Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g37050 | OGI:05058730 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:21650252-21651057 | ||||||||
| Gene Symbol | OsMYB-1, MYB-1, MYB1, OsARM1, ARM1, MID1 | ||||||||||
| DNA seq | GCTAATCGCCACGCCTATACTTCTCTAGCCCTTCTAGGAACAACCTATCCATAATAATAACAAAAAATGTTTGAAAAGGAAATTATCCACGATCCGGTGTAGTAGACGTATAGTACTAGGTACTATAGCCGTTAGAAAACCTAGGGCCCGCGTATAAGTGAGATGGGTGGTGTGAGCTTGGCAAGTAATGCGACATAAAAAGAAGGTGAAGTATCTATAATAACCTCAAAGAGCACGCCAAGAATAGCAGGGGAAAAGGAAAAAATACTACTCCCTCTGTCCCAAAAAAATTCAACCTAAGAGGGGATCCCCTCCTAGCACAACGAATCTGGATAGCCCTTTGTCCAAATTCGTTGTAATAGGAGGGGATAGGTTGTTTTTTTTACGGAGGGAGTATGGAATAGAGCCGAGATTTAACGGCATAGATCATATGCGTACCTGTGCTCCTCCTCTGTCCAAGGCACACCACGGCGACGCTCATCCCCACCGCGGCTTGCGCCCTGCGCTCCACCACGGCCGGCGCCATCATCCCAGCAGCCCGGGGATGCGACCATGCCGCGCTCGATGAGGTCGACGTCATCCACAAGCACCCGGTAGTGCTCCCAGACCTCATGTGCCGAGCGCCCTGGGAGCCGAGATGCGACGATTGCCCATCGGTTGTGCGTGTGCTCCGGGAACGCCACGAGCGCGCTCTCGAACACCTTGTCCTCCGCCTTGCTCCACGGCCTGCTGCTCGGCACCAGCGGCGCCACCCACGACGACGACGAGCCACCCATCTCGCCACCGTAGAACGCCATTCCTTTGTT
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| CDS seq | ATGGCGTTCTACGGTGGCGAGATGGGTGGCTCGTCGTCGTCGTGGGTGGCGCCGCTGGTGCCGAGCAGCAGGCCGTGGAGCAAGGCGGAGGACAAGGTGTTCGAGAGCGCGCTCGTGGCGTTCCCGGAGCACACGCACAACCGATGGGCAATCGTCGCATCTCGGCTCCCAGGGCGCTCGGCACATGAGGTCTGGGAGCACTACCGGGTGCTTGTGGATGACGTCGACCTCATCGAGCGCGGCATGGTCGCATCCCCGGGCTGCTGGGATGATGGCGCCGGCCGTGGTGGAGCGCAGGGCGCAAGCCGCGGTGGGGATGAGCGTCGCCGTGGTGTGCCTTGGACAGAGGAGGAGCACAGGTTGTTCCTAGAAGGGCTAGAGAAGTATAGGCGTGGCGATTAG
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| Protein seq | MAFYGGEMGGSSSSWVAPLVPSSRPWSKAEDKVFESALVAFPEHTHNRWAIVASRLPGRSAHEVWEHYRVLVDDVDLIERGMVASPGCWDDGAGRGGAQGASRGGDERRRGVPWTEEEHRLFLEGLEKYRRGD |
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| Function | Transcription factor DIVARICATA [UniProtKB/Swiss-Prot:Q8S9H7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g37050 | LOC_Os05g37050.1 | Chr05 | 21650252 | 21651057 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGTTCTACGGTGGCGAGATGGGTGGCTCGTCGTCGTCGTGGGTGGCGCCGCTGGTGCCGAGCAGCAGGCCGTGGAGCAAGGCGGAGGACAAGGTGTTCGAGAGCGCGCTCGTGGCGTTCCCGGAGCACACGCACAACCGATGGGCAATCGTCGCATCTCGGCTCCCAGGGCGCTCGGCACATGAGGTCTGGGAGCACTACCGGGTGCTTGTGGATGACGTCGACCTCATCGAGCGCGGCATGGTCGCATCCCCGGGCTGCTGGGATGATGGCGCCGGCCGTGGTGGAGCGCAGGGCGCAAGCCGCGGTGGGGATGAGCGTCGCCGTGGTGTGCCTTGGACAGAGGAGGAGCACAGGTTGTTCCTAGAAGGGCTAGAGAAGTATAGGCGTGGCGATTAG
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| Protein seq | MAFYGGEMGGSSSSWVAPLVPSSRPWSKAEDKVFESALVAFPEHTHNRWAIVASRLPGRSAHEVWEHYRVLVDDVDLIERGMVASPGCWDDGAGRGGAQGASRGGDERRRGVPWTEEEHRLFLEGLEKYRRGD |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0442400 | SBH | 0.0 | 0.0 | 1.283261 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g64360 | SBH | 0.287459 | 0.294660 | 0.336706 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0442400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018820 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018750 | RBH | 0.0 | 0.0 | 0.220506 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018640 | SBH | 0.0 | 0.0 | 1.057333 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018640 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018880 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0334000 | RBH | 0.0657875 | 0.8252885 | 1.923932 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0018390 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0344600 | RBH | 0.3060235 | 0.01901 | 0.200562 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0018700 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0018640 | SBH | 0.0 | 1.385706 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018740 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018810 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018830 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G018310 | SBH | 0.0 | 1.143957 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0018620 | RBH | 0.0 | 0.0 | 1.101253 |
