Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g39500 | OGI:05063080 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:23178205-23178921 | ||||||||
| Gene Symbol | G1L8, OsG1L8 | ||||||||||
| DNA seq | ATGGAGGGAGGAGGAGGTGGGGCGGACGGGCAGGCGCAGCCGGTGGCGCAGGCGCCGCCGGCGATGCAGCCGATGCAGCAGCTGAGCAGGTACGAGTCGCAGAAGAGGAGGGACTGGAACACGTTCCTGCAGTACCTGAAGAACCACCGGCCGCCGCTGACGCTGGCGAGGTGCAGCGGCGCGCACGTCATCGAGTTCCTCAAGTACCTGGATCAGTTCGGGAAGACGAAGGTGCACGCGTCGGGGTGCGCCTACTACGGCCAGCCGAGCCCGCCGGCGCCGTGCCCGTGCCCGCTGCGCCAGGCGTGGGGGTCCCTCGACGCGCTCATCGGGCGCCTCCGCGCCGCCTACGAGGAGAGCGGCCACGCGCCGGAGTCCAACCCCTTCGCCGCGCGCGCCGTCCGGATCTACCTCCGCGAGGTCCGCGACGCGCAGGCCAAGGCCCGCGGGATACCATACGAGAAGAAGAAGCGCAAGCGCACGCAGCAGCAGCAGCCTCCCCCACCGCCGCCGCCGCCGCCCCAGCACCAGCCGGGCGCCGCCGCCGGGGAGGCGTCGAGCTCGTCGTCTGCTGCCGCCGCCGCCGTCGCAGCAGAAGGCAGTGGCAGCTCCGCCGCCGCCGCCGCCGCCACTAGCCAGACAGGAGGAGGAGGAGGAGGAAGCACCACCACCACCACCGCTTCTGCTGCTGCACCGACCACCGCCACCCGAGTATAG
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| CDS seq | ATGGAGGGAGGAGGAGGTGGGGCGGACGGGCAGGCGCAGCCGGTGGCGCAGGCGCCGCCGGCGATGCAGCCGATGCAGCAGCTGAGCAGGTACGAGTCGCAGAAGAGGAGGGACTGGAACACGTTCCTGCAGTACCTGAAGAACCACCGGCCGCCGCTGACGCTGGCGAGGTGCAGCGGCGCGCACGTCATCGAGTTCCTCAAGTACCTGGATCAGTTCGGGAAGACGAAGGTGCACGCGTCGGGGTGCGCCTACTACGGCCAGCCGAGCCCGCCGGCGCCGTGCCCGTGCCCGCTGCGCCAGGCGTGGGGGTCCCTCGACGCGCTCATCGGGCGCCTCCGCGCCGCCTACGAGGAGAGCGGCCACGCGCCGGAGTCCAACCCCTTCGCCGCGCGCGCCGTCCGGATCTACCTCCGCGAGGTCCGCGACGCGCAGGCCAAGGCCCGCGGGATACCATACGAGAAGAAGAAGCGCAAGCGCACGCAGCAGCAGCAGCCTCCCCCACCGCCGCCGCCGCCGCCCCAGCACCAGCCGGGCGCCGCCGCCGGGGAGGCGTCGAGCTCGTCGTCTGCTGCCGCCGCCGCCGTCGCAGCAGAAGGCAGTGGCAGCTCCGCCGCCGCCGCCGCCGCCACTAGCCAGACAGGAGGAGGAGGAGGAGGAAGCACCACCACCACCACCGCTTCTGCTGCTGCACCGACCACCGCCACCCGAGTATAG
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| Protein seq | MEGGGGGADGQAQPVAQAPPAMQPMQQLSRYESQKRRDWNTFLQYLKNHRPPLTLARCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDAQAKARGIPYEKKKRKRTQQQQPPPPPPPPPQHQPGAAAGEASSSSSAAAAAVAAEGSGSSAAAAAATSQTGGGGGGSTTTTTASAAAPTTATRV |
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| Function | Protein G1-like8 [UniProtKB/Swiss-Prot:Q6ATW6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g39500 | LOC_Os05g39500.1 | Chr05 | 23178205 | 23178921 | + | MSU_osa1r7 | ||
| CDS seq | ATGGAGGGAGGAGGAGGTGGGGCGGACGGGCAGGCGCAGCCGGTGGCGCAGGCGCCGCCGGCGATGCAGCCGATGCAGCAGCTGAGCAGGTACGAGTCGCAGAAGAGGAGGGACTGGAACACGTTCCTGCAGTACCTGAAGAACCACCGGCCGCCGCTGACGCTGGCGAGGTGCAGCGGCGCGCACGTCATCGAGTTCCTCAAGTACCTGGATCAGTTCGGGAAGACGAAGGTGCACGCGTCGGGGTGCGCCTACTACGGCCAGCCGAGCCCGCCGGCGCCGTGCCCGTGCCCGCTGCGCCAGGCGTGGGGGTCCCTCGACGCGCTCATCGGGCGCCTCCGCGCCGCCTACGAGGAGAGCGGCCACGCGCCGGAGTCCAACCCCTTCGCCGCGCGCGCCGTCCGGATCTACCTCCGCGAGGTCCGCGACGCGCAGGCCAAGGCCCGCGGGATACCATACGAGAAGAAGAAGCGCAAGCGCACGCAGCAGCAGCAGCCTCCCCCACCGCCGCCGCCGCCGCCCCAGCACCAGCCGGGCGCCGCCGCCGGGGAGGCGTCGAGCTCGTCGTCTGCTGCCGCCGCCGCCGTCGCAGCAGAAGGCAGTGGCAGCTCCGCCGCCGCCGCCGCCGCCACTAGCCAGACAGGAGGAGGAGGAGGAGGAAGCACCACCACCACCACCGCTTCTGCTGCTGCACCGACCACCGCCACCCGAGTATAG
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| Protein seq | MEGGGGGADGQAQPVAQAPPAMQPMQQLSRYESQKRRDWNTFLQYLKNHRPPLTLARCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDAQAKARGIPYEKKKRKRTQQQQPPPPPPPPPQHQPGAAAGEASSSSSAAAAAVAAEGSGSSAAAAAATSQTGGGGGGSTTTTTASAAAPTTATRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0472000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g61310 | RBH | 0.0 | 0.0 | 0.124969 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0472000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020500 | RBH | 0.0 | 12.670952 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020450 | RBH | 0.0 | 3.481485 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020330 | RBH | 0.0 | 3.696307 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020330 | RBH | 0.0 | 0.028876 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020450 | RBH | 0.0 | 0.0 | 1.570494 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0359300 | RBH | 2.2932395 | 16.3181735 | 0.808878 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020050 | RBH | 0.0 | 0.096634 | 0.169473 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0369100 | RBH | 2.674604 | 13.277005 | 0.3857525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020280 | RBH | 0.0 | 0.170719 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020270 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020330 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020410 | RBH | 0.0 | 0.331565 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020420 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G019890 | RBH | 0.0 | 0.0 | 0.256211 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020320 | RBH | 0.0 | 0.0 | 0.0 |
