Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g40960 | OGI:05065080 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:24015243-24017576 | ||||||||
| Gene Symbol | DLN147, OsDLN147, OsDLN147a, OsDLN147b, DLN147a, DLN147b | ||||||||||
| DNA seq | GCAATAGCTTGTTCATACATCATTGAATTATTTATAACCTATGGTACAACTCTAGATAGCTACAATCTTTCCCGGCCTACATAATGTATTTACAGAATTAAAGTAGTTATAACTTTGGAAGAAATTATTTGTAAGCTCATTTCTTCTCCTTGATTGTATTACATATTGTCAGCTAATCAACTCCAGCTGAAGCCGTTCAAGTCAAAATGTCTATAACCTTGATCGTTATCATCTATATTGTGAGTATTTAGATCAAGATTCTTCCCTGAACTTTGTTGATCAAAATCTAGTAGCTTGCTTTCTCTTTGATAGTCAACTGTTTGTCTTTTGCAGCTTGGTTCATCAAGATATAGCTTCTCTACATTTATTTCTTTGCTTCCTGATGTTGAACTGGTTGTGCTGCCTCCGCCATTCTTTTGAGGCGTGATATACTCATGTAGAACCTCTGTATCACTGTCACTTCCCTCTGATTTGTGATACTGTTTACCGCTATACAGATGACCCATTCTACGCTCACTTAAGCTTCTGTTAAGGGAATATTGAGATTCTTGATCTTGGGACTGTTTTCGGCAAAATAATGTACTATCATCATATGCTTTGAGTACCCCGTGGTTTTGTAGCCTATGCTCCTTGAATCCTTCAGCTGCAGTCAAACAGTTATTGGCTGAACTTTCAACAAACTGGATTTGCCTTGGCTCTAGTCTGTGTATACTTGAACTTTCTCTTATTTCTGTAACTGCGTTGCTGAGACATTCATTTGAAACTTGTGAGACCAGTTCTGATATTTTTATTTTTGCATCTTCCAGGCTTGCAGGGCCCAAGTTCTGCTTCCCAAGGGTCTCTTGAGCTTGCTCAAGAACTGCCTGCAGATACTTCCCTTGGGCTTCTATCCGCAGCTGTAGATGCCGTTGTACCTGATACCAAATTAGCTTCAGGTTAGAACCATTGAGCCAATTCATATTGTTGATACTATATGCATTATATTAATCTTAGCTGTTTTCTAAAAATAGTTTGCTGCCAAACTGGAGGAGAGTATCCAAGTTCTCTAATCTTTACATAATACTGTCTATTCTATTGTACAATGATTTGAGAATATAGTTAGAAAATAGTGTTATGAAAGGAATTTTTGGGGTAGATCTACCCGATCAATTACATATGTCCAATCTTATTCATAAAGATACTGGTACCGAATTCTAAAGGTTTGGCTGGATGTATTCTGAACATCGCTTAACTTTTACTAGAGGGAGAAAGTTATCTTGGGGGTCATTCCTGGTGGGAATCACTGTTGTGAAGGATACAAAAAAGATGATACAGCATTCATAGCAGTTTTCTTATGCTCTTAGTTGGTATGTGGGCATGCTGACTGGATGCTCGAATTTTTTTTTATCTTATGTCATGTCCATCTACTCTATGGGCCTATCGTGGGTTAAGATCTTATTATGCAAACAGGGTCAGTACCTCACCTCAAGTTGTTCATTTAGCTGCCTCTGCACCTCAATTTGCATCTGTAGTGCTTCACCGATTTGAATAGTTCTTGCACCCAATAAAAGGGACTATTACTTCACTATTCAGATGGATTACAATTATAAAGTACATGGGAAATTTCTTACTTCTCTGCCTGTGGAATGGCGCTTGCACTGGCCATCGCTAATGCACTTGTTCCAGGAATCCTATCAGCAACACCTGTACATCCAAGGGCTGCAAATTGTCATCATCCATGAGTTGCTATGTGGCTATTGTAGTGGTAACAATGGAAATTAAACTTGTTTTTACCATTCTTTGTTGTCCCAACATTAGCTTGACCTTGGAGATTCTTACTGAGCCTGTATTTCTGAAACATTCAAGAAATTATGAATTGCACTGAAATTTTTTAGTACTATTTTAAATGGGAGATTCCTGGTTGTCAGGTACCTGGAGATGGCTTTTCAGATGGTATAAGGTGAGTCCTGGAATGCCCATGAGCCTCATGACTGTTTTTGGAGTAGCTTCTGAGTGATTAAAATGAATGTTAGAACTCAGCTATTCTAGTGCATTGAGAAGATAAGAATCTTATACTTACTCTCTGCTCCACCTAATTGATTAACTGCATCTACAAATCGCTGATGCAACTCAGGTGTCCATTTCAACCTAGGTTTAGCGTCAGTTGAGAGAACCAGCCCAGAATCTCCTTGTGTATTTCCTCCATGCAGAAACAGATGCCGCTCCATTGGAAAGGATGTCCTAGTAGTGAAGAGGTCACTCCGACCCTGATGTTGGTGATACATCTGCTGCAAAATTAATACACACTTTTAGAAGAATGGAAACATAAAGAGGCAAGCATTTACACTATCCTTT
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| CDS seq | ATGTATCACCAACATCAGGGTCGGAGTGACCTCTTCACTACTAGGACATCCTTTCCAATGGAGCGGCATCTGTTTCTGCATGGAGGAAATACACAAGGAGATTCTGGGCTGGTTCTCTCAACTGACGCTAAACCTAGGTTGAAATGGACACCTGAGTTGCATCAGCGATTTGTAGATGCAGTTAATCAATTAGGTGGAGCAGAGAAAGCTACTCCAAAAACAGTCATGAGGCTCATGGGCATTCCAGGACTCACCTTATACCATCTGAAAAGCCATCTCCAGAAATACAGGCTCAGTAAGAATCTCCAAGGTCAAGCTAATGTTGGGACAACAAAGAATGCCCTTGGATGTACAGGTGTTGCTGATAGGATTCCTGGAACAAGTGCATTAGCGATGGCCAGTGCAAGCGCCATTCCACAGGCAGAGAAAACTATTCAAATCGGTGAAGCACTACAGATGCAAATTGAGGTGCAGAGGCAGCTAAATGAACAACTTGAGGTACAACGGCATCTACAGCTGCGGATAGAAGCCCAAGGGAAGTATCTGCAGGCAGTTCTTGAGCAAGCTCAAGAGACCCTTGGGAAGCAGAACTTGGGCCCTGCAAGCCTGGAAGATGCAAAAATAAAAATATCAGAACTGGTCTCACAAGTTTCAAATGAATGTCTCAGCAACGCAGTTACAGAAATAAGAGAAAGTTCAAGTATACACAGACTAGAGCCAAGGCAAATCCAGTTTGTTGAAAGTTCAGCCAATAACTGTTTGACTGCAGCTGAAGGATTCAAGGAGCATAGGCTACAAAACCACGGGGTACTCAAAGCATATGATGATAGTACATTATTTTGCCGAAAACAGTCCCAAGATCAAGAATCTCAATATTCCCTTAACAGAAGCTTAAGTGAGCGTAGAATGGGTCATCTGTATAGCGGTAAACAGTATCACAAATCAGAGGGAAGTGACAGTGATACAGAGGTTCTACATGAGTATATCACGCCTCAAAAGAATGGCGGAGGCAGCACAACCAGTTCAACATCAGGAAGCAAAGAAATAAATGTAGAGAAGCTATATCTTGATGAACCAAGCTGCAAAAGACAAACAGTTGACTATCAAAGAGAAAGCAAGCTACTAGATTTTGATCAACAAAGTTCAGGGAAGAATCTTGATCTAAATACTCACAATATAGATGATAACGATCAAGGTTATAGACATTTTGACTTGAACGGCTTCAGCTGGAGTTGA
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| Protein seq | MYHQHQGRSDLFTTRTSFPMERHLFLHGGNTQGDSGLVLSTDAKPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRLSKNLQGQANVGTTKNALGCTGVADRIPGTSALAMASASAIPQAEKTIQIGEALQMQIEVQRQLNEQLEVQRHLQLRIEAQGKYLQAVLEQAQETLGKQNLGPASLEDAKIKISELVSQVSNECLSNAVTEIRESSSIHRLEPRQIQFVESSANNCLTAAEGFKEHRLQNHGVLKAYDDSTLFCRKQSQDQESQYSLNRSLSERRMGHLYSGKQYHKSEGSDSDTEVLHEYITPQKNGGGSTTSSTSGSKEINVEKLYLDEPSCKRQTVDYQRESKLLDFDQQSSGKNLDLNTHNIDDNDQGYRHFDLNGFSWS |
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| Function | Myb-related protein 1 [UniProtKB/Swiss-Prot:Q9FK47] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g40960 | LOC_Os05g40960.1 | Chr05 | 24015243 | 24017576 | - | MSU_osa1r7 | ||
| CDS seq | ATGTATCACCAACATCAGGGTCGGAGTGACCTCTTCACTACTAGGACATCCTTTCCAATGGAGCGGCATCTGTTTCTGCATGGAGGAAATACACAAGGAGATTCTGGGCTGGTTCTCTCAACTGACGCTAAACCTAGGTTGAAATGGACACCTGAGTTGCATCAGCGATTTGTAGATGCAGTTAATCAATTAGGTGGAGCAGAGAAAGCTACTCCAAAAACAGTCATGAGGCTCATGGGCATTCCAGGACTCACCTTATACCATCTGAAAAGCCATCTCCAGAAATACAGGCTCAGTAAGAATCTCCAAGGTCAAGCTAATGTTGGGACAACAAAGAATGCCCTTGGATGTACAGGTGTTGCTGATAGGATTCCTGGAACAAGTGCATTAGCGATGGCCAGTGCAAGCGCCATTCCACAGGCAGAGAAAACTATTCAAATCGGTGAAGCACTACAGATGCAAATTGAGGTGCAGAGGCAGCTAAATGAACAACTTGAGGTACAACGGCATCTACAGCTGCGGATAGAAGCCCAAGGGAAGTATCTGCAGGCAGTTCTTGAGCAAGCTCAAGAGACCCTTGGGAAGCAGAACTTGGGCCCTGCAAGCCTGGAAGATGCAAAAATAAAAATATCAGAACTGGTCTCACAAGTTTCAAATGAATGTCTCAGCAACGCAGTTACAGAAATAAGAGAAAGTTCAAGTATACACAGACTAGAGCCAAGGCAAATCCAGTTTGTTGAAAGTTCAGCCAATAACTGTTTGACTGCAGCTGAAGGATTCAAGGAGCATAGGCTACAAAACCACGGGGTACTCAAAGCATATGATGATAGTACATTATTTTGCCGAAAACAGTCCCAAGATCAAGAATCTCAATATTCCCTTAACAGAAGCTTAAGTGAGCGTAGAATGGGTCATCTGTATAGCGGTAAACAGTATCACAAATCAGAGGGAAGTGACAGTGATACAGAGGTTCTACATGAGTATATCACGCCTCAAAAGAATGGCGGAGGCAGCACAACCAGTTCAACATCAGGAAGCAAAGAAATAAATGTAGAGAAGCTATATCTTGATGAACCAAGCTGCAAAAGACAAACAGTTGACTATCAAAGAGAAAGCAAGCTACTAGATTTTGATCAACAAAGTTCAGGGAAGAATCTTGATCTAAATACTCACAATATAGATGATAACGATCAAGGTTATAGACATTTTGACTTGAACGGCTTCAGCTGGAGTTGA
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| Protein seq | MYHQHQGRSDLFTTRTSFPMERHLFLHGGNTQGDSGLVLSTDAKPRLKWTPELHQRFVDAVNQLGGAEKATPKTVMRLMGIPGLTLYHLKSHLQKYRLSKNLQGQANVGTTKNALGCTGVADRIPGTSALAMASASAIPQAEKTIQIGEALQMQIEVQRQLNEQLEVQRHLQLRIEAQGKYLQAVLEQAQETLGKQNLGPASLEDAKIKISELVSQVSNECLSNAVTEIRESSSIHRLEPRQIQFVESSANNCLTAAEGFKEHRLQNHGVLKAYDDSTLFCRKQSQDQESQYSLNRSLSERRMGHLYSGKQYHKSEGSDSDTEVLHEYITPQKNGGGSTTSSTSGSKEINVEKLYLDEPSCKRQTVDYQRESKLLDFDQQSSGKNLDLNTHNIDDNDQGYRHFDLNGFSWS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.777241 | 1.898585 | 0.074068 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0488600 | RBH | 1.149337 | 2.822825 | 0.287732 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0488600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0021580 | RBH | 0.059973 | 0.000000 | 0.816807 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021540 | RBH | 0.438572 | 0.000000 | 0.430555 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0021460 | RBH | 0.194023 | 3.008718 | 1.541019 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0021470 | RBH | 0.0 | 0.136636 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0021580 | RBH | 2.274400 | 0.0 | 3.959361 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0371900 | RBH | 4.9779855 | 4.4505925 | 1.948417 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0021130 | RBH | 0.367225 | 0.0 | 0.763378 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0381600 | RBH | 3.5623565 | 1.4150175 | 1.1881835 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0021430 | RBH | 0.612805 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0021350 | RBH | 0.415777 | 3.057731 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0021460 | RBH | 5.804794 | 10.411734 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0021530 | RBH | 0.248752 | 0.322169 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0021510 | RBH | 0.612698 | 2.057995 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020960 | RBH | 0.101035 | 0.149795 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0021390 | RBH | 1.699265 | 0.000000 | 4.601835 |
