATGGAGTATTGGTTGCATTTTTGCGGAGATTTTGACTGGAAAACCTTTGTTCCCTGGTAAAAATGTGGTTCATCAATTGGACTTGATGACTGATCTCTTGGGTACACCATCAATGGATGCTATTTCAAGGATTCGGAATGACAAGGCAAGGAGGTATCTGAGCAGCATGAGGAGGAAGCAGCCAGTACCTTTTTCAGAAAAGTTCCCAAATGTAGATCCTTTGGCACTCAAGCTCTTACAAAGGCTTCTAGCATTTGATCCGAAGGATCGACCTACTGCAGAAGAGGCGTTGGCTGATCCATATTTTAAAGGCCTTGCAAAAGTGGAGAGAGAACCATCATGCCAACCAATTTCAAAAATGGAGTTTGAGTTTGAGCGAAGAAAGGTTACCAAAGATGATATCAAGGAACTTATATTCCGTGAGATATTAGAGTATCATCCTCAGCTTCTGAAGGATTACATGAATGGCTCCGAAAACACGAGCTTTCTATATCCAAGTGCTGTTGATAATTTCCGGAGGCAATTTGCCATCTTAGAGGAAAACGGAGGAAAGAGTGGTGCACTAGATAGGAAGCATGTTTCTCTTCCAAGGGCTACAACAGTTCACTCTACATCAATTCCTCCAAATGAAGGCCTAGATGCAACATCCCAAGTTACTCAAAGGATCCCAACAGCTAGACCAGGAAGAACGGTTGGTCCGGTATTACCATTCGAGAATCCAGGCGCCGCAGATCCGCACAGCGCACGGAGGGTGGTGAGGAATCCGATGGTTCCTCCAGCAGCTGCCAACAAGTCAGGATACAGCTACAACCTAAAGTCAGACTACTCTGATAGGCAACATCAGGAAGAGCTTGAGAAAGATCGTGTGCAGTACAGGCCTGCACAACACTTGATGGATGCTAAAGTTGCTCCAGATACAGCCCCGGACATACGGTCTTCACAATACTACTTTACGAGGAGTGCTCCCAGAACTGATCTAACAGACAGGGCTGCACTCCAGGGGAGCATGCTATACGGCATTGCTCCGTTCAACGGCATCGCAGCAGTTGCTGGTGGATACAGCAAGGTTGGTGCCGTTCAATATGGTGTTTCAAGGATGTACTAG
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| Protein seq | MDFFSEYGDSSRYKIQEIVGKGSYGVVCSAIDQHTGDKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYVATRWYRAPELCGSFFSKYSPAIDTWSIGCIFAEILTGKPLFPGKNVVHQLDLMTDLLGTPSMDAISRIRNDKARRYLSSMRRKQPVPFSEKFPNVDPLALKLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKMEFEFERRKVTKDDIKELIFREILEYHPQLLKDYMNGSENTSFLYPSAVDNFRRQFAILEENGGKSGALDRKHVSLPRATTVHSTSIPPNEGLDATSQVTQRIPTARPGRTVGPVLPFENPGAADPHSARRVVRNPMVPPAAANKSGYSYNLKSDYSDRQHQEELEKDRVQYRPAQHLMDAKVAPDTAPDIRSSQYYFTRSAPRTDLTDRAALQGSMLYGIAPFNGIAAVAGGYSKVGAVQYGVSRMY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g49140 | LOC_Os05g49140.3 | Chr05 | 28188762 | 28194022 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCTGAGGCAAATGCGGGTGGGCGGGCGGCGCCGGCGGCGGAGCAGCGGAGCAAGAACACAACAGAGATGGATTTCTTCAGTGAATATGGTGACTCCAGCCGATACAAAATTCAAGAAATCGTTGGTAAAGGAAGTTATGGAGTTGTTTGTTCAGCTATTGACCAACATACCGGTGACAAAGTAGCAATCAAGAAAATACACAATATCTTTGAGCATCTATCTGATGCTGCTAGGATCCTCCGTGAGATCAAACTTCTCCGGCTTTTACGGCATCCTGATATTGTCGAGATCAAACATATAATGTTACCTCCATCTAGAAGGGACTTCAAAGATATTTATGTTGTCTTCGAACTGATGGATACAGACCTCCACCAGGTTATTAAGGCTAATGATGACTTAACGAAGGAACATCATCAGTTCTTTCTGTATCAAATGCTTCGAGCATTGAAATATATCCATACTGCTAATGTTTATCATCGTGATTTAAAGCCCAAAAATATATTAGCAAATGCTAACTGTAAGCTCAAGATATGTGATTTTGGACTAGCAAGAGTTGCATTTAATGACACTCCTACAACAGTTTTCTGGACGGACTACGTTGCAACTAGATGGTACAGGGCTCCTGAGCTGTGTGGGTCTTTCTTTTCTAAGTATTCACCAGCTATAGATACATGGAGTATTGGTTGCATTTTTGCGGAGATTTTGACTGGAAAACCTTTGTTCCCTGGTAAAAATGTGGTTCATCAATTGGACTTGATGACTGATCTCTTGGGTACACCATCAATGGATGCTATTTCAAGGATTCGGAATGACAAGGCAAGGAGGTATCTGAGCAGCATGAGGAGGAAGCAGCCAGTACCTTTTTCAGAAAAGTTCCCAAATGTAGATCCTTTGGCACTCAAGCTCTTACAAAGGCTTCTAGCATTTGATCCGAAGGATCGACCTACTGCAGAAGAGGCGTTGGCTGATCCATATTTTAAAGGCCTTGCAAAAGTGGAGAGAGAACCATCATGCCAACCAATTTCAAAAATGGAGTTTGAGTTTGAGCGAAGAAAGGTTACCAAAGATGATATCAAGGAACTTATATTCCGTGAGATATTAGAGTATCATCCTCAGCTTCTGAAGGATTACATGAATGGCTCCGAAAACACGAGCTTTCTATATCCAAGTGCTGTTGATAATTTCCGGAGGCAATTTGCCATCTTAGAGGAAAACGGAGGAAAGAGTGGTGCACTAGATAGGAAGCATGTTTCTCTTCCAAGGGCTACAACAGTTCACTCTACATCAATTCCTCCAAATGAAGGCCTAGATGCAACATCCCAAGTTACTCAAAGGATCCCAACAGGTATCTGTTTATCTTTACCATTTGTGACTTAA
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| Protein seq | MPEANAGGRAAPAAEQRSKNTTEMDFFSEYGDSSRYKIQEIVGKGSYGVVCSAIDQHTGDKVAIKKIHNIFEHLSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMDTDLHQVIKANDDLTKEHHQFFLYQMLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFNDTPTTVFWTDYVATRWYRAPELCGSFFSKYSPAIDTWSIGCIFAEILTGKPLFPGKNVVHQLDLMTDLLGTPSMDAISRIRNDKARRYLSSMRRKQPVPFSEKFPNVDPLALKLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKMEFEFERRKVTKDDIKELIFREILEYHPQLLKDYMNGSENTSFLYPSAVDNFRRQFAILEENGGKSGALDRKHVSLPRATTVHSTSIPPNEGLDATSQVTQRIPTGICLSLPFVT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.698292 | 3.596164 | 2.309098 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0566400 | RBH | 4.685328 | 5.743689 | 9.244315 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47530 | RBH | 1.335844 | 2.281712 | 2.173960 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0566400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0027180 | RBH | 0.571236 | 96.461525 | 12.640198 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026970 | RBH | 1.630057 | 14.906492 | 4.327871 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0026960 | RBH | 1.083918 | 121.271744 | 13.996270 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0027020 | RBH | 0.259731 | 2.100509 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0026950 | RBH | 15.937569 | 51.792625 | 27.933529 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0439000 | RBH | 24.2954025 | 58.6445255 | 6.4893275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0026610 | RBH | 0.381892 | 3.671085 | 2.416938 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0451000 | RBH | 26.018341 | 11.796009 | 12.364258 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0026790 | RBH | 1.709866 | 0.790488 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0026660 | RBH | 2.902050 | 28.857269 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0026860 | RBH | 21.903416 | 50.224880 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0026910 | RBH | 1.975538 | 4.418539 | 3.058074 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0026920 | RBH | 0.933140 | 38.646500 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G026390 | RBH | 0.531842 | 9.955582 | 5.473310 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0026920 | RBH | 1.694276 | 51.376976 | 17.862587 |
