Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g46270 | OGI:05072550 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:26830170-26834200 | ||||||||
| Gene Symbol | FEN1, OsFEN1, OsFEN-1a, FEN-1, OsFEN-1 | ||||||||||
| DNA seq | TTTTGCGAATCGGAACCAGTTAATTTTGCGCGGCAAAGCCAATTTTGTTGGTTCTTCATACACTACGCAGCAACCAAACCAACACTACAAATCCCTAGTAGAGAAGAGAGACGTACTACATAGATGAACTAGTATTAGACGAAGTTCTGGACTTCTGGTTTACTAGGAACATAGAAAACATCAGATGGAGGATGAGTTACAAACATGGGAGTTAAAATTGAAATGACACGTGCAGGAGGTCTTGTTGATGAATGGCACAATCGAACTTATTTCTTCTTTCCGCCGGCTCCCTTTGTTTTCTTGTTAGCGACTGCTTTGGTTGGTTTTTCTGAAGTGTCCTGCCATTATATCATAGAAACAAATCATGAGACATAATATTGCTACAAAAATATAATTATGGCCACAACATTTGCAAGCCTACATATAGTATAGCACTATGGTTGCAGTTTTACATGGAACAGTACAAGATCTGCGAGAAAATCATGCCAAACAAGGCTATAACCTTCTCATAGTAGAAGGATTTTAGCATGGCTTACAAGATTCAGCTTTGGCTATTGTATCTGCCTACTTCTGGCTGCTTGCAAATATATTGTTGAGTACTGGTCTAATGGACATATTTTTATCATTCATCTGTGATCTGTTATTTGGCAGGTACATTGGACAATCAAAACATCAAACCACGTGATTCAACATTGTTAGTTGAATGGACAGATAAAGTACGCAATTCAATGACATGAATTGGTTGTATATCATGCTACAATGGATGAACCTGGAGAAGGCTAAAAGTTCTAAATTTAAGCACGACAAGATTGATGGCATTCAGGTTAAGGTACCTTTCTTTTCAGAGGCACTGATGTGCTAACAACTGGCTTGAAGAAGGATTCGAGCCTGGTCACATTAATTCAAGAGTTGGTATGGTTTAACAAATGATATAGGCATGCAACACTCTTAGAACCAAAGTATAAAAATGTACCACAATGCTCACGTCTCACCTTCCTTGGGAAGATTTGTTCTTGGCAAATTTAATCTTCTCTATGGCCTACATAAACCGGAGAAACAAATTGCTGATAAAAATATTTCAAGAATATAACATAGTAAGTCAGAAGAAAAGTGCATGCCTTTGTCACTCTATCTTGGTTGAAACCATTTTCTTTCACCAGAAACTCTACAAGACCCTGGAGAAAGAATTAAAGTATTGGGACGACATCACTTGTAAAATTTGAAGGCAAGGAAAAAAAGGTGACAGGCATACTTCCTCATCGGGAGCATTCCATTTCAGCTCAGGAATATCCAATGTAACATTGGGTTCCTTGAACAAGCGTCGAGCTTCTTGATAAGGCCAGTCCTCAGGAATCTGATATCTGCAGTAGGCGATAGATATGATCAAAATTTAGCACAAATTAGCATAGGAAATGGTCTTCATCACATTACAATACATCATTACATCTAAGTAAGATAATGCGACCAAGAAATGAAATAAAGTGGCACATATAGAAAATTTTGGGCTGCCTTTGCCACACAGCTGATATACATGTCTCAGTTGAGTTCTCAGTCAAGTGGGAAATATTCAAATAGTTCAAAAGATTAACCTGTCTTTATTTATGTTTTCCAGAATGCTTTCTATGGACCCATGTTGACGAATAAGTTTCAGAGCTGTTTGACCTCCAATACCTAGCGGACAAGCACACATAGTTGGTTAGGAAAAAAAGTTTGCATGGACAGAAATTCAAGCAAGCAAGAATTTATAGGAATACTACTCATGAGAAGAGGGAAAGCAAAAATACCTTTAATGCTATCACAATAGTCACATCCAGATAGGATGCACAAGTCAATGAATTGGTCCATAGTGAGTTCAAGCTCCTCCAAAACCTGCAATATGAAAATTGGTCAAGTGTGTACAACATCAGTGTCTGTACCAAGCAAATCACAGTGCTGCATACTTTCGCGACTTCAAATTCCATAACTGGAATTTTCTTGGAACTTGGATCCATCAAATGACGAAGAAACCGTGGAGCTCCAAAAGTAAGAGAGTCCATATCTTCTGATGCAACTGCATAAACCTATAAAAAAAACAGTAATTAATAAAAATGGAAGCAAGAGATGGAAACAAGAAGGCAGAAGTCCACTATGTTAACATTACCATATCATTTATGCAAAGTGCAGCACATTCTGCTTCTGCTTCACATGGCGCCTATTGGTACCGGAAAGAAGATGTCTTTGGATGAGATTGAGAGCATGGCAAATACATGATAAATCATAGATTTTATGCTAGCATAGTAAAATAAACAAATCCAACGATTATATATTGACTCATTCCCTGAAAAAGCATGTGGCACCAAAGAAAATTGGATTTACCTCTACAACAGGAACCCCCATAAGTCTTAATAGTCGTTTACATTCTTCATTGTGCTGCTTCGTGACCTGCTCAAGGAAAAAGAAGATGCAAAGATAAGGTTACTCTCATACTTACCTTTTTTGCATCTTCCATATCATGTTATTCAAACCAACTGTTTTCATTGATATTTTTCTCAGCGAATGAATCTGTTGTCCCTCAAACATCATAGATTTTTTTTTTACATTTCTTTTAGTGTGTAAGATCAACCCCCCTTCTCACCTTCACAGTTCTCTTGCTGAATTTTTCAATTGCGTCTTTATCTCCTTCCTGCACATTAAAAGTCATTTCTCTGGGGATCAAGGAAGGAAGGAGAACAAGCACAGGACAGAACATAATAGAACATTGTAAATAGCACAACAAACTGTTAGCTCACCTCTACTGCCTCTGTTAGTTCTTTGGTGGCATCCTCCCTCTTCGAGTACCTGCAGAACATGCCATGTTAGAAACAGATCATAGCCCAAAATGGGATATAGGACAAGTTATAAGTAGCAGCAGGAAAAACAATCTAAGGATGAAAGAAACATATCATGCCTTTTTGCGAGCTCTTGTTTCTTCAGATCAGGAGGCTTGCCGTCAAAAACATATCTGCATGAGTGTCACAATTTTAAGTGTATTTATATGGATAATTTCAATAACAACACATGAGGAATTTGGGTTTACACTGGCTTGATTCCTGCCTCCAGCAACCTTATTGTCCGGTTGAACATACCTTGCAAATGACTGCACAGCAAAAAGTTCTAATTTATAAAAGAATTAACAGAATCCTAGCACTAGAAACGGTGTAAGATTAATATTTAGAACCTGGTGACTTCACCGGCCTCGTTCGTGAGGGTTTCCATCCCCGTCCTTCCAACTACAATCTATACAAGTAAAACATAAAAAGCTGTCCCAACTTATAAAGCAGTGGGTAAGGATTTCCTAATACCTCACCAAAACTTGTCAAGCATTTGCACACAGAACATATAGTGAATGTAATATGGAATTGCTATGCTCTACTCCCATTTTTAAAGCAAAACATCCAATGCTAGAGGTGTTTAGTTTAATGTTAATAAATATAGCCGACCAAAGAAGAAAATATGAGGCACAATGGAGGTATCCCAATTTCACCCAACCCGATTTGGTCTAAGAGAGCAATTTGAAATGAGGAATCCTTACAACACTGGGCAGTTAAATAGAAAAAAATACAATCTCTCTCGCGCAATCAAAGGCTTAAGAAACCCTAAACCCCAAGTAAGTGAGCACATTTCAAAGCCAACTCGCAGAATGTGAGAGGAGACATGGGGGCATACGAGGAACTGGTAGATGCTCATGCTGGCGTCGACGGCAATGCGCCGGCCGAAGTAGCTCTCGAACTTCTGCTCCTTCATCGCCTTGGGCGCATTGTCCGCCAAAAGCTTCGTCAAACCCTAACAAAAAAAAACCCGCACAAAATCGAGACGAAAACCCATCACGAATCGGCCGCAAAAACAGCTACAACCCACACCACCGGTCACAAATCCGAACGAGGACGGCGCGGCACCCCCCCCCCCTCCCGCGCTCACCTTGATGCCCATCTCGCCTCCGACGGATGCGGCGAGCGGCGGAGGCGGCGGCGGCGGAGACACAGAGAGAGAGGTCGCGGGCTATTTCGAGTTTT
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| CDS seq | ATGGGCATCAAGGGTTTGACGAAGCTTTTGGCGGACAATGCGCCCAAGGCGATGAAGGAGCAGAAGTTCGAGAGCTACTTCGGCCGGCGCATTGCCGTCGACGCCAGCATGAGCATCTACCAGTTCCTCATTGTAGTTGGAAGGACGGGGATGGAAACCCTCACGAACGAGGCCGGTGAAGTCACCAGTCATTTGCAAGGTATGTTCAACCGGACAATAAGGTTGCTGGAGGCAGGAATCAAGCCAGTATATGTTTTTGACGGCAAGCCTCCTGATCTGAAGAAACAAGAGCTCGCAAAAAGGTACTCGAAGAGGGAGGATGCCACCAAAGAACTAACAGAGGCAGTAGAGGAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGGTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGGGTTCCTGTTGTAGAGGCGCCATGTGAAGCAGAAGCAGAATGTGCTGCACTTTGCATAAATGATATGGTTTATGCAGTTGCATCAGAAGATATGGACTCTCTTACTTTTGGAGCTCCACGGTTTCTTCGTCATTTGATGGATCCAAGTTCCAAGAAAATTCCAGTTATGGAATTTGAAGTCGCGAAAGTTTTGGAGGAGCTTGAACTCACTATGGACCAATTCATTGACTTGTGCATCCTATCTGGATGTGACTATTGTGATAGCATTAAAGGTATTGGAGGTCAAACAGCTCTGAAACTTATTCGTCAACATGGGTCCATAGAAAGCATTCTGGAAAACATAAATAAAGACAGATATCAGATTCCTGAGGACTGGCCTTATCAAGAAGCTCGACGCTTGTTCAAGGAACCCAATGTTACATTGGATATTCCTGAGCTGAAATGGAATGCTCCCGATGAGGAAGGTCTTGTAGAGTTTCTGGTGAAAGAAAATGGTTTCAACCAAGATAGAGTGACAAAGGCCATAGAGAAGATTAAATTTGCCAAGAACAAATCTTCCCAAGGAAGGTGA
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| Protein seq | MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPELKWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGR |
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| Function | Flap endonuclease 1-A [UniProtKB/Swiss-Prot:Q9SXQ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g46270 | LOC_Os05g46270.1 | Chr05 | 26830170 | 26834200 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGCATCAAGGGTTTGACGAAGCTTTTGGCGGACAATGCGCCCAAGGCGATGAAGGAGCAGAAGTTCGAGAGCTACTTCGGCCGGCGCATTGCCGTCGACGCCAGCATGAGCATCTACCAGTTCCTCATTGTAGTTGGAAGGACGGGGATGGAAACCCTCACGAACGAGGCCGGTGAAGTCACCAGTCATTTGCAAGGTATGTTCAACCGGACAATAAGGTTGCTGGAGGCAGGAATCAAGCCAGTATATGTTTTTGACGGCAAGCCTCCTGATCTGAAGAAACAAGAGCTCGCAAAAAGGTACTCGAAGAGGGAGGATGCCACCAAAGAACTAACAGAGGCAGTAGAGGAAGGAGATAAAGACGCAATTGAAAAATTCAGCAAGAGAACTGTGAAGGTCACGAAGCAGCACAATGAAGAATGTAAACGACTATTAAGACTTATGGGGGTTCCTGTTGTAGAGGCGCCATGTGAAGCAGAAGCAGAATGTGCTGCACTTTGCATAAATGATATGGTTTATGCAGTTGCATCAGAAGATATGGACTCTCTTACTTTTGGAGCTCCACGGTTTCTTCGTCATTTGATGGATCCAAGTTCCAAGAAAATTCCAGTTATGGAATTTGAAGTCGCGAAAGTTTTGGAGGAGCTTGAACTCACTATGGACCAATTCATTGACTTGTGCATCCTATCTGGATGTGACTATTGTGATAGCATTAAAGGTATTGGAGGTCAAACAGCTCTGAAACTTATTCGTCAACATGGGTCCATAGAAAGCATTCTGGAAAACATAAATAAAGACAGATATCAGATTCCTGAGGACTGGCCTTATCAAGAAGCTCGACGCTTGTTCAAGGAACCCAATGTTACATTGGATATTCCTGAGCTGAAATGGAATGCTCCCGATGAGGAAGGTCTTGTAGAGTTTCTGGTGAAAGAAAATGGTTTCAACCAAGATAGAGTGACAAAGGCCATAGAGAAGATTAAATTTGCCAAGAACAAATCTTCCCAAGGAAGGTGA
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| Protein seq | MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGEVTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGDKDAIEKFSKRTVKVTKQHNEECKRLLRLMGVPVVEAPCEAEAECAALCINDMVYAVASEDMDSLTFGAPRFLRHLMDPSSKKIPVMEFEVAKVLEELELTMDQFIDLCILSGCDYCDSIKGIGGQTALKLIRQHGSIESILENINKDRYQIPEDWPYQEARRLFKEPNVTLDIPELKWNAPDEEGLVEFLVKENGFNQDRVTKAIEKIKFAKNKSSQGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.339529 | 0.722604 | 1.058162 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0540100 | RBH | 0.660063 | 1.134594 | 5.968879 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0540100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025260 | RBH | 0.148757 | 13.654342 | 5.781059 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025040 | RBH | 0.128789 | 2.098730 | 2.500044 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025050 | RBH | 1.698076 | 8.366786 | 11.805216 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025100 | RBH | 0.296478 | 0.899591 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025080 | RBH | 2.216224 | 17.100189 | 20.046936 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0417000 | RBH | 2.878425 | 4.386779 | 4.190215 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024740 | RBH | 0.000000 | 1.431181 | 1.201799 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0428400 | RBH | 6.116637 | 5.4785635 | 30.8212115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024920 | RBH | 0.115866 | 0.336227 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024800 | RBH | 0.325465 | 19.601505 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024990 | RBH | 1.586351 | 8.475873 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024990 | RBH | 0.493133 | 2.324129 | 1.003481 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025040 | RBH | 0.000000 | 7.093382 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024480 | RBH | 0.0 | 5.486211 | 2.696707 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024900 | RBH | 0.000000 | 13.245915 | 8.625401 |
