Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os05g38260 OGI:05061010 | 3/16 Nipponbare | IRGSP 1.0 | MSU Chr05:22430406-22435175
Gene Symbol -
DNA seq

TCAAGGTTGAAAATTTGGAAACACAGCTTGAATGTATGATGCGTCCTCCCAGGTAGCGTCTGCAGGAGTTAAATTCTCCCAAAGAATCAGCCACTGTATCACAGGTTCATTATGCCTGGGAACCATTCTTCTTTGTAAGATAGCAGCTGGTTCAGTCTTGATTTGGCCATCAGGTCCTACTGCAGGTAAATTGGGCATTGGTATAGCTCTAGGCCCCAAATGTTTCTTCAGCTGGCTTACATGAAAAACAGGATGAATCCCAGCTCCCTCCGGCAACTGCAACTTGTAAGCTACTGAACCCATCTTCTCAATGACCTTGAATGGTCCATAAAATTTGGACCTGAGCTTCAATGAGCCCCTGATTCCCATAGCCACTTGTCTGTATGGTTGTAGTTTCAAATACACCATATCCCCCACTTCTAAGGTTCTTTCAGTTCTCCCCTTGTCAGCATAAAACTTCATCCTTCTCTGGGCCTCTCCCATACTGCCCTTCAACTTCTGCAGGATCATTGCTTTATCTTCTAAAGTTACTCTGGCTTCTTCAGAAATATTGCAGGGAATAGAAAACTCACTAATTTGTGGAGGGGGATACCCATACAGAGCTTGAAATGGAGTCATTTGGATGGATGTATGATATGTAGTGTTATACCACCATTCTGCCAATGCAAGCCAAGAAAACCATTTCTGTGGTTCCTGAAAGGTCATGCTGCGCAAATAAGATTCAAGGCATTGATTTACCCTCTCTGTTTGCCCATCTGTCTGAGGGTGATGTGCAGTGCTAAATCTGAGCTTAACCTTATGTATTTTAAAAATCTCCTGGAAAAATGTACTGGTAAATACCCGATCTCTATCAGTAACTATGGCGATAGGCATTCCATGCAGTTTATGTATGTTATCCATAAATATCTGTACCACCTGCTCCACAGTATAAGGATGAGACAATGCTAAGAAATGTGTATATTTTGTTAACCTGTCAACCACCACCAAGATAACATCCTTCCCCTGAGATTTTGGTAGTCCCTCAATAAAGTCCATGGAAATATGAGCCCATGCCATATCAGGTATTTCTAGAGGATTAAGTAACCCTGGAATGTGAACATGTTCTGCCTTAGTAACCTGACAAGTGGGGCACTCCCTGATATAATGCTCTACTTGCCTCTTCAGACTAGGCCAATAAAACAGCTGCTTAATTCTATGATATGTTGCCCTGATCCTAGAATGTCCTCCAAAACATGAGGTGTGGTAGACTTCCAGCAGCAGTTGTCTAATCTCAGTTGTTTCCCCAACATAGATCCTGCCCTTGAATTTCAACAATCCAGATTCACACTTATAGTTTCGTTCTGGATCACCATCAGTATCAATCAGGCTTAAAATCTTGTGTGCCAAAACATCCTCTTCATAACTCCTCTTAATATCTTGTACCTAATCAGGAACAACTACTGTCATGGGTAAACATTGTTCTTCCTTCAAGTTAGGACTTCTAGAAAGAGCATCAGCCACCAAATTCTCTTTTCCAGATTTGTATTCAATTACATAATCAAACTCCATTAATTTCAACAACAGTTTGTGTTGGATCCCTTCTACTAGTCTCTGACTCATCATGAATTTAAGACTCTGTTGATCAGTCTTGATGATTAATTTTCCTCCCAACACATAATGTCTCCACCTTTTAAGAGCTTCCAAAATTGCCATAGCCTCCTTTTCATAAACTGACTGTGCAGCTGCTTTAGGTCCCAGAGGTTTACTGAAGTAAGCTATTGGTTTTCCCATCTGCATTAATACTGCTCCAATCCCTACTCCACAGGCATCAGCCTCAATTACAAATGGTTAACTGAAATCAGGTAGAGCCAATACTAGGCTAGTACACATCCTTTCTTTCAATAATTCAAAAGCCTTCCTTTGTGGTGCACCCCACTTAAAACCATCTTTTTTAAGCATATCATGTAGGGGTCTGCAAATCACTCCATACCCCTTAATAAACCTCCTGTAGTACCCAGTCATCTCCAAGAATTCCCTTACTTCAGTCACATTTCTAGGAGCTTTCCTATTTTTGATCGCACAGATCTTTTTGGGATCTGTGGACACTCCATCTTCTGAGATAATGTGTCCCAGGTAGTTCACCCTGTCCAGCCCAAAATCACACTTCTTCAGCCTCACCACCAGTTGGTTTGCTGCCAATGCTTGCATCACCAACTTTATATGCTCCAGATGTTCAGACTGATTTTTGCTATAAATCAATATATCATCAAAGAAAACGAGCACAAACTTCCTGAGAAAAGGAGCCAAAACCTGGTTCATTAAAGCCTGAAAAGTAGCTGGAGCATTGGTCAAGCCAAATGACATAACATTATACTCATAGTGACCTAGGTGAATTCTGAATGCAGTTTTTGGAATATCTCTCTCAGCCATTCTAATCTGATGATAACCTGACCTCAAGTCTAACTTCGAAAATATTTTAGCCCCATGTAACTCATCCAATAGATCTTCAATTATTGGCATAGGAAATTTGTTCTGGACAGTCTGAGAATTCAACTGCCTATAATCCACACACATCCTCCAGGATCCATCTTTTTTCCTAACCATGACAGCAGGTGAGGCATAAGGGCTGTCACTAGTCCTAATCTCTTCTGTTTTGATCAACTCAGTGATGATATCTTCCATTGCCTCCTTTTGGTAATGTGGGACCCTATATGGTCTGAGATTAGGTGGTTCTGATCCTGCTTTTAGATTAATAGTGTGATCACATTCTCTCCTAGGAGGTAATCCCTTCGGCTCAATAAGCACATCTGGGAATTGTTGCAAGATTTTCTGGATATTTTCAGGAATCTTTGCCTTCTCTTCCACATCTTCACTAATGGCATTTATCTATATGATGCAGCCCAATGCACCTTTTTTAACCATCTTCCCCATTTGTTTGTTGCTGACCTGAAAATATTTTCCAGGCTTGGTGAAATCTTGAATTTCCATCACTTTTCCTCCTTTAGTCACCCTCATCTCTCTTTTCTTGAGATCTAAAGAAATTGGGCTGTACTTGTATATCCAGTCAGCTCCTAGTATGATATCATACTTCTGTAAAGGCAATAGACTGAATGCATTGGTGAAAATTTCCCCTTGAATCTCATAGTCCATCTCTGGCACCTGTAATTCTGACTTTAACTCCCCTCCTCCAGCTACTATCACTTTCTTTATCTTAGTATTCATCAAATGACATTGGCTCTTTAAGGCAAATTTGTGATCCATGAATGTCCCAGTACTTCCACTGTCAATCAATCGTACTGCTTTCCTCCCATTCACCTTCAGCAAAACAGAAAAAGTATCAGGTCGGTCAAAACCATATACAACACTCTGGGATATACTCAGCAGCTCTTCTGCCTTCTCTTCCTTCTTCTCTTCCTGTTCAGCTTCAATGGGCTGCTCCTCTTCTTCCATTTCTTCCCCCAACTCTTCAGTCTCATCACATTCCATCAGTAAGGCATGTATAGCTTGTTTCACCTTACATTGATGCCTTGGAAACCATGGCTCCTTACAAAACCAGCATTTCTTCTCCTCCTTCTTGTCACCATCCATCCTTGGTGGTCCTTTGTTTACCACATTCTTAACTTGATTTCCCCCATTTGGAGGTCTGTTTCTATTGAAATTATTAGCAGCCTTCCTGGAATTTGCAGCCTTCTCATATGTTTTAGCATACCAGTAAGATTCCAACAGACCCTGTGGCTTCTGCCCACAAACATCATGCTTAATTTCTCCTCTGAGGCCCCCAATAAAGCAACTAGTGAAATACTGCTCTTGCAAGTATGGATGGTCCCTCCTAACCAGATCCATATAGTCTTCAAACTTATCAATATACTACTCTACTGTCAATCCATACTGCTTAACATTCTGGAATAATTCTACAGCTTCATGCACATTTGCAGTAGAGAACCTGGTACATAACATAGCACACCATTGTGGCCAGGTAATCACTTGCCATGGCAATCCTATACCCCTGAACCATTTGGCTGCCCTTCCATATAGATGAGCCACTGCTAGGTTGACCCATTGATCCACTGGAGTTCCAGTGATCTCAAAGAATTTCTCACACTGTTTTAGCCAGTCTACAGGATCTTCACCAGTAAATAAAGAGATTTCCAATCTAGGACCCTTGATTACAGCCTCAGCATAATGATTCCCTCCACTAGTAGGTGCCCCAAAGCAACTCCTCTGTGGATCAACAAAGTGAATTCCCTGATTCCATTGGTTAGGTCCCCTATTAAATCCAGCTTGGAAATTGGGAATACCTCCCTGATATCCCCCATGATTTATAGGAGCTCCAAAAACAGAACCTCCCATTCTACCAGTAAAATTCTCTCCTTGAGTAAACACAGTTGGCTCAGGTCGAGTGGTGTCAACACCTGGGCCACTACTGCCCCCCATTTGACAAAACAGACTCTTCTGATTCATTGGTGCAGAGGGTATCACAACGTTGGGTTCGATTTCAAAACGTACCTCAGGTGCAGTGGAGGGAAAAACCACTCCAGTACTCGGCCCAGCAGCGTCAGTACCCTGTCCCGTTGATCCCTTAACTGCTGTAGTAGCATCTGCTCCTTCTCCACCCTGATCTGCCATTTTCTTTTGCTTACAGAGTTCACGCAGCAGCTCTTTGATTTCCTTGACCTCCCCCTTGAGCGATTTCAGATTTGTTACCTCCTTTTTCAGGGTCACCATGTCAGTCCTGAACTCGTTCATCTCTTCCAAATCCACCATCGATTCGCTGGAGCGCGTCTTCGTCAT

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CDS seq

ATGACGAAGACGCGCTCCAGCGAATCGATGGTGGATTTGGAAGAGATGAACGAGTTCAGGACTGACATGGTGACCCTGAAAAAGGAGGTAACAAATCTGAAATCGCTCAAGGGGGAGGTCAAGGAAATCAAAGAGCTGCTGCGTGAACTCTGTAAGCAAAAGAAAATGGCAGATCAGGGTGGAGAAGGAGCAGATGCTACTACAGCAGTTAAGGGATCAACGGGACAGGGTACTGACGCTGCTGGGCCGAGTACTGGAGTGGTTTTTCCCTCCACTGCACCTGAGGTACGTTTTGAAATCGAACCCAACGTTGTGATACCCTCTGCACCAATGAATCAGAAGAGTCTGTTTTGTCAAATGGGGGGCAGTAGTGGCCCAGGTGTTGACACCACTCGACCTGAGCCAACTGTGTTTACTCAAGGAGAGAATTTTACTGGTAGAATGGGAGGTTCTGTTTTTGGAGCTCCTATAAATCATGGGGGATATCAGGGAGGTATTCCCAATTTCCAAGCTGGATTTAATAGGGGACCTAACCAATGGAATCAGGGAATTCACTTTGTTGATCCACAGAGGAGTTGCTTTGGGGCACCTACTAGTGGAGGGAATCATTATGCTGAGGCTGTAATCAAGGGTCCTAGATTGGAAATCTCTTTATTTACTGGTGAAGATCCTGTAGACTGGCTAAAACAGTGTGAGAAATTCTTTGAGATCACTGGAACTCCAGTGGATCAATGGGTCAACCTAGCAGTGGCTCATCTATATGGAAGGGCAGCCAAATGGTTCAGGGGTATAGGATTGCCATGGCAAGTGATTACCTGGCCACAATGGAGGGACCATCCATACTTGCAAGAGCAGTATTTCACTAGTTGCTTTATTGGGGGCCTCAGAGGAGAAATTAAGCATGATGTTTGTGGGCAGAAGCCACAGGGTCTGTTGGAATCTTACTGGTATGCTAAAACATATGAGAAGGCTGCAAATTCCAGGAAGGCTGCTAATAATTTCAATAGAAACAGACCTCCAAATGGGGGAAATCAAGTTAAGAATGTGGTAAACAAAGGACCACCAAGGATGGATGGTGACAAGAAGGAGGAGAAGAAATGCTGGTTTTGTAAGGAGCCATGGTTTCCAAGGCATCAATGTAAGGTGAAACAAGCTATACATGCCTTACTGATGGAATGTGATGAGACTGAAGAGTTGGGGGAAGAAATGGAAGAAGAGGAGCAGCCCATTGAAGCTGAACAGGAAGAGAAGAAGGAAGAGAAGGCAGAAGAGCTGCTGAGTATATCCCAGAGTGTTGTATATGGTTTTGACCGACCTGATACTTTTTCTGTTTTGCTGAAGGTGAATGGGAGGAAAGCAGTACGATTGATTGACAGTGGAAGTACTGGGACATTCATGGATCACAAATTTGCCTTAAAGAGCCAATGTCATTTGATGAATACTAAGATAAAGAAAGTGATAGTAGCTGGAGGAGGGGAGTTAAAGTCAGAATTACAGGTGCCAGAGATGGACTATGAGATTCAAGGGGAAATTTTCACCAATGCATTCAGTCTATTGCCTTTACAGAAGTATGATATCATACTAGGAGCTGACTGGATATACAAGTACAGCCCAATTTCTTTAGATCTCAAGAAAAGAGAGATGAGGGTGACTAAAGGAGGAAAAGTGATGGAAATTCAAGATTTCACCAAGCCTGGAAAATATTTTCAGATAAATGCCATTAGTGAAGATGTGGAAGAGAAGGCAAAGATTCCTGAAAATATCCAGAAAATCTTGCAACAATTCCCAGATGTGCTTATTGAGCCGAAGGGATTACCTCCTAGGAGAGAATGTGATCACACTATTAATCTAAAAGCAGGATCAGAACCACCTAATCTCAGACCATATAGGGTCCCACATTACCAAAAGGAGGCAATGGAAGATATCATCACTGAGTTGATCAAAACAGAAGAGATTAGGACTAGTGACAGCCCTTATGCCTCACCTGCTGTCATGGTTAGGAAAAAAGATGGATCCTGGAGGATGTGTGTGGATTATAGGCAGTTGAATTCTCAGACTGTCCAGAACAAATTTCCTATGCCAATAATTGAAGATCTATTGGATGAGTTACATGGGGCTAAAATATTTTCGAAGTTAGACTTGAGGTCAGGTTATCATCAGATTAGAATGGCTGAGAGAGATATTCCAAAAACTGCATTCAGAATTCACCTAGGTCACTATGAGTATAATGTTATGTCATTTGGCTTGACCAATGCTCCAGCTACTTTTCAGGCTTTAATGAACCAGGTTTTGGCTCCTTTTCTCAGGAAGTTTGTGCTCGTTTTCTTTGATGATATATTGATTTATAGCAAAAATCAGTCTGAACATCTGGAGCATATAAAGTTGGTGATGCAAGCATTGGCAGCAAACCAACTGGTGGTGAGGCTGAAGAAGTGTGATTTTGGGCTGGACAGGGTGAACTACCTGGGACACATTATCTCAGAAGATGGAGTGTCCACAGATCCCAAAAAGATCTGTGCGATCAAAAATAGGAAAGCTCCTAGAAATGTGACTGAAGTACAAGATATTAAGAGGAGTTATGAAGAGGATGTTTTGGCACACAAGATTTTAAGCCTGATTGATACTGATGGTGATCCAGAACGAAACTATAAGTGTGAATCTGGATTGTTGAAATTCAAGGGCAGGATCTATGTTGGGGAAACAACTGAGATTAGACAACTGCTGCTGGAAGTCTACCACACCTCATGTTTTGGAGGACATTCTAGGATCAGGGCAACATATCATAGAATTAAGCAGCTGTTTTATTGGCCTAGTCTGAAGAGGCAAGTAGAGCATTATATCAGGGAGTGCCCCACTTGTCAGGTTACTAAGGCAGAACATGTTCACATTCCAGGGTTACTTAATCCTCTAGAAATACCTGATATGGCATGGGCTCATATTTCCATGGACTTTATTGAGGGACTACCAAAATCTCAGGGGAAGGATGTTATCTTGGTGGTGGTTGACAGGTTAACAAAATATACACATTTCTTAGCATTGTCTCATCCTTATACTGTGGAGCAGGTGGTACAGATATTTATGGATAACATACATAAACTGCATGGAATGCCTATCGCCATAGTTACTGATAGAGATCGGGTATTTACCAGTACATTTTTCCAGGAGATTTTTAAAATACATAAGGTTAAGCTCAGATTTAGCACTGCACATCACCCTCAGACAGATGGGCAAACAGAGAGGGTAAATCAATGCCTTGAATCTTATTTGCGCAGCATGACCTTTCAGGAACCACAGAAATGGTTTTCTTGGCTTGCATTGGCAGAATGGTGGTATAACACTACATATCATACATCCATCCAAATGACTCCATTTCAAGCTCTGTATGGGTATCCCCCTCCACAAATTAGTGAGTTTTCTATTCCCTGCAATATTTCTGAAGAAGCCAGAGTAACTTTAGAAGATAAAGCAATGATCCTGCAGAAGTTGAAGGGCAGTATGGGAGAGGCCCAGAGAAGGATGAAGTTTTATGCTGACAAGGGGAGAACTGAAAGAACCTTAGAAGTGGGGGATATGGTGTATTTGAAACTACAACCATACAGACAAGTGGCTATGGGAATCAGGGGCTCATTGAAGCTCAGGTCCAAATTTTATGGACCATTCAAGGTCATTGAGAAGATGGGTTCAGTAGCTTACAAGTTGCAGTTGCCGGAGGGAGCTGGGATTCATCCTGTTTTTCATGTAAGCCAGCTGAAGAAACATTTGGGGCCTAGAGCTATACCAATGCCCAATTTACCTGCAGTAGGACCTGATGGCCAAATCAAGACTGAACCAGCTGCTATCTTACAAAGAAGAATGGTTCCCAGGCATAATGAACCTGTGATACAGTGGCTGATTCTTTGGGAGAATTTAACTCCTGCAGACGCTACCTGGGAGGACGCATCATACATTCAAGCTGTGTTTCCAAATTTTCAACCTTGA

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Protein seq

MTKTRSSESMVDLEEMNEFRTDMVTLKKEVTNLKSLKGEVKEIKELLRELCKQKKMADQGGEGADATTAVKGSTGQGTDAAGPSTGVVFPSTAPEVRFEIEPNVVIPSAPMNQKSLFCQMGGSSGPGVDTTRPEPTVFTQGENFTGRMGGSVFGAPINHGGYQGGIPNFQAGFNRGPNQWNQGIHFVDPQRSCFGAPTSGGNHYAEAVIKGPRLEISLFTGEDPVDWLKQCEKFFEITGTPVDQWVNLAVAHLYGRAAKWFRGIGLPWQVITWPQWRDHPYLQEQYFTSCFIGGLRGEIKHDVCGQKPQGLLESYWYAKTYEKAANSRKAANNFNRNRPPNGGNQVKNVVNKGPPRMDGDKKEEKKCWFCKEPWFPRHQCKVKQAIHALLMECDETEELGEEMEEEEQPIEAEQEEKKEEKAEELLSISQSVVYGFDRPDTFSVLLKVNGRKAVRLIDSGSTGTFMDHKFALKSQCHLMNTKIKKVIVAGGGELKSELQVPEMDYEIQGEIFTNAFSLLPLQKYDIILGADWIYKYSPISLDLKKREMRVTKGGKVMEIQDFTKPGKYFQINAISEDVEEKAKIPENIQKILQQFPDVLIEPKGLPPRRECDHTINLKAGSEPPNLRPYRVPHYQKEAMEDIITELIKTEEIRTSDSPYASPAVMVRKKDGSWRMCVDYRQLNSQTVQNKFPMPIIEDLLDELHGAKIFSKLDLRSGYHQIRMAERDIPKTAFRIHLGHYEYNVMSFGLTNAPATFQALMNQVLAPFLRKFVLVFFDDILIYSKNQSEHLEHIKLVMQALAANQLVVRLKKCDFGLDRVNYLGHIISEDGVSTDPKKICAIKNRKAPRNVTEVQDIKRSYEEDVLAHKILSLIDTDGDPERNYKCESGLLKFKGRIYVGETTEIRQLLLEVYHTSCFGGHSRIRATYHRIKQLFYWPSLKRQVEHYIRECPTCQVTKAEHVHIPGLLNPLEIPDMAWAHISMDFIEGLPKSQGKDVILVVVDRLTKYTHFLALSHPYTVEQVVQIFMDNIHKLHGMPIAIVTDRDRVFTSTFFQEIFKIHKVKLRFSTAHHPQTDGQTERVNQCLESYLRSMTFQEPQKWFSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQISEFSIPCNISEEARVTLEDKAMILQKLKGSMGEAQRRMKFYADKGRTERTLEVGDMVYLKLQPYRQVAMGIRGSLKLRSKFYGPFKVIEKMGSVAYKLQLPEGAGIHPVFHVSQLKKHLGPRAIPMPNLPAVGPDGQIKTEPAAILQRRMVPRHNEPVIQWLILWENLTPADATWEDASYIQAVFPNFQP

Function Transposon Ty3-G Gag-Pol polyprotein [UniProtKB/Swiss-Prot:Q99315]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os05g38260 LOC_Os05g38260.1 Chr05 22430406 22435175 - MSU_osa1r7
CDS seq

ATGACGAAGACGCGCTCCAGCGAATCGATGGTGGATTTGGAAGAGATGAACGAGTTCAGGACTGACATGGTGACCCTGAAAAAGGAGGTAACAAATCTGAAATCGCTCAAGGGGGAGGTCAAGGAAATCAAAGAGCTGCTGCGTGAACTCTGTAAGCAAAAGAAAATGGCAGATCAGGGTGGAGAAGGAGCAGATGCTACTACAGCAGTTAAGGGATCAACGGGACAGGGTACTGACGCTGCTGGGCCGAGTACTGGAGTGGTTTTTCCCTCCACTGCACCTGAGGTACGTTTTGAAATCGAACCCAACGTTGTGATACCCTCTGCACCAATGAATCAGAAGAGTCTGTTTTGTCAAATGGGGGGCAGTAGTGGCCCAGGTGTTGACACCACTCGACCTGAGCCAACTGTGTTTACTCAAGGAGAGAATTTTACTGGTAGAATGGGAGGTTCTGTTTTTGGAGCTCCTATAAATCATGGGGGATATCAGGGAGGTATTCCCAATTTCCAAGCTGGATTTAATAGGGGACCTAACCAATGGAATCAGGGAATTCACTTTGTTGATCCACAGAGGAGTTGCTTTGGGGCACCTACTAGTGGAGGGAATCATTATGCTGAGGCTGTAATCAAGGGTCCTAGATTGGAAATCTCTTTATTTACTGGTGAAGATCCTGTAGACTGGCTAAAACAGTGTGAGAAATTCTTTGAGATCACTGGAACTCCAGTGGATCAATGGGTCAACCTAGCAGTGGCTCATCTATATGGAAGGGCAGCCAAATGGTTCAGGGGTATAGGATTGCCATGGCAAGTGATTACCTGGCCACAATGGAGGGACCATCCATACTTGCAAGAGCAGTATTTCACTAGTTGCTTTATTGGGGGCCTCAGAGGAGAAATTAAGCATGATGTTTGTGGGCAGAAGCCACAGGGTCTGTTGGAATCTTACTGGTATGCTAAAACATATGAGAAGGCTGCAAATTCCAGGAAGGCTGCTAATAATTTCAATAGAAACAGACCTCCAAATGGGGGAAATCAAGTTAAGAATGTGGTAAACAAAGGACCACCAAGGATGGATGGTGACAAGAAGGAGGAGAAGAAATGCTGGTTTTGTAAGGAGCCATGGTTTCCAAGGCATCAATGTAAGGTGAAACAAGCTATACATGCCTTACTGATGGAATGTGATGAGACTGAAGAGTTGGGGGAAGAAATGGAAGAAGAGGAGCAGCCCATTGAAGCTGAACAGGAAGAGAAGAAGGAAGAGAAGGCAGAAGAGCTGCTGAGTATATCCCAGAGTGTTGTATATGGTTTTGACCGACCTGATACTTTTTCTGTTTTGCTGAAGGTGAATGGGAGGAAAGCAGTACGATTGATTGACAGTGGAAGTACTGGGACATTCATGGATCACAAATTTGCCTTAAAGAGCCAATGTCATTTGATGAATACTAAGATAAAGAAAGTGATAGTAGCTGGAGGAGGGGAGTTAAAGTCAGAATTACAGGTGCCAGAGATGGACTATGAGATTCAAGGGGAAATTTTCACCAATGCATTCAGTCTATTGCCTTTACAGAAGTATGATATCATACTAGGAGCTGACTGGATATACAAGTACAGCCCAATTTCTTTAGATCTCAAGAAAAGAGAGATGAGGGTGACTAAAGGAGGAAAAGTGATGGAAATTCAAGATTTCACCAAGCCTGGAAAATATTTTCAGATAAATGCCATTAGTGAAGATGTGGAAGAGAAGGCAAAGATTCCTGAAAATATCCAGAAAATCTTGCAACAATTCCCAGATGTGCTTATTGAGCCGAAGGGATTACCTCCTAGGAGAGAATGTGATCACACTATTAATCTAAAAGCAGGATCAGAACCACCTAATCTCAGACCATATAGGGTCCCACATTACCAAAAGGAGGCAATGGAAGATATCATCACTGAGTTGATCAAAACAGAAGAGATTAGGACTAGTGACAGCCCTTATGCCTCACCTGCTGTCATGGTTAGGAAAAAAGATGGATCCTGGAGGATGTGTGTGGATTATAGGCAGTTGAATTCTCAGACTGTCCAGAACAAATTTCCTATGCCAATAATTGAAGATCTATTGGATGAGTTACATGGGGCTAAAATATTTTCGAAGTTAGACTTGAGGTCAGGTTATCATCAGATTAGAATGGCTGAGAGAGATATTCCAAAAACTGCATTCAGAATTCACCTAGGTCACTATGAGTATAATGTTATGTCATTTGGCTTGACCAATGCTCCAGCTACTTTTCAGGCTTTAATGAACCAGGTTTTGGCTCCTTTTCTCAGGAAGTTTGTGCTCGTTTTCTTTGATGATATATTGATTTATAGCAAAAATCAGTCTGAACATCTGGAGCATATAAAGTTGGTGATGCAAGCATTGGCAGCAAACCAACTGGTGGTGAGGCTGAAGAAGTGTGATTTTGGGCTGGACAGGGTGAACTACCTGGGACACATTATCTCAGAAGATGGAGTGTCCACAGATCCCAAAAAGATCTGTGCGATCAAAAATAGGAAAGCTCCTAGAAATGTGACTGAAGTACAAGATATTAAGAGGAGTTATGAAGAGGATGTTTTGGCACACAAGATTTTAAGCCTGATTGATACTGATGGTGATCCAGAACGAAACTATAAGTGTGAATCTGGATTGTTGAAATTCAAGGGCAGGATCTATGTTGGGGAAACAACTGAGATTAGACAACTGCTGCTGGAAGTCTACCACACCTCATGTTTTGGAGGACATTCTAGGATCAGGGCAACATATCATAGAATTAAGCAGCTGTTTTATTGGCCTAGTCTGAAGAGGCAAGTAGAGCATTATATCAGGGAGTGCCCCACTTGTCAGGTTACTAAGGCAGAACATGTTCACATTCCAGGGTTACTTAATCCTCTAGAAATACCTGATATGGCATGGGCTCATATTTCCATGGACTTTATTGAGGGACTACCAAAATCTCAGGGGAAGGATGTTATCTTGGTGGTGGTTGACAGGTTAACAAAATATACACATTTCTTAGCATTGTCTCATCCTTATACTGTGGAGCAGGTGGTACAGATATTTATGGATAACATACATAAACTGCATGGAATGCCTATCGCCATAGTTACTGATAGAGATCGGGTATTTACCAGTACATTTTTCCAGGAGATTTTTAAAATACATAAGGTTAAGCTCAGATTTAGCACTGCACATCACCCTCAGACAGATGGGCAAACAGAGAGGGTAAATCAATGCCTTGAATCTTATTTGCGCAGCATGACCTTTCAGGAACCACAGAAATGGTTTTCTTGGCTTGCATTGGCAGAATGGTGGTATAACACTACATATCATACATCCATCCAAATGACTCCATTTCAAGCTCTGTATGGGTATCCCCCTCCACAAATTAGTGAGTTTTCTATTCCCTGCAATATTTCTGAAGAAGCCAGAGTAACTTTAGAAGATAAAGCAATGATCCTGCAGAAGTTGAAGGGCAGTATGGGAGAGGCCCAGAGAAGGATGAAGTTTTATGCTGACAAGGGGAGAACTGAAAGAACCTTAGAAGTGGGGGATATGGTGTATTTGAAACTACAACCATACAGACAAGTGGCTATGGGAATCAGGGGCTCATTGAAGCTCAGGTCCAAATTTTATGGACCATTCAAGGTCATTGAGAAGATGGGTTCAGTAGCTTACAAGTTGCAGTTGCCGGAGGGAGCTGGGATTCATCCTGTTTTTCATGTAAGCCAGCTGAAGAAACATTTGGGGCCTAGAGCTATACCAATGCCCAATTTACCTGCAGTAGGACCTGATGGCCAAATCAAGACTGAACCAGCTGCTATCTTACAAAGAAGAATGGTTCCCAGGCATAATGAACCTGTGATACAGTGGCTGATTCTTTGGGAGAATTTAACTCCTGCAGACGCTACCTGGGAGGACGCATCATACATTCAAGCTGTGTTTCCAAATTTTCAACCTTGA

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Protein seq

MTKTRSSESMVDLEEMNEFRTDMVTLKKEVTNLKSLKGEVKEIKELLRELCKQKKMADQGGEGADATTAVKGSTGQGTDAAGPSTGVVFPSTAPEVRFEIEPNVVIPSAPMNQKSLFCQMGGSSGPGVDTTRPEPTVFTQGENFTGRMGGSVFGAPINHGGYQGGIPNFQAGFNRGPNQWNQGIHFVDPQRSCFGAPTSGGNHYAEAVIKGPRLEISLFTGEDPVDWLKQCEKFFEITGTPVDQWVNLAVAHLYGRAAKWFRGIGLPWQVITWPQWRDHPYLQEQYFTSCFIGGLRGEIKHDVCGQKPQGLLESYWYAKTYEKAANSRKAANNFNRNRPPNGGNQVKNVVNKGPPRMDGDKKEEKKCWFCKEPWFPRHQCKVKQAIHALLMECDETEELGEEMEEEEQPIEAEQEEKKEEKAEELLSISQSVVYGFDRPDTFSVLLKVNGRKAVRLIDSGSTGTFMDHKFALKSQCHLMNTKIKKVIVAGGGELKSELQVPEMDYEIQGEIFTNAFSLLPLQKYDIILGADWIYKYSPISLDLKKREMRVTKGGKVMEIQDFTKPGKYFQINAISEDVEEKAKIPENIQKILQQFPDVLIEPKGLPPRRECDHTINLKAGSEPPNLRPYRVPHYQKEAMEDIITELIKTEEIRTSDSPYASPAVMVRKKDGSWRMCVDYRQLNSQTVQNKFPMPIIEDLLDELHGAKIFSKLDLRSGYHQIRMAERDIPKTAFRIHLGHYEYNVMSFGLTNAPATFQALMNQVLAPFLRKFVLVFFDDILIYSKNQSEHLEHIKLVMQALAANQLVVRLKKCDFGLDRVNYLGHIISEDGVSTDPKKICAIKNRKAPRNVTEVQDIKRSYEEDVLAHKILSLIDTDGDPERNYKCESGLLKFKGRIYVGETTEIRQLLLEVYHTSCFGGHSRIRATYHRIKQLFYWPSLKRQVEHYIRECPTCQVTKAEHVHIPGLLNPLEIPDMAWAHISMDFIEGLPKSQGKDVILVVVDRLTKYTHFLALSHPYTVEQVVQIFMDNIHKLHGMPIAIVTDRDRVFTSTFFQEIFKIHKVKLRFSTAHHPQTDGQTERVNQCLESYLRSMTFQEPQKWFSWLALAEWWYNTTYHTSIQMTPFQALYGYPPPQISEFSIPCNISEEARVTLEDKAMILQKLKGSMGEAQRRMKFYADKGRTERTLEVGDMVYLKLQPYRQVAMGIRGSLKLRSKFYGPFKVIEKMGSVAYKLQLPEGAGIHPVFHVSQLKKHLGPRAIPMPNLPAVGPDGQIKTEPAAILQRRMVPRHNEPVIQWLILWENLTPADATWEDASYIQAVFPNFQP

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.382916 0.417093 0.409792

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0603800 SBH 2.752308 1.019443 1.593370
Nipponbare | IRGSP 1.0 | MSU LOC_Os01g60480 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os04g0603800 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_05G0346300 RBH 0.0029865 0.0154755 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_05G0356800 RBH 0.004714 0 0.002766
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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Huazhong Agricultural University

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