Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g47650 | OGI:05073880 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:27302985-27304597 | ||||||||
| Gene Symbol | AP2/EREBP96, AP2/EREBP#096, OsRAV12, RAV12 | ||||||||||
| DNA seq | ATGGACAGCACGAGCTGTCTCTTGGACGACGCGAGCAGCGGCGCGTCCACGGGCAAGAAGGCGGCGGCGGCGGCGGCGTCGAAGGCGCTGCAGCGCGTGGGCAGCGGCGCCAGCGCGGTGATGGACGCGGCCGAGCCTGGCGCCGAGGCGGACTCGGGCGGCGAGCGGCGCGGCGGCGGCGGCGGGAAGCTGCCGTCGTCCAAGTACAAGGGCGTGGTGCCGCAACCGAACGGGCGGTGGGGCGCGCAGATATACGAGCGGCACCAGCGGGTGTGGCTCGGCACGTTCACCGGCGAGGCGGAGGCGGCGCGCGCCTACGACGTGGCGGCGCAGCGGTTCCGCGGCCGCGACGCCGTCACCAACTTCCGCCCGCTCGCCGAGTCCGACCCGGAGGCCGCCGTCGAGCTCCGCTTCCTCGCGTCCCGCTCCAAGGCCGAGGTCGTCGACATGCTCCGCAAGCACACCTACCTCGAGGAGCTCACGCAGAACAAGCGCGCCTTCGCCGCCATCTCCCCGCCGCCCCCCAAGCACCCCGCCTCCTCTCCGACGTCCTCCTCCGCCGCGCGCGAGCACCTGTTCGACAAGACGGTGACGCCCAGCGACGTCGGGAAGCTGAACCGGCTGGTGATCCCCAAGCAGCACGCCGAGAAGCACTTCCCGCTCCAGCTCCCTCCCCCTACCACAACCTCCTCCGTCGCCGCCGCCGCCGACGCCGCCGCCGGCGGCGGCGATTGCAAGGGCGTCCTCCTCAACTTCGAGGACGCCGCCGGGAAGGTGTGGAAATTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGGGGCTCCACGCCGGCGACGCCGTCGGCTTCTACCGCGCCGCCGGTAAGAACGCGCAGCTCTTCATCGACTGCAAGGTCCGGGCAAAACCCACCACCGCCGCCGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAGCTAGCACGCTGATGCAGCTAGCGTTTTTTTTGCTCATTCGCTTGCTTGCTTAATTAATTATTCAGATATATGCAACATAATTAATGGTTAGTTTAGTGACTCTTGATCAAATCTCTTGCTTGCTTGCTTGATTTCATTTCTTGTCATATATGCTCTACTCTACCACAATCGATCTAGTCTTTGTTAATCCTCCATTTCTTTCTCATTTTAATTTGGCAAGTGTATACTAATTCTGCCCTAGATTAAGAGCTTCATGCATGCCATAAGAAGCAACGTTTGATCGATCGAGCTAGCAAAACTCTTGTTGTCTCTAGCTCGATCTAGCTCAGCTTCTTTCCTTCTTCAATTCAATTCCTAATTAACTGTGAGATCGATGTGATGCAAAAATTAGAGGAGACATCAATCAATTTGTGGCTACTACTATACAT
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| CDS seq | ATGGACAGCACGAGCTGTCTCTTGGACGACGCGAGCAGCGGCGCGTCCACGGGCAAGAAGGCGGCGGCGGCGGCGGCGTCGAAGGCGCTGCAGCGCGTGGGCAGCGGCGCCAGCGCGGTGATGGACGCGGCCGAGCCTGGCGCCGAGGCGGACTCGGGCGGCGAGCGGCGCGGCGGCGGCGGCGGGAAGCTGCCGTCGTCCAAGTACAAGGGCGTGGTGCCGCAACCGAACGGGCGGTGGGGCGCGCAGATATACGAGCGGCACCAGCGGGTGTGGCTCGGCACGTTCACCGGCGAGGCGGAGGCGGCGCGCGCCTACGACGTGGCGGCGCAGCGGTTCCGCGGCCGCGACGCCGTCACCAACTTCCGCCCGCTCGCCGAGTCCGACCCGGAGGCCGCCGTCGAGCTCCGCTTCCTCGCGTCCCGCTCCAAGGCCGAGGTCGTCGACATGCTCCGCAAGCACACCTACCTCGAGGAGCTCACGCAGAACAAGCGCGCCTTCGCCGCCATCTCCCCGCCGCCCCCCAAGCACCCCGCCTCCTCTCCGACGTCCTCCTCCGCCGCGCGCGAGCACCTGTTCGACAAGACGGTGACGCCCAGCGACGTCGGGAAGCTGAACCGGCTGGTGATCCCCAAGCAGCACGCCGAGAAGCACTTCCCGCTCCAGCTCCCTCCCCCTACCACAACCTCCTCCGTCGCCGCCGCCGCCGACGCCGCCGCCGGCGGCGGCGATTGCAAGGGCGTCCTCCTCAACTTCGAGGACGCCGCCGGGAAGGTGTGGAAATTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGGGGCTCCACGCCGGCGACGCCGTCGGCTTCTACCGCGCCGCCGGTAAGAACGCGCAGCTCTTCATCGACTGCAAGGTCCGGGCAAAACCCACCACCGCCGCCGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAG
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| Protein seq | MDSTSCLLDDASSGASTGKKAAAAAASKALQRVGSGASAVMDAAEPGAEADSGGERRGGGGGKLPSSKYKGVVPQPNGRWGAQIYERHQRVWLGTFTGEAEAARAYDVAAQRFRGRDAVTNFRPLAESDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAFAAISPPPPKHPASSPTSSSAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPPPTTTSSVAAAADAAAGGGDCKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNAQLFIDCKVRAKPTTAAAAAAFLSAVAAAAAPPPAVKAIRLFGVDLLTAAAPELQDAGGAAMTKSKRAMDAMAESQAHVVFKKQCIELALT |
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| Function | AP2/ERF and B3 domain-containing protein Os05g0549800 [UniProtKB/Swiss-Prot:Q6L4H4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g47650 | LOC_Os05g47650.1 | Chr05 | 27302985 | 27304597 | + | MSU_osa1r7 | ||
| CDS seq | ATGGACAGCACGAGCTGTCTCTTGGACGACGCGAGCAGCGGCGCGTCCACGGGCAAGAAGGCGGCGGCGGCGGCGGCGTCGAAGGCGCTGCAGCGCGTGGGCAGCGGCGCCAGCGCGGTGATGGACGCGGCCGAGCCTGGCGCCGAGGCGGACTCGGGCGGCGAGCGGCGCGGCGGCGGCGGCGGGAAGCTGCCGTCGTCCAAGTACAAGGGCGTGGTGCCGCAACCGAACGGGCGGTGGGGCGCGCAGATATACGAGCGGCACCAGCGGGTGTGGCTCGGCACGTTCACCGGCGAGGCGGAGGCGGCGCGCGCCTACGACGTGGCGGCGCAGCGGTTCCGCGGCCGCGACGCCGTCACCAACTTCCGCCCGCTCGCCGAGTCCGACCCGGAGGCCGCCGTCGAGCTCCGCTTCCTCGCGTCCCGCTCCAAGGCCGAGGTCGTCGACATGCTCCGCAAGCACACCTACCTCGAGGAGCTCACGCAGAACAAGCGCGCCTTCGCCGCCATCTCCCCGCCGCCCCCCAAGCACCCCGCCTCCTCTCCGACGTCCTCCTCCGCCGCGCGCGAGCACCTGTTCGACAAGACGGTGACGCCCAGCGACGTCGGGAAGCTGAACCGGCTGGTGATCCCCAAGCAGCACGCCGAGAAGCACTTCCCGCTCCAGCTCCCTCCCCCTACCACAACCTCCTCCGTCGCCGCCGCCGCCGACGCCGCCGCCGGCGGCGGCGATTGCAAGGGCGTCCTCCTCAACTTCGAGGACGCCGCCGGGAAGGTGTGGAAATTCCGGTACTCCTACTGGAACAGCAGCCAGAGCTACGTGCTCACCAAGGGGTGGAGCCGCTTCGTCAAGGAGAAGGGGCTCCACGCCGGCGACGCCGTCGGCTTCTACCGCGCCGCCGGTAAGAACGCGCAGCTCTTCATCGACTGCAAGGTCCGGGCAAAACCCACCACCGCCGCCGCCGCCGCCGCCTTCCTCAGCGCGGTGGCCGCCGCCGCCGCGCCGCCACCCGCCGTGAAGGCTATCAGGCTGTTCGGTGTCGACCTGCTCACGGCGGCGGCGCCGGAGCTGCAGGACGCCGGCGGCGCCGCCATGACCAAGAGCAAGAGAGCCATGGACGCCATGGCTGAGTCACAAGCACACGTGGTTTTTAAGAAGCAATGCATAGAGCTTGCGCTAACCTAG
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| Protein seq | MDSTSCLLDDASSGASTGKKAAAAAASKALQRVGSGASAVMDAAEPGAEADSGGERRGGGGGKLPSSKYKGVVPQPNGRWGAQIYERHQRVWLGTFTGEAEAARAYDVAAQRFRGRDAVTNFRPLAESDPEAAVELRFLASRSKAEVVDMLRKHTYLEELTQNKRAFAAISPPPPKHPASSPTSSSAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPPPTTTSSVAAAADAAAGGGDCKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNAQLFIDCKVRAKPTTAAAAAAFLSAVAAAAAPPPAVKAIRLFGVDLLTAAAPELQDAGGAAMTKSKRAMDAMAESQAHVVFKKQCIELALT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.409430 | 0.975905 | 0.189515 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0549800 | RBH | 0.829011 | 1.806614 | 1.008070 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49830 | RBH | 0.397902 | 0.874783 | 0.466323 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0549800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025920 | RBH | 0.0 | 2.661185 | 0.734521 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025740 | RBH | 0.081678 | 0.681444 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025680 | RBH | 0.473819 | 2.281079 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025750 | RBH | 0.083683 | 0.069344 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025710 | RBH | 0.679764 | 3.363407 | 3.588626 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0424000 | RBH | 1.010759 | 11.996432 | 17.648813 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025350 | RBH | 0.0 | 0.261452 | 0.295554 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0435800 | RBH | 3.4327225 | 23.424985 | 0.702692 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0025550 | RBH | 0.106758 | 0.192100 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025450 | RBH | 0.200806 | 3.209863 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025650 | RBH | 2.201407 | 15.303874 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025670 | RBH | 0.302028 | 0.722746 | 0.393912 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025690 | RBH | 0.150636 | 3.088689 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G025130 | RBH | 0.187990 | 0.529698 | 0.423358 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025670 | RBH | 0.293242 | 29.712584 | 0.749695 |
