Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g41820 | OGI:05066330 | 10/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:24492456-24493152 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TATGCTAGACTAAAAGAAAACCACCTCAATAATATGTCTATATGGGTATCTATAGCTCTCTAATACATTGCCTCGTTTTTCTCTATAGACTATCTACAGGTTAGTAGATAGCTTTACTCTCTTTCTTCATTTAATCTCTTTCATATAGAAAAATATAATGACATGAATCTTTTGTAGAGAGCCTATAGATAATCATTGCGGTTGCTCTAAGGGTTCAATCGCCTTCCTAAAAAAAATTACTCTGCCGCACGAAACGTGGCCACGTAGGTCGATCACCAGTACTTCAGCACCACCAGACGAGGGCCGCGGCCGCCACGGCGGCGGCGCCGCCGGAAGTCCTCCACGCGCCACGGCCATGGGGGCCGGCCGCGGCGGCGCTGTGCCTGTGCGACCCCGAGCCGGCCCTGGAGCCGATGCCGGCGGCCGCCGCGCCGGCGATCGGGCGGCCCGCGCCACCTCTCCCGCCCCCTCCCTTCCCGCCTCCTCCTCCTCCTCCTTTTCCTCCCCTCCCGCCGCCGCGGCACAGGGCGCCCTCGAACTGCGCCGCCACGCAGAGCGCCGCCAGCAGCAGCGCGCAGATGGCCCACCTCCCGCCTCCCCTCATCGCCGCCGCCGCCTCTCTCCTCGACCGCCGCCGTTGGTCTGACTCCTGCTCGTACCGAAGGAATGGGAAGGCCAAGAGAGAGAGGAAAGTTGG
More
|
||||||||||
| CDS seq | ATGAGGGGAGGCGGGAGGTGGGCCATCTGCGCGCTGCTGCTGGCGGCGCTCTGCGTGGCGGCGCAGTTCGAGGGCGCCCTGTGCCGCGGCGGCGGGAGGGGAGGAAAAGGAGGAGGAGGAGGAGGCGGGAAGGGAGGGGGCGGGAGAGGTGGCGCGGGCCGCCCGATCGCCGGCGCGGCGGCCGCCGGCATCGGCTCCAGGGCCGGCTCGGGGTCGCACAGGCACAGCGCCGCCGCGGCCGGCCCCCATGGCCGTGGCGCGTGGAGGACTTCCGGCGGCGCCGCCGCCGTGGCGGCCGCGGCCCTCGTCTGGTGGTGCTGA |
||||||||||
| Protein seq | MRGGGRWAICALLLAALCVAAQFEGALCRGGGRGGKGGGGGGGKGGGGRGGAGRPIAGAAAAGIGSRAGSGSHRHSAAAAGPHGRGAWRTSGGAAAVAAAALVWWC |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g41820 | LOC_Os05g41820.1 | Chr05 | 24492456 | 24493152 | - | MSU_osa1r7 | ||
| CDS seq | ATGAGGGGAGGCGGGAGGTGGGCCATCTGCGCGCTGCTGCTGGCGGCGCTCTGCGTGGCGGCGCAGTTCGAGGGCGCCCTGTGCCGCGGCGGCGGGAGGGGAGGAAAAGGAGGAGGAGGAGGAGGCGGGAAGGGAGGGGGCGGGAGAGGTGGCGCGGGCCGCCCGATCGCCGGCGCGGCGGCCGCCGGCATCGGCTCCAGGGCCGGCTCGGGGTCGCACAGGCACAGCGCCGCCGCGGCCGGCCCCCATGGCCGTGGCGCGTGGAGGACTTCCGGCGGCGCCGCCGCCGTGGCGGCCGCGGCCCTCGTCTGGTGGTGCTGA
More
|
|||||||
| Protein seq | MRGGGRWAICALLLAALCVAAQFEGALCRGGGRGGKGGGGGGGKGGGGRGGAGRPIAGAAAAGIGSRAGSGSHRHSAAAAGPHGRGAWRTSGGAAAVAAAALVWWC |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.160794 | 0.240805 | 0.129164 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0022210 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0022270 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0021860 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0388700 | RBH | 1.1428695 | 1.360012 | 1.2528375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0022040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0022230 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0022210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G021650 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022060 | RBH | 0.0 | 0.0 | 0.0 |
