Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g38190 | OGI:05060890 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:22397889-22403956 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGTCTTGAAGACGTAAAGAATGTCTCATCATCATCGGTCCCTTGTCCGTTGTGCTCGATGGGCTCCTCCGCCGCCGCCGGCCGCCGCATTTGCCGTAACCTCGCCGCGCCGTCCTGGTGTACAAATTTTTCCTGCACACGCAGGGCCGCAGTGTAGAGTCCAATCCAATCCAATCCAATCTCCGCTGACATCTCCCCACTCCAAGCCCACACGGGCCACGGCCACACATCGACGCTCTCCGTCCGTAGCATGACACCAAGAACCGCGGCGGCGCTGTCAGGTCTACTCCGCGGCAAGAATGCAGTGAACCTCGCACCAGAGCAGGTCCCGAAGCTGCTTGCTACGCGCGCGTCACCTGCCCGGGTGGAGGATGGCGTCTGTCTCCGTGACCCTCCCGGTGCCCGCTACCCGCTCGACGAAATTCCTCGCCGGGATGCCGCGGTGGGCGCCAACCGCGTACTCTTCGACTATGCGCGGCGCGGGATGGTCCTGGAGGTCCTGGATCAGTTCTCTGTCGCGCGCCGCGGCGGCGTGCTGGTTGACAGCGCCACGCTGTCCTGTGTTCTCAAGGCTTGCAGATCAGTGCCAGACAGAGTTCTTGGGGAGCAGCTGCATTGCCTGTGCGTCAAGTGTGGGCATGATCGAGGTGAGGTCAGTGCCGGTACGTCGCTTGTCGATATGTACATGAAGTGTGGTAGCGTCTGTGAGGGGATAGAGGTGTTTGAAGGAATGCCTAAGAAGAATGTCGTCACGTGGACATCGTTGCTAACTGGTTGTGCTCACGCACAGATGCATTCGGAGGTCATGGCCTTATTCTTCAGGATGCGTGCTGAGGGTATATGGCCCAATCCATTCACATTCGCGAGCGTTCTCTCTGCAGTAGCGAGCCAGGGTGCACTTGATCTTGGGCAGCGTGTGCATGCTCAATCAGTTAAGTTTGGATGCCGCTCGTCCGTGTTTGTCTGCAATTCTCTGATGAACATGTATGCAAAGTGTGGATTGGTTGAAGATGCCAAGTCTGTGTTTAATTGGATGGAGACCAGAGACATGGTGTCATGGAACACGTTAATGGCAGGTCTTCAATTGAATGAGTGCGAACTGGAAGCGCTACAACTGTTCCATGAATCACGAGCCACCATGGGAAAGATGACACAGTCAACATATGCTACAGTGATTAAGTTATGTGCAAACCTCAAACAACTGGCCCTGGCACGTCAACTCCACAGCTGTGTGTTGAAACATGGGTTTCATTTGACTGGAAATGTAATGACAGCCCTCGCGGATGCTTACAGCAAATGTGGTGAATTGGCTGACGCTTTAAACATATTTTCTATGACTACGGGATCTCGGAATGTTGTTTCATGGACAGCTATTATCAGTGGATGCATTCAGAATGGTGACATTCCTCTTGCTGTTGTTCTTTTTAGCAGAATGAGAGAAGACAGGGTCATGCCAAATGAGTTCACCTACTCTGCAATGCTGAAAGCATCACTATCCATCTTACCTCCCCAGATACATGCCCAGGTCATCAAGACCAACTACCAGCATATCCCATTTGTTGGAACTGCACTTCTTGCTTCATACTCAAAATTTGGCAGCACTGAAGATGCCCTCTCTATATTCAAAATGATTGAGCAGAAGGATGTCGTTGCATGGTCCGCAATGTTGTCTTGCCATGCCCAAGCTGGTGACTGTGAAGGTGCCACATATTTATTCAACAAGATGGCCATCCAAGGAATCAAGCCAAATGAGTTCACAATATCAAGTGTAATTGATGCCTGTGCTTGCCCATCAGCTGGTGTTGACCAGGGTAGGCAGTTCCATGCTATTTCGATCAAATACAGATACCATGATGCAATTTGTGTGAGCAGTGCACTTGTGAGCATGTACTCAAGGAAAGGGAACATTGACAGTGCTCAAATTGTCTTTGAGAGGCAAACAGATAGAGATTTGGTTTCATGGAACTCGATGATATCAGGGTATGCGCAGCACGGTTACAGCATGAAGGCCATCGAAACATTTCGACAGATGGAAGCTTCGGGTATCCAGATGGATGGCGTCACATTCCTTGCTGTTATCATGGGATGCACTCATAATGGTCTTGTTGTAGAAGGCCAGCAATACTTTGACTCGATGGTCAGGGACCACAAGATCAATCCCACCATGGAGCATTATGCATGTATGGTGGATCTATATAGCCGTGCAGGCAAGCTGGATGAGACAATGAGCCTTATAAGAGACATGCCATTCCCTGCAGGTGCAATGGTATGGCGCACATTGCTAGGTGCTTGCAGAGTTCACAAAAATGTTGAGCTTGGGAAGTTTTCCGCAGATAAGCTGCTATCGCTTGAGCCACATGATTCATCTACATATGTGCTTCTCTCGAACATTTACGCGGCTGCAGGAAAGTGGAAAGAGAGGGATGAAGTGAGGAAGCTCATGGACTATAGAAAGGTGAAGAAAGAAGCTGGATGCAGCTGGATTCAGATCAAGAATAAAGTTCACTCCTTTATAGCCTTTGACAAGTCACATCCTATGTCAGATCAGATATATAAAAAGCTCAAGGTAATCATAACCAGGTTGAAGCAAGATGGTTATTCACCGAACACAAGCTTTGTGCTTCATGACATAGCAGAAGACCAGAAGGAAGCCATGCTGGTTGCACACAGCGAGCGACTAGCTCTTGCCTTTGGCCTGATAGCTACACCACCTGGAACACCCCTTCAGATTGTCAAAAACCTAAGGGTGTGTGGGGACTGCCATATGGTTATGAAGATGGTTTCGATGATTGAGGACAGGGAGATCATCATGCGAGACTGCAGCAGGTTCCATCACTTCAATGGCGGGGCCTGCTCCTGTGGTGATTTCTGGTGAATGAAGGGCAGAACAAACTGACTGGATAAGGTGTACGCCCTGGCAGTGCCAATTTGAACAATATTACTGTGAGTTGACATTAGAGTATTGGGTTGTCTATAGTTGATATCAGTACAAGCCCACAAATAGTGTTGTAGTTGCTTGTAGAAGCAGAGATCAGTGTTAATACTAGAGCATTGGTTTGTTAGCATTGCCAGAGAAAGCCAGTTGCCACAAGTGGTATAATTGCTTTATGCAGAAACAGGAATAAACTTGCTCTCATTTTTTTTGGCTTTATGTTTGATGAAGTGAAACCGTTCATCAAAGCAGCATGTTTATTACCTTCTCAAGTTTTGGCATGCTGAATTACAGGAATCTACAGCTACACTGGACCGCAAAGATATAGAAGTTCTTTTCACCAGTTCAGTTATGCATTCATAATCCACAACAAGCAGTTTTACTTGTGTTTTAATATTGGAGTGGCTCTACAATGCCTGTGCAAAGAACAAAATTGTCCTATGTTTGAATGAATGTATTGGTAATCTGATGGCCTCAATAACACTAACTATATTCAACAAGGACAGTTTTCAGAAATAATGCCATACAGTAGTCTAAGCAACATTTTGTTTAACAGGAGATGAACAAACTCATGAGAAAGCACCTCCAGAAGCTCAACTTCACTGCACCAGTCAGATCCAGGTAATCCACATTTTTTATTTGACTCAACCATTGCAATGGCAGTTTCTCCTGTAGGAGGCTTTACTTGTGCTTTTCTATAGCTGCTTGTTGCCTCCAAAGTACAGTTGTGAGTTGTCTAGAATAGTATAATGCGTGTGAAACATTGGTAGTTAATGCCCTCTTGGATAGAATAGGCGTATTTAGTCCTTCAAATTAAGGAGTTGTTTGCAGTAGTATGCTCTATTCTATCCCCTTCACTTCAGAGGATCTTTTTAATAATTTTTATGGATACAAGCATTCATGCATATATGCAAGTGTTGTAATGAAAATGGGCACTTCCTTCATTCATATTAGTCATGTAATCGTGCTTTGCACGTCTTTAGGGTCCCGTTTAAGAACCCTGTATTGTGCCATTTCAACCTGTCCATGGCTAATTGTTACTGTTATGGCTCTGTGTAAATCTAACCAAATATTACACTCTGAACTAAACAATAAAGTATTCAAGCTTCTAGATTCTAGAGAAGCCTACTGTATTCATTGTATCATTCTTCAGTAAGTAACTCACAATTAGATCCAGCAGGAAGTATGAAATGCAGGCAGACAGGTTTGGAGTAATAATGACAAACACATGCATAAATCGCATATTCAGAGTTCAGACTATATGAATATCATGAAAATGTAGGCACCTCGTTCGTATGAAGCAAACTGTTAATGGTGGAGGGGAAAAAAAGCATGATTCAGTTTAGGTGTGACCGTGTGAGCGAGATTAAATCTCGAGCAAAGAAGGAGAAGAAAGTTCCTGCCTCAAAATTGCCTTCATCCTCCCTGCGTCTCGGCCTCTGCTTCTCTTGCTGCTGCTATGGATGGGCCAGCAATGGCCTGGAGATGGCCCTGCTTGTTGTCAGGATCTGGAAGTTCAGAGTAGCCAAATTTCTGAATTTTTGCTGAAGATCAGGTCTCTAATCTGGCTGGGGCTGACATATCATCTTGGCTTGACACAGGATAAAATGTGTCAGCTAGGCATCCTTACACTCTGCCTCCTGCTCGCCCACCTGCTCATGTTCCTCCTCTGCAACTTCTCCTACTTCCGTTCATCCTTTTCCTGTTCCTCCTCCCCTAGCCTACAGAAAATACAAGGAAAAACATGTTTGAGATGTGTATCCTAGGAAAACATTTTGTTTTACTAAGAAGTGAAAAGACCAGGTAATTGTGTAGGAATTGTGATGTATATTCTACATAGGGTATTTTTGTTGGGTGTTGGGGCTTGAAAGAGACATGATGATACCAGATTGAGATAAGATTGTCACTGATTTTTCTTTTTGGGTGGTCATGCAGCCATGGAAGGATTAAAAATCAAAGGAATGGAAATCATTGTTGTGCTAGTGGCTCTGGGTACGTAGAAGATTCTTCAACTGCATGCAGTTCATCTAGCTCCAATTGACTATGCAGTTCATGAAGTGCAGTAAGCTAGAGCTGATCAGGTATGTTTACGAAGATGGAATAGTGACCTTGCAGAGGGAACATCATTTTTATAAGTCAGCCACAAGAATTAGAGATGTTATATTTATTTGATGTTGGGAATACAGAATGACATTTGAAGGTTTTGACGATACAGATTTGAATACCAGCATATAATGGTGAGTTGAATATTGGCCTGAATATTTTTAATTGGCTGTGCCAGGTCCATAACAATGATATCAGTATAACCAGGAGTTGTTGATGTTCAGAAGAACAGGACATCATGTATACTTGGAAAGTACCTGGGGAAAATGTTTAGAAGAGATGAGCAGGAACTGAAATCTCTTGGTGAGATTTAGGCTTGCACTTCCTGCTCCTGCTCAAGAAGGCTGCTATGTCTAATGTAGGCCCTAATTTTCTTTGCTTCAGGTAGTGGTACTTATCCCCGTGGAATTTCTTCGGTGGGTCATCATAATCCTTCTTGGTGGTGCTTCATCTTGGGTCATCTCCTTAAACTTGAAGGAATGCACTGAAGGAGCGGATATGATGGTTTTGATTGCTAGTGCTGCAGTTCTCCAATTTGCTGTGGCACTGTTCATCAAAGTTTTCTTTTTCGCCTGAGATTGTCTTTTTTGGTGTTGCTCAGGTCTGCCTCTCCTTTTACCTTTTAGCGACTAGATACCATAGCACCAAAAACCTTCCCAACAGTACACGGACCGTGCCTTTATGAATGTAAGTTAGTAGTCTTATCATTCTATTGTTCCTTATCAAATTGGGTCAAAGTATTCTAATAGGTTATATTTTGCTTTTGACAGGTGAGCTTGATGTTTTGTCTGCTCCCATCATTCTGTTCTGGCGAGCATCCTTTTGAGGACCAAGTGGACTAGTTTTACTTGACATACATATTAACACTAGATTGATAGACCTTGTGTTTTGTTCATTTCTAAGGGTTTTTTACTCATCTAGTTCCAAGAACTTCACTGTATATTCCAATTCAGAATTGCCGAGTGTCATCTAAATTTGCATAGTGAACCTTGGACCATTTTGAAGTACAATAACCATTTGACTATATTTTGAC
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| CDS seq | ATGACACCAAGAACCGCGGCGGCGCTGTCAGGTCTACTCCGCGGCAAGAATGCAGTGAACCTCGCACCAGAGCAGGTCCCGAAGCTGCTTGCTACGCGCGCGTCACCTGCCCGGGTGGAGGATGGCGTCTGTCTCCGTGACCCTCCCGGTGCCCGCTACCCGCTCGACGAAATTCCTCGCCGGGATGCCGCGGTGGGCGCCAACCGCGTACTCTTCGACTATGCGCGGCGCGGGATGGTCCTGGAGGTCCTGGATCAGTTCTCTGTCGCGCGCCGCGGCGGCGTGCTGGTTGACAGCGCCACGCTGTCCTGTGTTCTCAAGGCTTGCAGATCAGTGCCAGACAGAGTTCTTGGGGAGCAGCTGCATTGCCTGTGCGTCAAGTGTGGGCATGATCGAGGTGAGGTCAGTGCCGGTACGTCGCTTGTCGATATGTACATGAAGTGTGGTAGCGTCTGTGAGGGGATAGAGGTGTTTGAAGGAATGCCTAAGAAGAATGTCGTCACGTGGACATCGTTGCTAACTGGTTGTGCTCACGCACAGATGCATTCGGAGGTCATGGCCTTATTCTTCAGGATGCGTGCTGAGGGTATATGGCCCAATCCATTCACATTCGCGAGCGTTCTCTCTGCAGTAGCGAGCCAGGGTGCACTTGATCTTGGGCAGCGTGTGCATGCTCAATCAGTTAAGTTTGGATGCCGCTCGTCCGTGTTTGTCTGCAATTCTCTGATGAACATGTATGCAAAGTGTGGATTGGTTGAAGATGCCAAGTCTGTGTTTAATTGGATGGAGACCAGAGACATGGTGTCATGGAACACGTTAATGGCAGGTCTTCAATTGAATGAGTGCGAACTGGAAGCGCTACAACTGTTCCATGAATCACGAGCCACCATGGGAAAGATGACACAGTCAACATATGCTACAGTGATTAAGTTATGTGCAAACCTCAAACAACTGGCCCTGGCACGTCAACTCCACAGCTGTGTGTTGAAACATGGGTTTCATTTGACTGGAAATGTAATGACAGCCCTCGCGGATGCTTACAGCAAATGTGGTGAATTGGCTGACGCTTTAAACATATTTTCTATGACTACGGGATCTCGGAATGTTGTTTCATGGACAGCTATTATCAGTGGATGCATTCAGAATGGTGACATTCCTCTTGCTGTTGTTCTTTTTAGCAGAATGAGAGAAGACAGGGTCATGCCAAATGAGTTCACCTACTCTGCAATGCTGAAAGCATCACTATCCATCTTACCTCCCCAGATACATGCCCAGGTCATCAAGACCAACTACCAGCATATCCCATTTGTTGGAACTGCACTTCTTGCTTCATACTCAAAATTTGGCAGCACTGAAGATGCCCTCTCTATATTCAAAATGATTGAGCAGAAGGATGTCGTTGCATGGTCCGCAATGTTGTCTTGCCATGCCCAAGCTGGTGACTGTGAAGGTGCCACATATTTATTCAACAAGATGGCCATCCAAGGAATCAAGCCAAATGAGTTCACAATATCAAGTGTAATTGATGCCTGTGCTTGCCCATCAGCTGGTGTTGACCAGGGTAGGCAGTTCCATGCTATTTCGATCAAATACAGATACCATGATGCAATTTGTGTGAGCAGTGCACTTGTGAGCATGTACTCAAGGAAAGGGAACATTGACAGTGCTCAAATTGTCTTTGAGAGGCAAACAGATAGAGATTTGGTTTCATGGAACTCGATGATATCAGGGTATGCGCAGCACGGTTACAGCATGAAGGCCATCGAAACATTTCGACAGATGGAAGCTTCGGGTATCCAGATGGATGGCGTCACATTCCTTGCTGTTATCATGGGATGCACTCATAATGGTCTTGTTGTAGAAGGCCAGCAATACTTTGACTCGATGGTCAGGGACCACAAGATCAATCCCACCATGGAGCATTATGCATGTATGGTGGATCTATATAGCCGTGCAGGCAAGCTGGATGAGACAATGAGCCTTATAAGAGACATGCCATTCCCTGCAGGTGCAATGGTATGGCGCACATTGCTAGGTGCTTGCAGAGTTCACAAAAATGTTGAGCTTGGGAAGTTTTCCGCAGATAAGCTGCTATCGCTTGAGCCACATGATTCATCTACATATGTGCTTCTCTCGAACATTTACGCGGCTGCAGGAAAGTGGAAAGAGAGGGATGAAGTGAGGAAGCTCATGGACTATAGAAAGGTGAAGAAAGAAGCTGGATGCAGCTGGATTCAGATCAAGAATAAAGTTCACTCCTTTATAGCCTTTGACAAGTCACATCCTATGTCAGATCAGATATATAAAAAGCTCAAGGTAATCATAACCAGGTTGAAGCAAGATGGTTATTCACCGAACACAAGCTTTGTGCTTCATGACATAGCAGAAGACCAGAAGGAAGCCATGCTGGTTGCACACAGCGAGCGACTAGCTCTTGCCTTTGGCCTGATAGCTACACCACCTGGAACACCCCTTCAGATTGTCAAAAACCTAAGGGTGTGTGGGGACTGCCATATGGTTATGAAGATGGTTTCGATGATTGAGGACAGGGAGATCATCATGCGAGACTGCAGCAGGTTCCATCACTTCAATGGCGGGGCCTGCTCCTGTGGTGATTTCTGGTGA
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| Protein seq | MTPRTAAALSGLLRGKNAVNLAPEQVPKLLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW |
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| Function | Pentatricopeptide repeat-containing protein At2g27610 [UniProtKB/Swiss-Prot:Q9ZUW3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g38190 | LOC_Os05g38190.2 | Chr05 | 22397889 | 22403956 | + | MSU_osa1r7 | ||
| CDS seq | ATGACACCAAGAACCGCGGCGGCGCTGTCAGGTCTACTCCGCGGCAAGAATGCAGTGAACCTCGCACCAGAGCAGGTCCCGAAGCTGCTTGCTACGCGCGCGTCACCTGCCCGGGTGGAGGATGGCGTCTGTCTCCGTGACCCTCCCGGTGCCCGCTACCCGCTCGACGAAATTCCTCGCCGGGATGCCGCGGTGGGCGCCAACCGCGTACTCTTCGACTATGCGCGGCGCGGGATGGTCCTGGAGGTCCTGGATCAGTTCTCTGTCGCGCGCCGCGGCGGCGTGCTGGTTGACAGCGCCACGCTGTCCTGTGTTCTCAAGGCTTGCAGATCAGTGCCAGACAGAGTTCTTGGGGAGCAGCTGCATTGCCTGTGCGTCAAGTGTGGGCATGATCGAGGTGAGGTCAGTGCCGGTACGTCGCTTGTCGATATGTACATGAAGTGTGGTAGCGTCTGTGAGGGGATAGAGGTGTTTGAAGGAATGCCTAAGAAGAATGTCGTCACGTGGACATCGTTGCTAACTGGTTGTGCTCACGCACAGATGCATTCGGAGGTCATGGCCTTATTCTTCAGGATGCGTGCTGAGGGTATATGGCCCAATCCATTCACATTCGCGAGCGTTCTCTCTGCAGTAGCGAGCCAGGGTGCACTTGATCTTGGGCAGCGTGTGCATGCTCAATCAGTTAAGTTTGGATGCCGCTCGTCCGTGTTTGTCTGCAATTCTCTGATGAACATGTATGCAAAGTGTGGATTGGTTGAAGATGCCAAGTCTGTGTTTAATTGGATGGAGACCAGAGACATGGTGTCATGGAACACGTTAATGGCAGGTCTTCAATTGAATGAGTGCGAACTGGAAGCGCTACAACTGTTCCATGAATCACGAGCCACCATGGGAAAGATGACACAGTCAACATATGCTACAGTGATTAAGTTATGTGCAAACCTCAAACAACTGGCCCTGGCACGTCAACTCCACAGCTGTGTGTTGAAACATGGGTTTCATTTGACTGGAAATGTAATGACAGCCCTCGCGGATGCTTACAGCAAATGTGGTGAATTGGCTGACGCTTTAAACATATTTTCTATGACTACGGGATCTCGGAATGTTGTTTCATGGACAGCTATTATCAGTGGATGCATTCAGAATGGTGACATTCCTCTTGCTGTTGTTCTTTTTAGCAGAATGAGAGAAGACAGGGTCATGCCAAATGAGTTCACCTACTCTGCAATGCTGAAAGCATCACTATCCATCTTACCTCCCCAGATACATGCCCAGGTCATCAAGACCAACTACCAGCATATCCCATTTGTTGGAACTGCACTTCTTGCTTCATACTCAAAATTTGGCAGCACTGAAGATGCCCTCTCTATATTCAAAATGATTGAGCAGAAGGATGTCGTTGCATGGTCCGCAATGTTGTCTTGCCATGCCCAAGCTGGTGACTGTGAAGGTGCCACATATTTATTCAACAAGATGGCCATCCAAGGAATCAAGCCAAATGAGTTCACAATATCAAGTGTAATTGATGCCTGTGCTTGCCCATCAGCTGGTGTTGACCAGGGTAGGCAGTTCCATGCTATTTCGATCAAATACAGATACCATGATGCAATTTGTGTGAGCAGTGCACTTGTGAGCATGTACTCAAGGAAAGGGAACATTGACAGTGCTCAAATTGTCTTTGAGAGGCAAACAGATAGAGATTTGGTTTCATGGAACTCGATGATATCAGGGTATGCGCAGCACGGTTACAGCATGAAGGCCATCGAAACATTTCGACAGATGGAAGCTTCGGGTATCCAGATGGATGGCGTCACATTCCTTGCTGTTATCATGGGATGCACTCATAATGGTCTTGTTGTAGAAGGCCAGCAATACTTTGACTCGATGGTCAGGGACCACAAGATCAATCCCACCATGGAGCATTATGCATGTATGGTGGATCTATATAGCCGTGCAGGCAAGCTGGATGAGACAATGAGCCTTATAAGAGACATGCCATTCCCTGCAGGTGCAATGGTATGGCGCACATTGCTAGGTGCTTGCAGAGTTCACAAAAATGTTGAGCTTGGGAAGTTTTCCGCAGATAAGCTGCTATCGCTTGAGCCACATGATTCATCTACATATGTGCTTCTCTCGAACATTTACGCGGCTGCAGGAAAGTGGAAAGAGAGGGATGAAGTGAGGAAGCTCATGGACTATAGAAAGGTGAAGAAAGAAGCTGGATGCAGCTGGATTCAGATCAAGAATAAAGTTCACTCCTTTATAGCCTTTGACAAGTCACATCCTATGTCAGATCAGATATATAAAAAGCTCAAGGTAATCATAACCAGGTTGAAGCAAGATGGTTATTCACCGAACACAAGCTTTGTGCTTCATGACATAGCAGAAGACCAGAAGGAAGCCATGCTGGTTGCACACAGCGAGCGACTAGCTCTTGCCTTTGGCCTGATAGCTACACCACCTGGAACACCCCTTCAGATTGTCAAAAACCTAAGGGTGTGTGGGGACTGCCATATGGTTATGAAGATGGTTTCGATGATTGAGGACAGGGAGATCATCATGCGAGACTGCAGCAGGTTCCATCACTTCAATGGCGGGGCCTGCTCCTGTGGTGATTTCTGGTGA
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| Protein seq | MTPRTAAALSGLLRGKNAVNLAPEQVPKLLATRASPARVEDGVCLRDPPGARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACRSVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKASLSILPPQIHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKLMDYRKVKKEAGCSWIQIKNKVHSFIAFDKSHPMSDQIYKKLKVIITRLKQDGYSPNTSFVLHDIAEDQKEAMLVAHSERLALAFGLIATPPGTPLQIVKNLRVCGDCHMVMKMVSMIEDREIIMRDCSRFHHFNGGACSCGDFW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.075132 | 0.057474 | 0.069901 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0455900 | RBH | 0.115108 | 0.088534 | 0.281338 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g62220 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0455900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0019560 | RBH | 0.149823 | 1.447288 | 2.074572 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0019500 | RBH | 0.000000 | 0.789868 | 0.404853 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0019380 | RBH | 0.154662 | 0.0 | 0.243150 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0019380 | RBH | 0.0 | 0.064915 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0019530 | RBH | 0.864867 | 1.137361 | 1.119805 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0345800 | SBH | 3.230064 | 7.702409 | 5.2110105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0019110 | RBH | 0.031975 | 0.151282 | 0.075208 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0356200 | RBH | 0.6147415 | 1.310047 | 5.3222525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0019360 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0019330 | RBH | 0.047521 | 1.979580 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0019400 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0019500 | RBH | 0.121828 | 0.046386 | 0.076077 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0019510 | RBH | 0.000000 | 0.914985 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G018990 | RBH | 0.051864 | 0.570282 | 0.410834 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0019350 | RBH | 0.0 | 1.269859 | 0.756424 |
