Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g36010 | OGI:05057730 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:21325499-21328295 | ||||||||
| Gene Symbol | OsSub47, SUB47 | ||||||||||
| DNA seq | ATGATGAACAGTATCAACAGCGGATTGCTTGGATCCATTGGCATACCTACAGACCATCTTTGTGCCACTCCTAATTATTCGACTCTCACGGGATATGGTCGATTCAGACCTAACAAATGATTGAATCAAAAGATAAGGAAAATGTGCTCCGCTTTATCCTTTTTGTCTTCCCATCATCAAACAGAAAAGAAAAAAAGAAATAGTAATGAACTGTTTCGAAAAACTAATAAATTGCATACACTGTCATCTTGAAGAATCTAGCTAACCTCCAATATTATCATTTCAAGTTTTCCTTTTGAAAAAATCATTTCAAAAGTTACAACATCTAAAACCGTTTTATCGTATGCTCTGCTGCTGACACACAAGTATTAGTTGCTTTTATTTGTTTTTGTTTTCCTTTTAAGTCGAACGGAAATGACTTATGAGAATGAGAGCGTAATCTAGTCACTGTGCAGGTGTCCTATAGCGGAGCCGAGCTCGCCGTCGTCGCCACAATCGGGCTCCTCACCGTGTACTTGCCGGCGTCGTCGACCCACGTCAGCGACCCATGGAGCACCTCGTCGGTCTTGTTCTTCATCTGCCCGCGGATCACCACCGTGTACTTCTGCGTCTCGTGCTTGCGGCCGAAGACCAGCCTCTCCGGCGAGACGCTCACCGTCAGCCCGCCCAGGCCCTTCACCTTGGCGCTGTAGCTCGCCGGCGCGTCGCCGACGTTGGTCACCGCCCTGGTGAACGTCCTCGCGGCCGGGGCGGTGGCGCCGGGGTCGAAGAACGCGATGAACGACGGGTAGTTGAGGTCCAGGGTCGCGCCGGCGCAGTCCACGGCGGAGGACGGCGACTGCGCCACGGTCTTGATCTGCGCCGCCGTGTAGTTCATGGCGCACATGAGCTTGACGTAGTCGTCGGCCCCGGCGTCGTAGACGAGGCCCGGGTCCACGGCGCGGTTGGGGTCGATGTGTCCCGAGCCCATCGCCAGCGGCGTCGCGCCGCGGTTGGCCCGCCCCATGTCCTTGATGGGCGCGTTGGTGTTGTCCACCGCGCTCGCCGTCGTCATCATCGCCGACCGCACCGCGGCGGGGCTCCACTCCGGGTGCACGGCCTTGATCAGCGCCGCCACCCCGGACGCGTGCGGGCACGACATGGACGTGCCGGAGATGACGTTGAAGCGGCTGTACAGCTGCTGGCTCCCAACGGTGGAGACGCTGACGTTCTCCGGCCACGAGGCGAGGATGAGAGAGCCCGGCGCGAGCACGTCGGGTTTGAGCACCGTCGGGCAGCTCGCCGACGGGCCGCGCGACGAGTACGTCGCCACCACCGGCGCCGGCTTGGTGCCCAGGATGGTCACCCCGAACTTGATCGACGCCCTGGGCGCGCGGCTCCTCTTGATGTACTGCAGCAGCGCGGGGGCATCCTGCGGGCTCAGTATCACGCCGGGGAAGGTGAAGTGCTCGGAGAGCTCCCTGAACGAGTCGTTGGAGAGGAACAGCCCGGCGCGCGCCTTGGCGACCTGCACCGCGAAAATGGCGGCGCTGAGGGAGTCCGTGGCGTCGCAGAGCACGACCTTGTCGCGGTTTCTCGCGAGCGCCGTGTCGTTGTCGCACGCGCCGAGGAAGACGAACCCGGAGCTCGCGATGGTGCTCGGGCTGCCTGGGTACATTGACTGGCCAATGACGGTCGTGCCGTCGCCGAGCCTGACGATGCCGGCGAACTCCCGGTCGCCCGTGCCCGACGCGACGGTGAGCGTCCACGGCGTGCCGTTGTGGAGGAAGCCGGGGTCGGGGCCGTCGTTACCGGCCGAGGTTGACACGAACACGCCGCGCTGCATCGCCGCGAAGGCGCCGATGGCGATGGGGTCTCGGTAGAACGGGACGTCGTTCAGGCCAAGGGAGAGGGAGAGGACGTCGACGCCGTCGGCGATGGCCTGGTCTATGGCGGCGAGTATGTCGGACGGGTACGTGCCTTCGTCCCACAGGGCCTTGTACATGGCCACCCTGGCGCGGGGCGCCATGCCGCGCGCGGTGCCGGGCGCGTAGCCGAAGAACGACGCGCCCGCCACGGGCGAGCCCGCGGCCGTGGACGACGTGTGCGTGCCGTGCCCGTCGGTGTCGCGCGGGGAGTTGACGGCGATGGTCAGGTTGGTCGCCGCGACGAGCCCCTTGTTGAACTTGCGCGCGCCGACGAGCTTCCGGTTGCACACCTTCCCGGCGTCGAACGCCGTGCCGGACTCGCAGTAGCCCTTCCACCGTGCCGGCACCGGCGGGAGCCCGTCGTCGCGGAAGCTCGCGCTCTCGGGCCACACGCCCGTGTCCACCACGCCGACGATGACGTCCTCGCCGTACTCCGACGCCTCCCACAGCCCGCCCGACGACGCGCTGACGCCGAGGAACTCCGGCGTGTGCGTCGTGTCACGCCTCACCGCCCTCGCGTCGTCGGGGTAGCACGACACGAAGCCCCTGGACCCCCTCAGCTTCTCCAGCTCGTCCGCGGTCACCCGCGCCGCGAAGCCGTGCATGGCGTTGTCGTACACGTAGAACATGTCGGCCCCGGGCGCCGCCGCGGCGAGGGTGGACTCGTACCAGCTCGCCTGGCTGGCGAACGCCCTCGGCATGGCCGACTTGTCCATGTGCACAATGTACGCCGCCGTATCGGCCGCCGACGTCAACCCCGGCGCCCAGCAAAACAACACGAGAAGAAGCCACATCAACGCCACCGCGTGGCAAATCCCGGGTACGACGGCGGTCGCCATGTCCGGCGATGAACTCCGGCACGTCGACGCGACCGTGGTACACTACACCGT
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| CDS seq | ATGGCGACCGCCGTCGTACCCGGGATTTGCCACGCGGTGGCGTTGATGTGGCTTCTTCTCGTGTTGTTTTGCTGGGCGCCGGGGTTGACGTCGGCGGCCGATACGGCGGCGTACATTGTGCACATGGACAAGTCGGCCATGCCGAGGGCGTTCGCCAGCCAGGCGAGCTGGTACGAGTCCACCCTCGCCGCGGCGGCGCCCGGGGCCGACATGTTCTACGTGTACGACAACGCCATGCACGGCTTCGCGGCGCGGGTGACCGCGGACGAGCTGGAGAAGCTGAGGGGGTCCAGGGGCTTCGTGTCGTGCTACCCCGACGACGCGAGGGCGGTGAGGCGTGACACGACGCACACGCCGGAGTTCCTCGGCGTCAGCGCGTCGTCGGGCGGGCTGTGGGAGGCGTCGGAGTACGGCGAGGACGTCATCGTCGGCGTGGTGGACACGGGCGTGTGGCCCGAGAGCGCGAGCTTCCGCGACGACGGGCTCCCGCCGGTGCCGGCACGGTGGAAGGGCTACTGCGAGTCCGGCACGGCGTTCGACGCCGGGAAGGTGTGCAACCGGAAGCTCGTCGGCGCGCGCAAGTTCAACAAGGGGCTCGTCGCGGCGACCAACCTGACCATCGCCGTCAACTCCCCGCGCGACACCGACGGGCACGGCACGCACACGTCGTCCACGGCCGCGGGCTCGCCCGTGGCGGGCGCGTCGTTCTTCGGCTACGCGCCCGGCACCGCGCGCGGCATGGCGCCCCGCGCCAGGGTGGCCATGTACAAGGCCCTGTGGGACGAAGGCACGTACCCGTCCGACATACTCGCCGCCATAGACCAGGCCATCGCCGACGGCGTCGACGTCCTCTCCCTCTCCCTTGGCCTGAACGACGTCCCGTTCTACCGAGACCCCATCGCCATCGGCGCCTTCGCGGCGATGCAGCGCGGCGTGTTCGTGTCAACCTCGGCCGGTAACGACGGCCCCGACCCCGGCTTCCTCCACAACGGCACGCCGTGGACGCTCACCGTCGCGTCGGGCACGGGCGACCGGGAGTTCGCCGGCATCGTCAGGCTCGGCGACGGCACGACCGTCATTGGCCAGTCAATGTACCCAGGCAGCCCGAGCACCATCGCGAGCTCCGGGTTCGTCTTCCTCGGCGCGTGCGACAACGACACGGCGCTCGCGAGAAACCGCGACAAGGTCGTGCTCTGCGACGCCACGGACTCCCTCAGCGCCGCCATTTTCGCGGTGCAGGTCGCCAAGGCGCGCGCCGGGCTGTTCCTCTCCAACGACTCGTTCAGGGAGCTCTCCGAGCACTTCACCTTCCCCGGCGTGATACTGAGCCCGCAGGATGCCCCCGCGCTGCTGCAGTACATCAAGAGGAGCCGCGCGCCCAGGGCGTCGATCAAGTTCGGGGTGACCATCCTGGGCACCAAGCCGGCGCCGGTGGTGGCGACGTACTCGTCGCGCGGCCCGTCGGCGAGCTGCCCGACGGTGCTCAAACCCGACGTGCTCGCGCCGGGCTCTCTCATCCTCGCCTCGTGGCCGGAGAACGTCAGCGTCTCCACCGTTGGGAGCCAGCAGCTGTACAGCCGCTTCAACGTCATCTCCGGCACGTCCATGTCGTGCCCGCACGCGTCCGGGGTGGCGGCGCTGATCAAGGCCGTGCACCCGGAGTGGAGCCCCGCCGCGGTGCGGTCGGCGATGATGACGACGGCGAGCGCGGTGGACAACACCAACGCGCCCATCAAGGACATGGGGCGGGCCAACCGCGGCGCGACGCCGCTGGCGATGGGCTCGGGACACATCGACCCCAACCGCGCCGTGGACCCGGGCCTCGTCTACGACGCCGGGGCCGACGACTACGTCAAGCTCATGTGCGCCATGAACTACACGGCGGCGCAGATCAAGACCGTGGCGCAGTCGCCGTCCTCCGCCGTGGACTGCGCCGGCGCGACCCTGGACCTCAACTACCCGTCGTTCATCGCGTTCTTCGACCCCGGCGCCACCGCCCCGGCCGCGAGGACGTTCACCAGGGCGGTGACCAACGTCGGCGACGCGCCGGCGAGCTACAGCGCCAAGGTGAAGGGCCTGGGCGGGCTGACGGTGAGCGTCTCGCCGGAGAGGCTGGTCTTCGGCCGCAAGCACGAGACGCAGAAGTACACGGTGGTGATCCGCGGGCAGATGAAGAACAAGACCGACGAGGTGCTCCATGGGTCGCTGACGTGGGTCGACGACGCCGGCAAGTACACGGTGAGGAGCCCGATTGTGGCGACGACGGCGAGCTCGGCTCCGCTATAG
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| Protein seq | MATAVVPGICHAVALMWLLLVLFCWAPGLTSAADTAAYIVHMDKSAMPRAFASQASWYESTLAAAAPGADMFYVYDNAMHGFAARVTADELEKLRGSRGFVSCYPDDARAVRRDTTHTPEFLGVSASSGGLWEASEYGEDVIVGVVDTGVWPESASFRDDGLPPVPARWKGYCESGTAFDAGKVCNRKLVGARKFNKGLVAATNLTIAVNSPRDTDGHGTHTSSTAAGSPVAGASFFGYAPGTARGMAPRARVAMYKALWDEGTYPSDILAAIDQAIADGVDVLSLSLGLNDVPFYRDPIAIGAFAAMQRGVFVSTSAGNDGPDPGFLHNGTPWTLTVASGTGDREFAGIVRLGDGTTVIGQSMYPGSPSTIASSGFVFLGACDNDTALARNRDKVVLCDATDSLSAAIFAVQVAKARAGLFLSNDSFRELSEHFTFPGVILSPQDAPALLQYIKRSRAPRASIKFGVTILGTKPAPVVATYSSRGPSASCPTVLKPDVLAPGSLILASWPENVSVSTVGSQQLYSRFNVISGTSMSCPHASGVAALIKAVHPEWSPAAVRSAMMTTASAVDNTNAPIKDMGRANRGATPLAMGSGHIDPNRAVDPGLVYDAGADDYVKLMCAMNYTAAQIKTVAQSPSSAVDCAGATLDLNYPSFIAFFDPGATAPAARTFTRAVTNVGDAPASYSAKVKGLGGLTVSVSPERLVFGRKHETQKYTVVIRGQMKNKTDEVLHGSLTWVDDAGKYTVRSPIVATTASSAPL |
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| Function | Subtilisin-like protease SBT3 [UniProtKB/Swiss-Prot:O82777] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g36010 | LOC_Os05g36010.1 | Chr05 | 21325499 | 21328295 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGACCGCCGTCGTACCCGGGATTTGCCACGCGGTGGCGTTGATGTGGCTTCTTCTCGTGTTGTTTTGCTGGGCGCCGGGGTTGACGTCGGCGGCCGATACGGCGGCGTACATTGTGCACATGGACAAGTCGGCCATGCCGAGGGCGTTCGCCAGCCAGGCGAGCTGGTACGAGTCCACCCTCGCCGCGGCGGCGCCCGGGGCCGACATGTTCTACGTGTACGACAACGCCATGCACGGCTTCGCGGCGCGGGTGACCGCGGACGAGCTGGAGAAGCTGAGGGGGTCCAGGGGCTTCGTGTCGTGCTACCCCGACGACGCGAGGGCGGTGAGGCGTGACACGACGCACACGCCGGAGTTCCTCGGCGTCAGCGCGTCGTCGGGCGGGCTGTGGGAGGCGTCGGAGTACGGCGAGGACGTCATCGTCGGCGTGGTGGACACGGGCGTGTGGCCCGAGAGCGCGAGCTTCCGCGACGACGGGCTCCCGCCGGTGCCGGCACGGTGGAAGGGCTACTGCGAGTCCGGCACGGCGTTCGACGCCGGGAAGGTGTGCAACCGGAAGCTCGTCGGCGCGCGCAAGTTCAACAAGGGGCTCGTCGCGGCGACCAACCTGACCATCGCCGTCAACTCCCCGCGCGACACCGACGGGCACGGCACGCACACGTCGTCCACGGCCGCGGGCTCGCCCGTGGCGGGCGCGTCGTTCTTCGGCTACGCGCCCGGCACCGCGCGCGGCATGGCGCCCCGCGCCAGGGTGGCCATGTACAAGGCCCTGTGGGACGAAGGCACGTACCCGTCCGACATACTCGCCGCCATAGACCAGGCCATCGCCGACGGCGTCGACGTCCTCTCCCTCTCCCTTGGCCTGAACGACGTCCCGTTCTACCGAGACCCCATCGCCATCGGCGCCTTCGCGGCGATGCAGCGCGGCGTGTTCGTGTCAACCTCGGCCGGTAACGACGGCCCCGACCCCGGCTTCCTCCACAACGGCACGCCGTGGACGCTCACCGTCGCGTCGGGCACGGGCGACCGGGAGTTCGCCGGCATCGTCAGGCTCGGCGACGGCACGACCGTCATTGGCCAGTCAATGTACCCAGGCAGCCCGAGCACCATCGCGAGCTCCGGGTTCGTCTTCCTCGGCGCGTGCGACAACGACACGGCGCTCGCGAGAAACCGCGACAAGGTCGTGCTCTGCGACGCCACGGACTCCCTCAGCGCCGCCATTTTCGCGGTGCAGGTCGCCAAGGCGCGCGCCGGGCTGTTCCTCTCCAACGACTCGTTCAGGGAGCTCTCCGAGCACTTCACCTTCCCCGGCGTGATACTGAGCCCGCAGGATGCCCCCGCGCTGCTGCAGTACATCAAGAGGAGCCGCGCGCCCAGGGCGTCGATCAAGTTCGGGGTGACCATCCTGGGCACCAAGCCGGCGCCGGTGGTGGCGACGTACTCGTCGCGCGGCCCGTCGGCGAGCTGCCCGACGGTGCTCAAACCCGACGTGCTCGCGCCGGGCTCTCTCATCCTCGCCTCGTGGCCGGAGAACGTCAGCGTCTCCACCGTTGGGAGCCAGCAGCTGTACAGCCGCTTCAACGTCATCTCCGGCACGTCCATGTCGTGCCCGCACGCGTCCGGGGTGGCGGCGCTGATCAAGGCCGTGCACCCGGAGTGGAGCCCCGCCGCGGTGCGGTCGGCGATGATGACGACGGCGAGCGCGGTGGACAACACCAACGCGCCCATCAAGGACATGGGGCGGGCCAACCGCGGCGCGACGCCGCTGGCGATGGGCTCGGGACACATCGACCCCAACCGCGCCGTGGACCCGGGCCTCGTCTACGACGCCGGGGCCGACGACTACGTCAAGCTCATGTGCGCCATGAACTACACGGCGGCGCAGATCAAGACCGTGGCGCAGTCGCCGTCCTCCGCCGTGGACTGCGCCGGCGCGACCCTGGACCTCAACTACCCGTCGTTCATCGCGTTCTTCGACCCCGGCGCCACCGCCCCGGCCGCGAGGACGTTCACCAGGGCGGTGACCAACGTCGGCGACGCGCCGGCGAGCTACAGCGCCAAGGTGAAGGGCCTGGGCGGGCTGACGGTGAGCGTCTCGCCGGAGAGGCTGGTCTTCGGCCGCAAGCACGAGACGCAGAAGTACACGGTGGTGATCCGCGGGCAGATGAAGAACAAGACCGACGAGGTGCTCCATGGGTCGCTGACGTGGGTCGACGACGCCGGCAAGTACACGGTGAGGAGCCCGATTGTGGCGACGACGGCGAGCTCGGCTCCGCTATAG
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| Protein seq | MATAVVPGICHAVALMWLLLVLFCWAPGLTSAADTAAYIVHMDKSAMPRAFASQASWYESTLAAAAPGADMFYVYDNAMHGFAARVTADELEKLRGSRGFVSCYPDDARAVRRDTTHTPEFLGVSASSGGLWEASEYGEDVIVGVVDTGVWPESASFRDDGLPPVPARWKGYCESGTAFDAGKVCNRKLVGARKFNKGLVAATNLTIAVNSPRDTDGHGTHTSSTAAGSPVAGASFFGYAPGTARGMAPRARVAMYKALWDEGTYPSDILAAIDQAIADGVDVLSLSLGLNDVPFYRDPIAIGAFAAMQRGVFVSTSAGNDGPDPGFLHNGTPWTLTVASGTGDREFAGIVRLGDGTTVIGQSMYPGSPSTIASSGFVFLGACDNDTALARNRDKVVLCDATDSLSAAIFAVQVAKARAGLFLSNDSFRELSEHFTFPGVILSPQDAPALLQYIKRSRAPRASIKFGVTILGTKPAPVVATYSSRGPSASCPTVLKPDVLAPGSLILASWPENVSVSTVGSQQLYSRFNVISGTSMSCPHASGVAALIKAVHPEWSPAAVRSAMMTTASAVDNTNAPIKDMGRANRGATPLAMGSGHIDPNRAVDPGLVYDAGADDYVKLMCAMNYTAAQIKTVAQSPSSAVDCAGATLDLNYPSFIAFFDPGATAPAARTFTRAVTNVGDAPASYSAKVKGLGGLTVSVSPERLVFGRKHETQKYTVVIRGQMKNKTDEVLHGSLTWVDDAGKYTVRSPIVATTASSAPL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.347525 | 0.120414 | 0.164755 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0435800 | RBH | 0.498956 | 0.196604 | 0.702847 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g64860 | RBH | 0.0 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0435800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018420 | RBH | 0.0 | 1.584369 | 1.699842 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018390 | RBH | 0.045930 | 7.426174 | 0.855491 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0018250 | RBH | 0.0 | 4.363478 | 1.684997 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018270 | RBH | 0.0 | 0.434129 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018500 | RBH | 0.0 | 24.418739 | 1.103941 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0327900 | RBH | 6.3385435 | 0.671755 | 0.7609025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0018020 | RBH | 0.069071 | 0.507761 | 0.175232 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0339600 | RBH | 5.456282 | 0 | 0.0392335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0018320 | RBH | 0.029619 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0018260 | RBH | 0.0 | 5.050946 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018390 | RBH | 0.0 | 11.287532 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018440 | RBH | 0.065901 | 0.681396 | 0.616749 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018440 | RBH | 0.0 | 3.024925 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G017950 | RBH | 0.0 | 5.018402 | 0.317164 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0018230 | RBH | 0.339264 | 5.606473 | 2.146521 |
