Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g46740 | OGI:05073340 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:27057383-27063217 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTAGAGATTGCTTGTACACTTCACTCAAAATTTAATGAACATTAAGGTTGACAAATATCAAATGATGATCTTCCTTCATGAAATACTAGTTACAACTCACACTGTTTGTTTACAAAGATTCCTCTCTTACAATAACTAATGTACTTAGTGTGTATATGTACTAATACAAATAAAAAACTGTGAACGAACAAAAGAATGGACAATCATCAATACTCTTCAAGATGTATATCAGCAATTCAGTAGGCACCATCCGTGTGGTTGTGGAGGCATTAGTATCTGACTCTATCCACCAAAGTTCATCCACAAATATGGTTGTGTGCATTGCTAATTGGTCTAGAGGCCAGAAGTTATACTTCCATTATCTTAAAAAAGAAAAGAAATTTACTAAGCATAAGAGAAAAACAAGATTCTTACCCAGTAGCTCATTCTAAAAATGACAAGTAATTTCACATGGGTTGTTGCTTTCACTGCTATTTCTTTGGAACCTAGTTAGTTGGATGGTTGTATTTCTTGAACACTCTCTCTTGGTTTTCCCTCCACCATTCCTCAGCCTGCTGCTCAGCAAACCTCCTCTTGCTAAACAAAAAAAAAAGATTGTAGAAGAATGAACCATAAATAAATGATCACCTGGAGTTGTTGCTTCAAACAAAAACATAGAAAGAACTATGCTTTCAGTGCACATCTTGAACTGAACACACTTCAATTGTAAACAAAAGCTTCGAAGTTTTTCCTTCAAAAGTGTGGATGGTGCAAGTGTTGTTTTTTGAAAGATGGACTATTGATAGATTAATCAAGTTGGAAGATATATTTTACATCCAAGAAGGATTTGAGGATGGAATACCTGAACCTGACACGCTTGAATACTTTGGTGCCATCCCTCAGCTGGATAAGCGTCACATACACTCCTGGCTCAAACTGCTCAATCAACTGCACTTCTCCATGAGTACCATACTTTGGTGCGAAGTCACCTGGAGCCTTCAAGTTGTTTTCCATGATACGGTGACATGGAGAGTCACTAGCCATGGCAATGGAAGAGCCACTAGCATTTCCAGAACTGCCATCTTGAGACACTGGCAGGCTACCCGTGCTACTTGACCTATGGTGTCCGATATCATGTCCAGTAAGGCCAGTAATCTCCACTAGATTACTACTTTGTCCTGCAAGAAATCTCTCCGACTGGCTTTGCAAAGTTTTTAAGTTGTCAGCAACATCACCGGGCACCCTGTCTGCAATAACCTTGAGCTGAAGAATGGAGGGTTGTGATATCATGAGTATATCCTCTAATAATGATAAATAAACATGAACTTTGAAGCAATTATGATCATACAAGACACTAGGATAACATGATAAACATGATTTTATATCGTGCGCCCTTTATTGTATTTTGATTGAGCTATAGAAACGTGTCAGTAATATAAATGGAACACAATAGAGCTACTATACTCCAAACTATACAGTAGAACAAATACGTACACTATCATGGAAAGTATAATAATAGATGAAGAGTTGCACAGTAATAGTAGTTTAATGTACCTCACTGTCAAGATGCTTAACAAAATCCAAGACAGTATTGCGCCTAGCAGATTCTTCTGAAGCCATAGAGGCAGCCTGTTTAGCTTTTCTTTCTGCTTTCTGTAGTTGCTCATCTTGAGTTTCACATTTCTGTTTCAACTTATTAACCTGTCAACATAAAAAATGGTTTTAACAAATTCAGCTAATCACATTGAAGAAATAGAACAATCTAGAGTGTTCTTTCATACCTGAGATTGCAACTTGGAAATGTCTTGATTCAGCAACTCGTTAGTCTTCTTCAAGCCATCATTGTCCACTTTACCGATCAGAGGACTTGCGGTCGCTGGAGGTGGACTTGGCTTCTTTGACGGTGGCGATGGTGAAAACATTGGCATGCCCATTTGCATTTGACCTCCCATTGTCATAGATTTTACGGTAGTTGGAACTGTACCAAATGTTCCTGCAAAAGCCATATCTTTGAACTGCAACATGGCAGGAACTTGTGATGCTTTCATCATGGACATAGGATCGGCTGGTTTTGTCTCATTTCTAACATTTTTTGTTTCTTGATACTTGACTGGCTCTGCTGGTGATGTCGTTGCAAGTCTGGAAGGCCTTATTTCTGGTCTCTCTAACTTATCTTTGATATCAATGGATCGCCTGGTGATGACATTCCTTTTGTTATATGAACTGATAACGCCGGTATCCGCGGCTTTCAGTTTCATGAAACATGAATCACATACACGGTGTGGCTTGCCAGGAGTTGGTGCCAAAGCAGCCTTGAGCACTTTCCTAGAACTGCATGCATGACAATGGACAAGTCCACAGTTGTAGCAATTGTGCCTCTTTCTTGTGAAACCAAATGGCTGCCTGCATCCAGAGCAAACAGACTGATCTGCACCTGAAACCCACTTATGTATGCAAATGCATGTAGTGAAATTTGAACCACATGAAATGCTCTTAACATGACGATCTTTCAATGCGTCAACAAGAGTTGGCTTCTTTTTGTCTTCAACACTACCATGTCCCAACCTTCCATTGGCTCCCATGCCCCATGTATATACTTCACTTCTTGAAGTCAAGGCTGCTACATGGTTAGAGCCACATGAGATCTCTTCAACCAACTCATTACCCAACTTATCTTGCACCATACATGGTTGTTTACCATCAGCTTTTGGATTCCCAAGCTGGCCATTGTTAGAGCTACCCATTGTGAAAACATGGCCAGATGTGGCAAGAGCAACAGTCATGCTATGTCCACAGGCCACCTGATGGAAATTATGGTCAACGAGTGCTTGAACACATGTTGGAACTAGCTTCGCTTCTTTATCGCCATGGCCCAAGCGATTCTTATCTCCATCTCCCCATGTAAACAGCTTTCTTGACATTGCATTTGTGCTTGCCTGACCACTGATTTCCACAATTGCTGCAGAATGCCATACTCCACATGCAACTTTCATTGCTCTGAATCCACTCAAAGCTTCTACCTCCTTTGGATATGCAACGCTTTCACGGTCTCCATGACCAAGAGAACCAAATGTGCCATCACCAAATGTGAAAAGTTTTCCACTTGACATGGTCAGTGCTGAATGCCATGAGCCACATGCAACAGAGAGTACCTGAAGCCCTTCTAGAGGCCCTGAAACTCTTTTCGGAAGCCAATGGCTAACTCCAGTTCCGTGCCCAAGTAATCCAGCATTGTATGATCCATCACCCCAATCATACAGATCACCAGATGCAGTTACAACACAAGTATGAAACTCCCCACACGCAATGTATTCCACATTGGACACTGCCAAGGATTCGACAAGTTTGGGACGACAGATATCAGTATCAGTACCATGGCCTAGCCGTCCACCAAGTTCTTCACCCCAAGTGAATACTTCTCCTTGCCGAGTAGTAAGGCCAATGTGCCTAGAGCCACATGCTATTTGCTGAACATCCAAAACAACATCTGATTCTAGAGGTTTTGGAATTAAAAAATCTGTTTTGCTGCACAAATAGTTGGAGGATCCTTCAGAGGGTAGCACCTCAGTCCACACCTCACCCCATACATAAACATCGCCGAGGGATTCGATGTCATCTAGTCCAGAACTTTGACTGGAAGAACTAGGGGCACTGGAAATACTAACTCGGCTATTGTCTCCTGTACTTGCTCTTAGCATATTTACGCGGTCTGATCCAACATCTGCTCTAATAGAATTCAATGAATTCGGTGTGCTATAACCAGCTGAGTTAAAACTACGTGTAATACTTGAGGCGATATCTAGCGTTGTATCATAGGAAGTGCTATCTTGATAGATTGTTACGTCCTGAAAAAAGAAACATTTGTTAAACAAGAACAGTAAGGTGATGATATTCTAGCTAAGTCAAACAACTATTACAGAATTAGTCGGTGTCATAATGACAGAAGTGATTTACTAGGTATATTAATTCTCTATAATTGTTTAACAATAATGATTTTGTATGCTCAAATATGGTTTTTGTGCATCCTATATTTTTATTAGCTCATCGGAATCTCAAGGAAGCTGAAACCTCCAACAGTCCAATCAAATCCTTAAAAGGGATGGCCACATTTGTACAAGGATTGGATTATAAATTGTTGTAGAAAATGAAGGTGAATTTTTGTTTGTACTCGACTTTAATATAAATTAAAATAATGTAAATGGGGAAAGGAGAATAACTCACTTCAGAAAATGATACTCTATCAGTTTGACCATCATTCAGAAAATTTAGACGGCATGAAGTAATCAGTGACTCAAGTGTCGAAAACCACACTTCTACTTCAGCTTGATCCTTGCAAACCTGTAAGAAAATTATTGTGTTCCATAAACTATAGCACCTAGGGGTAAAATCATTTAACCCCAGTTAATGAAAACGAGTACAAAGAATTTATATTTTACCAGATCAAGGGAACGTTGGCCGTTCTTGTATATAAGGGAAAATGATAGGTAATCCTTCTCAGGGCGTAAAAACCTCCTAAAAACAGCCTGTTAAAAATTGAAAATCCATAAGATCACAACTTAAAACGTAAAAGTTCTTTGGCTCGAAAAAAAATGTAAAAATTCATTAAAATGAAACAATTTACTCTCGGAGTATCACCAACAAGATATATTTTTCTTGCTGCATGTTTAAAATGAAACAGTTTACTCTTGGAGTATCACCAACAACATATATTTTTCTTGCTTCATGTTTACCAGCAAATTAACCACCAACAGTTAACTGTCCGGTGGCAATTCAACTTACAGTTCTCTGTCCAGGTATAACTTTAGACACAGAAGACAGTCTGAGGCACTTTTCCTTGTTGTGGGAGTACCAAACTAATGTATTTTCGTCCTGCGATAAAAAAAAATATCGTTACTTTCATCCTGTAGCAAAGAGCTGACATTGATTGCAAACGAACATACATATGAACTTACACTAGAAAGTCTGAACTCACGAATCTTGGGTTTTCCCTTCCGGCTATACTTGATAAGCTTGCTGCCTTTCTTTAAAGTAATAAGGGCCTTCAGATTTCAGAGAATGTGAAAAATAGCCAGGATCAACACTAAAAAAATCTTTAGCGGACAAATTTGTGTTGAGGCAAAATAGAGGGAAATGAAACAGGAAAGCATTGTGTAGAAGCTCACATTATCATCTGGTGTCATCTAAACAGCAACAGGTCAACATTCTATTTGCAACTCTTGATCACCTGAAACTATGCAGATAAACTAACACTGAGTTATCAGAGAGACAATAATGGATTTTGTTTTCAATGACATATATGAGAGAGTTGATGTGGTTTTTGTGCCCAGGGAGACAGAGATCCTTCATCCCGTTTGCTAGAAGAGCATTTCAGACAGCAACAAAACGAAAAACACTGCAAGCGATGTATATGTACACAACCTTCACAATCTCGATATCAAATGACAAGTAGCGGCCGGTTTGCTTCATATTATTAGTGCTGGATAAAATGCTCGTCCTGTTTTGGGATTTTTTTTGTTTTTTTAATGTGAAAAATTTCAAACTTATGATATGTATTTCGTTGGGTTGCTTGAAATTTGAACGATACATATTTTTCACCAAGAACACGTCGCCACAGATACACAAAACGAAATGTAAATGCTGAATCTACTGCAGATGGGATGGACATGAGGGGCAGCGTACTGTTCCTTACCAACAAAGAAGAGAACGATCCGAGCCGGCGGCGCCTAGGAGAGGAGGATACTCCGGCGGAGGAAGGCCGCGTGGGTTCCCGTGTCCGGTCGCCGGCGGTGAGGTCGCCGATCGATGATTGCGCATCACCGGATTCCCGTTGAGAGGAGGACGACGAAAAAAGAGGA
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| CDS seq | ATGACACCAGATGATAATGCCCTTATTACTTTAAAGAAAGGCAGCAAGCTTATCAAGTATAGCCGGAAGGGAAAACCCAAGATTCGTGAGTTCAGACTTTCTAGTGACGAAAATACATTAGTTTGGTACTCCCACAACAAGGAAAAGTGCCTCAGACTGTCTTCTGTGTCTAAAGTTATACCTGGACAGAGAACTGCTGTTTTTAGGAGGTTTTTACGCCCTGAGAAGGATTACCTATCATTTTCCCTTATATACAAGAACGGCCAACGTTCCCTTGATCTGGTTTGCAAGGATCAAGCTGAAGTAGAAGTGTGGTTTTCGACACTTGAGTCACTGATTACTTCATGCCGTCTAAATTTTCTGAATGATGGTCAAACTGATAGAGTATCATTTTCTGAAGACGTAACAATCTATCAAGATAGCACTTCCTATGATACAACGCTAGATATCGCCTCAAGTATTACACGTAGTTTTAACTCAGCTGGTTATAGCACACCGAATTCATTGAATTCTATTAGAGCAGATGTTGGATCAGACCGCGTAAATATGCTAAGAGCAAGTACAGGAGACAATAGCCGAGTTAGTATTTCCAGTGCCCCTAGTTCTTCCAGTCAAAGTTCTGGACTAGATGACATCGAATCCCTCGGCGATGTTTATGTATGGGGTGAGGTGTGGACTGAGGTGCTACCCTCTGAAGGATCCTCCAACTATTTGTGCAGCAAAACAGATTTTTTAATTCCAAAACCTCTAGAATCAGATGTTGTTTTGGATGTTCAGCAAATAGCATGTGGCTCTAGGCACATTGGCCTTACTACTCGGCAAGGAGAAGTATTCACTTGGGGTGAAGAACTTGGTGGACGGCTAGGCCATGGTACTGATACTGATATCTGTCGTCCCAAACTTGTCGAATCCTTGGCAGTGTCCAATGTGGAATACATTGCGTGTGGGGAGTTTCATACTTGTGTTGTAACTGCATCTGGTGATCTGTATGATTGGGGTGATGGATCATACAATGCTGGATTACTTGGGCACGGAACTGGAGTTAGCCATTGGCTTCCGAAAAGAGTTTCAGGGCCTCTAGAAGGGCTTCAGGTACTCTCTGTTGCATGTGGCTCATGGCATTCAGCACTGACCATGTCAAGTGGAAAACTTTTCACATTTGGTGATGGCACATTTGGTTCTCTTGGTCATGGAGACCGTGAAAGCGTTGCATATCCAAAGGAGGTAGAAGCTTTGAGTGGATTCAGAGCAATGAAAGTTGCATGTGGAGTATGGCATTCTGCAGCAATTGTGGAAATCAGTGGTCAGGCAAGCACAAATGCAATGTCAAGAAAGCTGTTTACATGGGGAGATGGAGATAAGAATCGCTTGGGCCATGGCGATAAAGAAGCGAAGCTAGTTCCAACATGTGTTCAAGCACTCGTTGACCATAATTTCCATCAGGTGGCCTGTGGACATAGCATGACTGTTGCTCTTGCCACATCTGGCCATGTTTTCACAATGGGTAGCTCTAACAATGGCCAGCTTGGGAATCCAAAAGCTGATGGTAAACAACCATGTATGGTGCAAGATAAGTTGGGTAATGAGTTGGTTGAAGAGATCTCATGTGGCTCTAACCATGTAGCAGCCTTGACTTCAAGAAGTGAAGTATATACATGGGGCATGGGAGCCAATGGAAGGTTGGGACATGGTAGTGTTGAAGACAAAAAGAAGCCAACTCTTGTTGACGCATTGAAAGATCGTCATGTTAAGAGCATTTCATGTGGTTCAAATTTCACTACATGCATTTGCATACATAAGTGGGTTTCAGGTGCAGATCAGTCTGTTTGCTCTGGATGCAGGCAGCCATTTGGTTTCACAAGAAAGAGGCACAATTGCTACAACTGTGGACTTGTCCATTGTCATGCATGCAGTTCTAGGAAAGTGCTCAAGGCTGCTTTGGCACCAACTCCTGGCAAGCCACACCGTGTATGTGATTCATGTTTCATGAAACTGAAAGCCGCGGATACCGGCGTTATCAGTTCATATAACAAAAGGAATGTCATCACCAGGCGATCCATTGATATCAAAGATAAGTTAGAGAGACCAGAAATAAGGCCTTCCAGACTTGCAACGACATCACCAGCAGAGCCAGTCAAGTATCAAGAAACAAAAAATGTTAGAAATGAGACAAAACCAGCCGATCCTATGTCCATGATGAAAGCATCACAAGTTCCTGCCATGTTGCAGTTCAAAGATATGGCTTTTGCAGGAACATTTGGTACAGTTCCAACTACCGTAAAATCTATGACAATGGGAGGTCAAATGCAAATGGGCATGCCAATGTTTTCACCATCGCCACCGTCAAAGAAGCCAAGTCCACCTCCAGCGACCGCAAGTCCTCTGATCGGTAAAGTGGACAATGATGGCTTGAAGAAGACTAACGAGTTGCTGAATCAAGACATTTCCAAGTTGCAATCTCAGGTTAATAAGTTGAAACAGAAATGTGAAACTCAAGATGAGCAACTACAGAAAGCAGAAAGAAAAGCTAAACAGGCTGCCTCTATGGCTTCAGAAGAATCTGCTAGGCGCAATACTGTCTTGGATTTTGTTAAGCATCTTGACAGTGAGCTCAAGGTTATTGCAGACAGGGTGCCCGGTGATGTTGCTGACAACTTAAAAACTTTGCAAAGCCAGTCGGAGAGATTTCTTGCAGGACAAAGTAGTAATCTAGTGGAGATTACTGGCCTTACTGGACATGATATCGGACACCATAGGTCAAGTAGCACGGGTAGCCTGCCAGTGTCTCAAGATGGCAGTTCTGGAAATGCTAGTGGCTCTTCCATTGCCATGGCTAGTGACTCTCCATGTCACCGTATCATGGAAAACAACTTGAAGGCTCCAGGTGACTTCGCACCAAAGTATGGTACTCATGGAGAAGTGCAGTTGATTGAGCAGTTTGAGCCAGGAGTGTATGTGACGCTTATCCAGCTGAGGGATGGCACCAAAGTATTCAAGCGTGTCAGGTTCAGCAAGAGGAGGTTTGCTGAGCAGCAGGCTGAGGAATGGTGGAGGGAAAACCAAGAGAGAGTGTTCAAGAAATACAACCATCCAACTAACTAG
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| Protein seq | MTPDDNALITLKKGSKLIKYSRKGKPKIREFRLSSDENTLVWYSHNKEKCLRLSSVSKVIPGQRTAVFRRFLRPEKDYLSFSLIYKNGQRSLDLVCKDQAEVEVWFSTLESLITSCRLNFLNDGQTDRVSFSEDVTIYQDSTSYDTTLDIASSITRSFNSAGYSTPNSLNSIRADVGSDRVNMLRASTGDNSRVSISSAPSSSSQSSGLDDIESLGDVYVWGEVWTEVLPSEGSSNYLCSKTDFLIPKPLESDVVLDVQQIACGSRHIGLTTRQGEVFTWGEELGGRLGHGTDTDICRPKLVESLAVSNVEYIACGEFHTCVVTASGDLYDWGDGSYNAGLLGHGTGVSHWLPKRVSGPLEGLQVLSVACGSWHSALTMSSGKLFTFGDGTFGSLGHGDRESVAYPKEVEALSGFRAMKVACGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGDKEAKLVPTCVQALVDHNFHQVACGHSMTVALATSGHVFTMGSSNNGQLGNPKADGKQPCMVQDKLGNELVEEISCGSNHVAALTSRSEVYTWGMGANGRLGHGSVEDKKKPTLVDALKDRHVKSISCGSNFTTCICIHKWVSGADQSVCSGCRQPFGFTRKRHNCYNCGLVHCHACSSRKVLKAALAPTPGKPHRVCDSCFMKLKAADTGVISSYNKRNVITRRSIDIKDKLERPEIRPSRLATTSPAEPVKYQETKNVRNETKPADPMSMMKASQVPAMLQFKDMAFAGTFGTVPTTVKSMTMGGQMQMGMPMFSPSPPSKKPSPPPATASPLIGKVDNDGLKKTNELLNQDISKLQSQVNKLKQKCETQDEQLQKAERKAKQAASMASEESARRNTVLDFVKHLDSELKVIADRVPGDVADNLKTLQSQSERFLAGQSSNLVEITGLTGHDIGHHRSSSTGSLPVSQDGSSGNASGSSIAMASDSPCHRIMENNLKAPGDFAPKYGTHGEVQLIEQFEPGVYVTLIQLRDGTKVFKRVRFSKRRFAEQQAEEWWRENQERVFKKYNHPTN |
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| Function | PH, RCC1 and FYVE domains-containing protein 1 [UniProtKB/Swiss-Prot:Q947D2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g46740 | LOC_Os05g46740.1 | Chr05 | 27057383 | 27063217 | - | MSU_osa1r7 | ||
| CDS seq | ATGACACCAGATGATAATGCCCTTATTACTTTAAAGAAAGGCAGCAAGCTTATCAAGTATAGCCGGAAGGGAAAACCCAAGATTCGTGAGTTCAGACTTTCTAGTGACGAAAATACATTAGTTTGGTACTCCCACAACAAGGAAAAGTGCCTCAGACTGTCTTCTGTGTCTAAAGTTATACCTGGACAGAGAACTGCTGTTTTTAGGAGGTTTTTACGCCCTGAGAAGGATTACCTATCATTTTCCCTTATATACAAGAACGGCCAACGTTCCCTTGATCTGGTTTGCAAGGATCAAGCTGAAGTAGAAGTGTGGTTTTCGACACTTGAGTCACTGATTACTTCATGCCGTCTAAATTTTCTGAATGATGGTCAAACTGATAGAGTATCATTTTCTGAAGACGTAACAATCTATCAAGATAGCACTTCCTATGATACAACGCTAGATATCGCCTCAAGTATTACACGTAGTTTTAACTCAGCTGGTTATAGCACACCGAATTCATTGAATTCTATTAGAGCAGATGTTGGATCAGACCGCGTAAATATGCTAAGAGCAAGTACAGGAGACAATAGCCGAGTTAGTATTTCCAGTGCCCCTAGTTCTTCCAGTCAAAGTTCTGGACTAGATGACATCGAATCCCTCGGCGATGTTTATGTATGGGGTGAGGTGTGGACTGAGGTGCTACCCTCTGAAGGATCCTCCAACTATTTGTGCAGCAAAACAGATTTTTTAATTCCAAAACCTCTAGAATCAGATGTTGTTTTGGATGTTCAGCAAATAGCATGTGGCTCTAGGCACATTGGCCTTACTACTCGGCAAGGAGAAGTATTCACTTGGGGTGAAGAACTTGGTGGACGGCTAGGCCATGGTACTGATACTGATATCTGTCGTCCCAAACTTGTCGAATCCTTGGCAGTGTCCAATGTGGAATACATTGCGTGTGGGGAGTTTCATACTTGTGTTGTAACTGCATCTGGTGATCTGTATGATTGGGGTGATGGATCATACAATGCTGGATTACTTGGGCACGGAACTGGAGTTAGCCATTGGCTTCCGAAAAGAGTTTCAGGGCCTCTAGAAGGGCTTCAGGTACTCTCTGTTGCATGTGGCTCATGGCATTCAGCACTGACCATGTCAAGTGGAAAACTTTTCACATTTGGTGATGGCACATTTGGTTCTCTTGGTCATGGAGACCGTGAAAGCGTTGCATATCCAAAGGAGGTAGAAGCTTTGAGTGGATTCAGAGCAATGAAAGTTGCATGTGGAGTATGGCATTCTGCAGCAATTGTGGAAATCAGTGGTCAGGCAAGCACAAATGCAATGTCAAGAAAGCTGTTTACATGGGGAGATGGAGATAAGAATCGCTTGGGCCATGGCGATAAAGAAGCGAAGCTAGTTCCAACATGTGTTCAAGCACTCGTTGACCATAATTTCCATCAGGTGGCCTGTGGACATAGCATGACTGTTGCTCTTGCCACATCTGGCCATGTTTTCACAATGGGTAGCTCTAACAATGGCCAGCTTGGGAATCCAAAAGCTGATGGTAAACAACCATGTATGGTGCAAGATAAGTTGGGTAATGAGTTGGTTGAAGAGATCTCATGTGGCTCTAACCATGTAGCAGCCTTGACTTCAAGAAGTGAAGTATATACATGGGGCATGGGAGCCAATGGAAGGTTGGGACATGGTAGTGTTGAAGACAAAAAGAAGCCAACTCTTGTTGACGCATTGAAAGATCGTCATGTTAAGAGCATTTCATGTGGTTCAAATTTCACTACATGCATTTGCATACATAAGTGGGTTTCAGGTGCAGATCAGTCTGTTTGCTCTGGATGCAGGCAGCCATTTGGTTTCACAAGAAAGAGGCACAATTGCTACAACTGTGGACTTGTCCATTGTCATGCATGCAGTTCTAGGAAAGTGCTCAAGGCTGCTTTGGCACCAACTCCTGGCAAGCCACACCGTGTATGTGATTCATGTTTCATGAAACTGAAAGCCGCGGATACCGGCGTTATCAGTTCATATAACAAAAGGAATGTCATCACCAGGCGATCCATTGATATCAAAGATAAGTTAGAGAGACCAGAAATAAGGCCTTCCAGACTTGCAACGACATCACCAGCAGAGCCAGTCAAGTATCAAGAAACAAAAAATGTTAGAAATGAGACAAAACCAGCCGATCCTATGTCCATGATGAAAGCATCACAAGTTCCTGCCATGTTGCAGTTCAAAGATATGGCTTTTGCAGGAACATTTGGTACAGTTCCAACTACCGTAAAATCTATGACAATGGGAGGTCAAATGCAAATGGGCATGCCAATGTTTTCACCATCGCCACCGTCAAAGAAGCCAAGTCCACCTCCAGCGACCGCAAGTCCTCTGATCGGTAAAGTGGACAATGATGGCTTGAAGAAGACTAACGAGTTGCTGAATCAAGACATTTCCAAGTTGCAATCTCAGGTTAATAAGTTGAAACAGAAATGTGAAACTCAAGATGAGCAACTACAGAAAGCAGAAAGAAAAGCTAAACAGGCTGCCTCTATGGCTTCAGAAGAATCTGCTAGGCGCAATACTGTCTTGGATTTTGTTAAGCATCTTGACAGTGAGCTCAAGGTTATTGCAGACAGGGTGCCCGGTGATGTTGCTGACAACTTAAAAACTTTGCAAAGCCAGTCGGAGAGATTTCTTGCAGGACAAAGTAGTAATCTAGTGGAGATTACTGGCCTTACTGGACATGATATCGGACACCATAGGTCAAGTAGCACGGGTAGCCTGCCAGTGTCTCAAGATGGCAGTTCTGGAAATGCTAGTGGCTCTTCCATTGCCATGGCTAGTGACTCTCCATGTCACCGTATCATGGAAAACAACTTGAAGGCTCCAGGTGACTTCGCACCAAAGTATGGTACTCATGGAGAAGTGCAGTTGATTGAGCAGTTTGAGCCAGGAGTGTATGTGACGCTTATCCAGCTGAGGGATGGCACCAAAGTATTCAAGCGTGTCAGGTTCAGCAAGAGGAGGTTTGCTGAGCAGCAGGCTGAGGAATGGTGGAGGGAAAACCAAGAGAGAGTGTTCAAGAAATACAACCATCCAACTAACTAG
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| Protein seq | MTPDDNALITLKKGSKLIKYSRKGKPKIREFRLSSDENTLVWYSHNKEKCLRLSSVSKVIPGQRTAVFRRFLRPEKDYLSFSLIYKNGQRSLDLVCKDQAEVEVWFSTLESLITSCRLNFLNDGQTDRVSFSEDVTIYQDSTSYDTTLDIASSITRSFNSAGYSTPNSLNSIRADVGSDRVNMLRASTGDNSRVSISSAPSSSSQSSGLDDIESLGDVYVWGEVWTEVLPSEGSSNYLCSKTDFLIPKPLESDVVLDVQQIACGSRHIGLTTRQGEVFTWGEELGGRLGHGTDTDICRPKLVESLAVSNVEYIACGEFHTCVVTASGDLYDWGDGSYNAGLLGHGTGVSHWLPKRVSGPLEGLQVLSVACGSWHSALTMSSGKLFTFGDGTFGSLGHGDRESVAYPKEVEALSGFRAMKVACGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGDKEAKLVPTCVQALVDHNFHQVACGHSMTVALATSGHVFTMGSSNNGQLGNPKADGKQPCMVQDKLGNELVEEISCGSNHVAALTSRSEVYTWGMGANGRLGHGSVEDKKKPTLVDALKDRHVKSISCGSNFTTCICIHKWVSGADQSVCSGCRQPFGFTRKRHNCYNCGLVHCHACSSRKVLKAALAPTPGKPHRVCDSCFMKLKAADTGVISSYNKRNVITRRSIDIKDKLERPEIRPSRLATTSPAEPVKYQETKNVRNETKPADPMSMMKASQVPAMLQFKDMAFAGTFGTVPTTVKSMTMGGQMQMGMPMFSPSPPSKKPSPPPATASPLIGKVDNDGLKKTNELLNQDISKLQSQVNKLKQKCETQDEQLQKAERKAKQAASMASEESARRNTVLDFVKHLDSELKVIADRVPGDVADNLKTLQSQSERFLAGQSSNLVEITGLTGHDIGHHRSSSTGSLPVSQDGSSGNASGSSIAMASDSPCHRIMENNLKAPGDFAPKYGTHGEVQLIEQFEPGVYVTLIQLRDGTKVFKRVRFSKRRFAEQQAEEWWRENQERVFKKYNHPTN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g46740 | LOC_Os05g46740.2 | Chr05 | 27057386 | 27063217 | - | MSU_osa1r7 | ||
| CDS seq | ATGACACCAGATGATAATGCCCTTATTACTTTAAAGAAAGGCAGCAAGCTTATCAAGTATAGCCGGAAGGGAAAACCCAAGATTCGTGAGTTCAGACTTTCTAGTGACGAAAATACATTAGTTTGGTACTCCCACAACAAGGAAAAGTGCCTCAGACTGTCTTCTGTGTCTAAAGTTATACCTGGACAGAGAACTGCTGTTTTTAGGAGGTTTTTACGCCCTGAGAAGGATTACCTATCATTTTCCCTTATATACAAGAACGGCCAACGTTCCCTTGATCTGGTTTGCAAGGATCAAGCTGAAGTAGAAGTGTGGTTTTCGACACTTGAGTCACTGATTACTTCATGCCGTCTAAATTTTCTGAATGATGGTCAAACTGATAGAGTATCATTTTCTGAAGACGTAACAATCTATCAAGATAGCACTTCCTATGATACAACGCTAGATATCGCCTCAAGTATTACACGTAGTTTTAACTCAGCTGGTTATAGCACACCGAATTCATTGAATTCTATTAGAGCAGATGTTGGATCAGACCGCGTAAATATGCTAAGAGCAAGTACAGGAGACAATAGCCGAGTTAGTATTTCCAGTGCCCCTAGTTCTTCCAGTCAAAGTTCTGGACTAGATGACATCGAATCCCTCGGCGATGTTTATGTATGGGGTGAGGTGTGGACTGAGGTGCTACCCTCTGAAGGATCCTCCAACTATTTGTGCAGCAAAACAGATTTTTTAATTCCAAAACCTCTAGAATCAGATGTTGTTTTGGATGTTCAGCAAATAGCATGTGGCTCTAGGCACATTGGCCTTACTACTCGGCAAGGAGAAGTATTCACTTGGGGTGAAGAACTTGGTGGACGGCTAGGCCATGGTACTGATACTGATATCTGTCGTCCCAAACTTGTCGAATCCTTGGCAGTGTCCAATGTGGAATACATTGCGTGTGGGGAGTTTCATACTTGTGTTGTAACTGCATCTGGTGATCTGTATGATTGGGGTGATGGATCATACAATGCTGGATTACTTGGGCACGGAACTGGAGTTAGCCATTGGCTTCCGAAAAGAGTTTCAGGGCCTCTAGAAGGGCTTCAGGTACTCTCTGTTGCATGTGGCTCATGGCATTCAGCACTGACCATGTCAAGTGGAAAACTTTTCACATTTGGTGATGGCACATTTGGTTCTCTTGGTCATGGAGACCGTGAAAGCGTTGCATATCCAAAGGAGGTAGAAGCTTTGAGTGGATTCAGAGCAATGAAAGTTGCATGTGGAGTATGGCATTCTGCAGCAATTGTGGAAATCAGTGGTCAGGCAAGCACAAATGCAATGTCAAGAAAGCTGTTTACATGGGGAGATGGAGATAAGAATCGCTTGGGCCATGGCGATAAAGAAGCGAAGCTAGTTCCAACATGTGTTCAAGCACTCGTTGACCATAATTTCCATCAGGTGGCCTGTGGACATAGCATGACTGTTGCTCTTGCCACATCTGGCCATGTTTTCACAATGGGTAGCTCTAACAATGGCCAGCTTGGGAATCCAAAAGCTGATGGTAAACAACCATGTATGGTGCAAGATAAGTTGGGTAATGAGTTGGTTGAAGAGATCTCATGTGGCTCTAACCATGTAGCAGCCTTGACTTCAAGAAGTGAAGTATATACATGGGGCATGGGAGCCAATGGAAGGTTGGGACATGGTAGTGTTGAAGACAAAAAGAAGCCAACTCTTGTTGACGCATTGAAAGATCGTCATGTTAAGAGCATTTCATGTGGTTCAAATTTCACTACATGCATTTGCATACATAAGTGGGTTTCAGGTGCAGATCAGTCTGTTTGCTCTGGATGCAGGCAGCCATTTGGTTTCACAAGAAAGAGGCACAATTGCTACAACTGTGGACTTGTCCATTGTCATGCATGCAGTTCTAGGAAAGTGCTCAAGGCTGCTTTGGCACCAACTCCTGGCAAGCCACACCGTGTATGTGATTCATGTTTCATGAAACTGAAAGCCGCGGATACCGGCGTTATCAGTTCATATAACAAAAGGAATGTCATCACCAGGCGATCCATTGATATCAAAGATAAGTTAGAGAGACCAGAAATAAGGCCTTCCAGACTTGCAACGACATCACCAGCAGAGCCAGTCAAGTATCAAGAAACAAAAAATGTTAGAAATGAGACAAAACCAGCCGATCCTATGTCCATGATGAAAGCATCACAAGTTCCTGCCATGTTGCAGTTCAAAGATATGGCTTTTGCAGGAACATTTGGTACAGTTCCAACTACCGTAAAATCTATGACAATGGGAGGTCAAATGCAAATGGGCATGCCAATGTTTTCACCATCGCCACCGTCAAAGAAGCCAAGTCCACCTCCAGCGACCGCAAGTCCTCTGATCGGTAAAGTGGACAATGATGGCTTGAAGAAGACTAACGAGTTGCTGAATCAAGACATTTCCAAGTTGCAATCTCAGGTTAATAAGTTGAAACAGAAATGTGAAACTCAAGATGAGCAACTACAGAAAGCAGAAAGAAAAGCTAAACAGGCTGCCTCTATGGCTTCAGAAGAATCTGCTAGGCGCAATACTGTCTTGGATTTTGTTAAGCATCTTGACAGTGAGCTCAAGGTTATTGCAGACAGGGTGCCCGGTGATGTTGCTGACAACTTAAAAACTTTGCAAAGCCAGTCGGAGAGATTTCTTGCAGGACAAAGTAGTAATCTAGTGGAGATTACTGGCCTTACTGGACATGATATCGGACACCATAGGTCAAGTAGCACGGGTAGCCTGCCAGTGTCTCAAGATGGCAGTTCTGGAAATGCTAGTGGCTCTTCCATTGCCATGGCTAGTGACTCTCCATGTCACCGTATCATGGAAAACAACTTGAAGGCTCCAGGTGACTTCGCACCAAAGTATGGTACTCATGGAGAAGTGCAGTTGATTGAGCAGTTTGAGCCAGGAGTGTATGTGACGCTTATCCAGCTGAGGGATGGCACCAAAGTATTCAAGCGTGTCAGGTTCAGCAAGAGGAGGTTTGCTGAGCAGCAGGCTGAGGAATGGTGGAGGGAAAACCAAGAGAGAGTGTTCAAGAAATACAACCATCCAACTAACTAG
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| Protein seq | MTPDDNALITLKKGSKLIKYSRKGKPKIREFRLSSDENTLVWYSHNKEKCLRLSSVSKVIPGQRTAVFRRFLRPEKDYLSFSLIYKNGQRSLDLVCKDQAEVEVWFSTLESLITSCRLNFLNDGQTDRVSFSEDVTIYQDSTSYDTTLDIASSITRSFNSAGYSTPNSLNSIRADVGSDRVNMLRASTGDNSRVSISSAPSSSSQSSGLDDIESLGDVYVWGEVWTEVLPSEGSSNYLCSKTDFLIPKPLESDVVLDVQQIACGSRHIGLTTRQGEVFTWGEELGGRLGHGTDTDICRPKLVESLAVSNVEYIACGEFHTCVVTASGDLYDWGDGSYNAGLLGHGTGVSHWLPKRVSGPLEGLQVLSVACGSWHSALTMSSGKLFTFGDGTFGSLGHGDRESVAYPKEVEALSGFRAMKVACGVWHSAAIVEISGQASTNAMSRKLFTWGDGDKNRLGHGDKEAKLVPTCVQALVDHNFHQVACGHSMTVALATSGHVFTMGSSNNGQLGNPKADGKQPCMVQDKLGNELVEEISCGSNHVAALTSRSEVYTWGMGANGRLGHGSVEDKKKPTLVDALKDRHVKSISCGSNFTTCICIHKWVSGADQSVCSGCRQPFGFTRKRHNCYNCGLVHCHACSSRKVLKAALAPTPGKPHRVCDSCFMKLKAADTGVISSYNKRNVITRRSIDIKDKLERPEIRPSRLATTSPAEPVKYQETKNVRNETKPADPMSMMKASQVPAMLQFKDMAFAGTFGTVPTTVKSMTMGGQMQMGMPMFSPSPPSKKPSPPPATASPLIGKVDNDGLKKTNELLNQDISKLQSQVNKLKQKCETQDEQLQKAERKAKQAASMASEESARRNTVLDFVKHLDSELKVIADRVPGDVADNLKTLQSQSERFLAGQSSNLVEITGLTGHDIGHHRSSSTGSLPVSQDGSSGNASGSSIAMASDSPCHRIMENNLKAPGDFAPKYGTHGEVQLIEQFEPGVYVTLIQLRDGTKVFKRVRFSKRRFAEQQAEEWWRENQERVFKKYNHPTN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.044011 | 0.352767 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0545200 | RBH | 0.0 | 0.065903 | 1.227205 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g50470 | RBH | 0.0 | 0.0 | 0.353599 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0545200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025680 | RBH | 0.0 | 0.0 | 2.857615 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025430 | RBH | 0.0 | 0.0 | 2.120738 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025440 | RBH | 0.0 | 0.0 | 6.553099 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025480 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025460 | RBH | 0.0 | 0.0 | 8.547757 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0421300 | RBH | 0 | 0.0081625 | 0.0064615 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025120 | RBH | 0.0 | 0.0 | 2.134681 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0432900 | RBH | 0 | 0.0091015 | 0.0659925 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0025280 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025180 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025380 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025360 | RBH | 0.0 | 0.0 | 0.383191 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025420 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024860 | RBH | 0.0 | 0.0 | 0.715093 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025280 | RBH | 0.0 | 0.0 | 9.345218 |
