Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g48010 | OGI:05074420 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:27524786-27526242 | ||||||||
| Gene Symbol | PL, OsMYB55, OsMYB-2, MYB55, MYB-2, OsPL | ||||||||||
| DNA seq | GCTGGAGAATTTGGATCAGTGCAGATACATCTATGGATTAATTTACATGTAATAATCGATCACTCATAATACACGAGAAAACGCCAGCTAGAGAATGGGCCACTCGAAGAAGAGAAAAAAATTGAAAAAAAAAAGAGAGCAAGAATTATGCTAGTAGCAAGTGGCGACGCATCGATCGATCGCCGTTGCGTTCGCAGCTACGCAAGAATTCAATGGAGGTTTTAGCGTGTCCTCCTATGTCAGGGTGTTGCAGAGACCCTGTGGCTTGGCGTAGGCGTGGTCGGAGGCCGCCCACATCTCCGCCATGTTCGGGAAGTAGCACGCCGAGAGCTCCAAGGTGGCCTTGCTGTCCGGCGCCGCGCCGGCGAAGCCGCTGAACAGCTCGGCGTAAGGGAACAGCGGCTCGCCGGCCGTGAGCTCGCCGAGGAACACGTCGTCGAGGGACAAGGCGTCGGACGCCCAGCCGCCGTCGCCGTCCGCCGTGACGGTGGCCGGTGGTGGCACGGGCGCGAGGTCGGTCGGGGATGCCGCCGCCGCCGCCGCGGGTGGTGCGTCGAAGCGGATGAACTGCTGCTGCGGCGGCGTCGTCGGTGGCGGGTACATGGTGGTGGTGGTGGTGGCGGCGGCGGCGAAGCAGGCGTCGCCGCTCGAGCTGGTGACGGACGAGGAGGCCGGCGAGAGCGCCGGCGCCATCGCTGACGACGTGCATTGGCTCGGCGCCGAGGCGGCGGCGCGCGGCTGCACGGCGCCCATGGCTTTCTTCTTGAGCTTGGTGTTCCAGTAGTTCTTGACGTCGTTGTCAGTCCGGCCGGGGAGCTTCGACGCGATGATGGACCACCTGGCAACGCACGCAAACAGAGTCAGTTCAAGAACTCAGAACAGGATCAGTGAAAGAAAAAAGAAATATTCATCTCCGGCTTAAATCATCACCTGCTTCCAATCGAGTTGTAGAGCGAGCAGATGATGTGGTCCTCCTGCTCGGTGTAGCCGCCGTGCTTGATGTCCGGCCTCAGGTAGTTGAGCCACCGGAGCCTGCAGCTCTTGCCGCAGCGGTTGAGCCCTGAATCACACAAGAGAACACGCAGACATCAGAATTCACATACAAACATGGCGTTTCATCACCGGCTAGCATCGACGACGACGAGCAGTGCACTAATACCGACCTGCTTTCTGCGGGAGCGCGATCCAGTTGCCGCCGATGCCGTGGCTCTGGACGTAGCTCCGCAGCTGCTCGTCCTCCTCCGGCGACCACGGCCCCCGCTTCACGCTCGCCTTGTCGCAGCACGGCGCGCGCCCCATTTTTTTTGCACAATCCTCCTCACCACCCGCGGCCTCCCTCGCAGTCGCAGCAACCAACCAAGCGATCGATCGATCGATCTCGAGCAGAAGACGATATGCGCGTCACCGGCTCGTGTCTACTCCAAGCACAGGGACGGCAGCGACCGAGACCGACCGAT
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| CDS seq | ATGGGGCGCGCGCCGTGCTGCGACAAGGCGAGCGTGAAGCGGGGGCCGTGGTCGCCGGAGGAGGACGAGCAGCTGCGGAGCTACGTCCAGAGCCACGGCATCGGCGGCAACTGGATCGCGCTCCCGCAGAAAGCAGGGCTCAACCGCTGCGGCAAGAGCTGCAGGCTCCGGTGGCTCAACTACCTGAGGCCGGACATCAAGCACGGCGGCTACACCGAGCAGGAGGACCACATCATCTGCTCGCTCTACAACTCGATTGGAAGCAGGTGGTCCATCATCGCGTCGAAGCTCCCCGGCCGGACTGACAACGACGTCAAGAACTACTGGAACACCAAGCTCAAGAAGAAAGCCATGGGCGCCGTGCAGCCGCGCGCCGCCGCCTCGGCGCCGAGCCAATGCACGTCGTCAGCGATGGCGCCGGCGCTCTCGCCGGCCTCCTCGTCCGTCACCAGCTCGAGCGGCGACGCCTGCTTCGCCGCCGCCGCCACCACCACCACCACCATGTACCCGCCACCGACGACGCCGCCGCAGCAGCAGTTCATCCGCTTCGACGCACCACCCGCGGCGGCGGCGGCGGCATCCCCGACCGACCTCGCGCCCGTGCCACCACCGGCCACCGTCACGGCGGACGGCGACGGCGGCTGGGCGTCCGACGCCTTGTCCCTCGACGACGTGTTCCTCGGCGAGCTCACGGCCGGCGAGCCGCTGTTCCCTTACGCCGAGCTGTTCAGCGGCTTCGCCGGCGCGGCGCCGGACAGCAAGGCCACCTTGGAGCTCTCGGCGTGCTACTTCCCGAACATGGCGGAGATGTGGGCGGCCTCCGACCACGCCTACGCCAAGCCACAGGGTCTCTGCAACACCCTGACATAG
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| Protein seq | MGRAPCCDKASVKRGPWSPEEDEQLRSYVQSHGIGGNWIALPQKAGLNRCGKSCRLRWLNYLRPDIKHGGYTEQEDHIICSLYNSIGSRWSIIASKLPGRTDNDVKNYWNTKLKKKAMGAVQPRAAASAPSQCTSSAMAPALSPASSSVTSSSGDACFAAAATTTTTMYPPPTTPPQQQFIRFDAPPAAAAAASPTDLAPVPPPATVTADGDGGWASDALSLDDVFLGELTAGEPLFPYAELFSGFAGAAPDSKATLELSACYFPNMAEMWAASDHAYAKPQGLCNTLT |
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| Function | Transcription factor MYB36 [UniProtKB/Swiss-Prot:Q9FKL2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g48010 | LOC_Os05g48010.1 | Chr05 | 27524786 | 27526242 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGGCGCGCGCCGTGCTGCGACAAGGCGAGCGTGAAGCGGGGGCCGTGGTCGCCGGAGGAGGACGAGCAGCTGCGGAGCTACGTCCAGAGCCACGGCATCGGCGGCAACTGGATCGCGCTCCCGCAGAAAGCAGGGCTCAACCGCTGCGGCAAGAGCTGCAGGCTCCGGTGGCTCAACTACCTGAGGCCGGACATCAAGCACGGCGGCTACACCGAGCAGGAGGACCACATCATCTGCTCGCTCTACAACTCGATTGGAAGCAGGTGGTCCATCATCGCGTCGAAGCTCCCCGGCCGGACTGACAACGACGTCAAGAACTACTGGAACACCAAGCTCAAGAAGAAAGCCATGGGCGCCGTGCAGCCGCGCGCCGCCGCCTCGGCGCCGAGCCAATGCACGTCGTCAGCGATGGCGCCGGCGCTCTCGCCGGCCTCCTCGTCCGTCACCAGCTCGAGCGGCGACGCCTGCTTCGCCGCCGCCGCCACCACCACCACCACCATGTACCCGCCACCGACGACGCCGCCGCAGCAGCAGTTCATCCGCTTCGACGCACCACCCGCGGCGGCGGCGGCGGCATCCCCGACCGACCTCGCGCCCGTGCCACCACCGGCCACCGTCACGGCGGACGGCGACGGCGGCTGGGCGTCCGACGCCTTGTCCCTCGACGACGTGTTCCTCGGCGAGCTCACGGCCGGCGAGCCGCTGTTCCCTTACGCCGAGCTGTTCAGCGGCTTCGCCGGCGCGGCGCCGGACAGCAAGGCCACCTTGGAGCTCTCGGCGTGCTACTTCCCGAACATGGCGGAGATGTGGGCGGCCTCCGACCACGCCTACGCCAAGCCACAGGGTCTCTGCAACACCCTGACATAG
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| Protein seq | MGRAPCCDKASVKRGPWSPEEDEQLRSYVQSHGIGGNWIALPQKAGLNRCGKSCRLRWLNYLRPDIKHGGYTEQEDHIICSLYNSIGSRWSIIASKLPGRTDNDVKNYWNTKLKKKAMGAVQPRAAASAPSQCTSSAMAPALSPASSSVTSSSGDACFAAAATTTTTMYPPPTTPPQQQFIRFDAPPAAAAAASPTDLAPVPPPATVTADGDGGWASDALSLDDVFLGELTAGEPLFPYAELFSGFAGAAPDSKATLELSACYFPNMAEMWAASDHAYAKPQGLCNTLT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.364344 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0553400 | RBH | 0.0 | 0.0 | 1.415371 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49160 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0553400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0026200 | RBH | 0.150416 | 11.991484 | 2.497416 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026010 | RBH | 0.0 | 14.176291 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025980 | RBH | 0.0 | 1.766612 | 0.705314 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0026030 | RBH | 0.0 | 0.371473 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025990 | RBH | 0.0 | 10.927116 | 3.051771 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0427600 | RBH | 2.1032235 | 47.248968 | 6.754559 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025610 | RBH | 0.000000 | 0.754304 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0438500 | RBH | 2.1011395 | 22.873083 | 0.31264 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0025810 | RBH | 0.0 | 0.384508 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025720 | RBH | 0.0 | 11.852413 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025910 | RBH | 0.0 | 38.294048 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025940 | RBH | 0.0 | 0.657801 | 0.446023 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025960 | RBH | 0.0 | 1.097915 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G025420 | RBH | 0.0 | 0.697777 | 0.983182 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025970 | RBH | 0.000000 | 17.466595 | 0.551283 |
