Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g34270 | OGI:05054740 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:20283253-20287008 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAGCATGAAAAGAAGCTTTTATAGACCAAGAAAAAAAATAGTTTCAACCAGCAAAAGCTATACTACATTTACAAAAGACAATGACCCACTACTCTTACACTGCAAGTTGAAATAATGAAATTCCCAAGTTTGCTTGCATACTCAGGTGCACTTTGGCTGGAAGACATCATAAGGTGGCATTCCACACATTTTGACGTTCAGTATTCCTCATCCCGTGGCGTAAGTACAAATGACATCATGAAAAATGACTGAATAAATGCCAATATGGCATATTCCCATCACATGAGGAGCAAACTACTATTAGGAGTAGTTAATACCCCATCCCCATATCGGTTGAGTGAAAGATCATCATTGCTGCTGCTAGCACCTCCCAATGGTAGATAACAACAAGCTACAAAAATTATACAGCGGATGCAGTATACTGATACTACTTAATAGTACATCATGTAAAGCCACCTCACTCATCTAAGCATGGTAATGACGCGCAGAAGAAACAACCTCCACTTGGTTGCCTTCTGTGGAACATTGGGTTTGCAGTTACTGGGCAACAATGAGCTCGTCAAGGGTTTCTCCATCTGTGCTTAGAGGTGGCAGCATCATCAAGTCATCCTCCGCCGAGAAATGGTACTTTTCTCCAATGGCTCTGAGGAGCTGATAGACCTCAAACATTGTCGGTCTCTCCTTTGGAGTGGAAATTGTGCAAGAACATGCGACTTTCAGAAATTGCATTAGCTCGCCGTCACTGCCCTTCCCTATCAATGACTTGTCAACGGCATCTTGGAGGAGGGCATTGTTTGATAGGTAGTTGATCCACTCTACTAGGCTCCCTCTGAAATTCTCCGGTGCAGTTGAAACATGAGTAGGCCTCTCGCCGGTGATAAGCTCAAGAAGAACAACACCGAAGCTGTACACATCACCCTTTGGCGTGGCCACCAGAGTACGTGCATACTCTGGTGCCACATAACCAAGATCTCCAAATTCTCCATTAACAAAGGTGCTAAGGTGGGTGTCTATTGGATTCATAAGCCTAGCAAGTCCAAAATCTGATATCTTTGGTTCGTAGTCCTCATCTAGGAGGATGCACTTGGAGCTTATATTGCGGTGAAGGACTCGAGGATTGCAAGTGTGATGAAGATACGCAAGACCTTTTGCTGCACCAATGCCGATTCTTAACCTCAGAGTCCAATCCATCTTACAGTCTTTGCCTTCTTCTTGATTTAACTGATCATAGAGTGAACCTTTCGGCATGTGCTTGTACACCAACAACCTCTCCCTCTTAGCAATGCAAAATCCTAGGAGAGGAACTAAGTTGCGATGCCTTACTTGGCCAAGTGTCTTCATCTCCGACGTGAATTGAGTTTCAGAATGTTGAGAATCTTGTAGCCTTTTGACAGCAAGAAAAGAACCATCAGGTAGCACTGCCCTGTACATAGTTCCTGTTCTCCCAGTACCTATGATGTTCTCTTTGCAAAATTCATTGGTAGCCTTCATAAGATCGCTTAGTTTCATCTTTGAAACTGGATTCTCGAACATAGAAACCTGAATAATTGAAAAGGCCATGACAGTAAGAAGTTTACGTTAGCTTCTTTTACGAATAATGTTACACAAAATTTCTTTTGTATTATAAAAGAAAAGGGAAATAAATAGTAATAGTAGGGTATTTTCACCTTGATGGTTTTAGTTCCTTTGATACTCTTTGCCCACTTATTTTCTTCCTCGACCTTTGGCTTCTTGGCTGGTAATTTCCGCAGACAAAAGAATACGATTATTACGCCAATTATGATCACAACTACAACACCAACAACAGCTCCAATGATTGCTGCATTGTTCTTGCTCTTTGCTGAAGCTTGGCAGCCATCCAATGGTAGCCCACAAAGGCCTTGATTACCAGCAAAATTTGATGACGGAAATTTATTTAGATTATTTGGAATAGGCCCTGATAGTCGGTTCTCTGCAACATTGAATGATGTTAACCGACCAAGAAGATTGAACTGCAGTGGAATTTGACCAGTGAACTGGTTATGTTGGAGATTGAGTGTGTTTAAATATGTCATATTTGAAATATTTACTGGGATTTGGCCTGAAAACCTATTGTAGGAGAGGTCCAGTGATGTCAAGTATGGTATTTGCTGGGAGATGTCCTGAGGAATGAGTCCTGTAAAGTTGTTACTCGACAGATCTAGCCCAGTCATACTAGTACAGTTCTGAAGGCCTGCAGGAAATGGACCCTGAAGACCAAGGTTGCCGAGACGCAAAGAAAGAACTCGGTTCTCATCTGGATGCCAACATTCCACCCCAGTAAATTTGCAGATGTAACCAGGGGTGCCGTTGTTGACAAAACTCCATGAGGATTTGAGTATACCATTGGGATCGGTCACTGACTGGAATATGGTTTTCAAGCACTGAACATCAAGTTCAGAGCCAAAACAGGTGGCACTCAATATCAAGAGAAGAATAAGCCTCAGAGGAGCATAATAATGATCTGTCATCGAGCACTTGCTGCGGATTAATGCCACCTCTCCTTGACGATGAGAAATGGCACTTCAAAATTAGCAGTCGCCTGCAAGAATCAATAACACCATGTCACGAAATTACAGGTAAACATACGATGCTCTAGCCTGAAAGTTAGTGTGCCACAGTATAATTATCCTAGTACGATGGAAATTGTGACTTAATTTATGATAGTAACAACAACATCAAAGAATCCCAACTGTAAGCAGCCAACATCACTACATCAGTAGAGAACTGATCCCCACCTTAGACAAAGCAAATCACACAAGCGGTAAACTTTCTAATTATTAAGATAGGCAAAAGGAAGAACAAGTAGATGCATGAATGAGAACGAGTAACAAAGAATCGTCTACTGGAAGCAGGTTCTAACACACAAAACCATCGTTCTATGCCTCAATCAATTCTATTTTAGAGCGATCAAAAGGTCTCTAATTTTAATATCTCGGCTTCTCTCGTGTCTCAAAAAGGCGCCCTACTTTTGTTGCGAAAAAAATCTAACGAGGAAAAAAATATCCCCCAAAAGAAGGCACCACCACCATCCAAACAAACAAACACTATCTTTTCTCTTCGATCTCGCACCAAAAGTGGTCAGGCACTCCGGCCGCCCTTCTCCGCCACTCGAAATGATTCGCGTATGATCATCAAAAATCCCCAAGCGGATGAGTCCTGGACGAACCCTTGGTCCTCCTCAAGAAACCCACGCATCGGCAACAACAACAGCAGCAATACGAACAGAATTCCTCTCCCCTAATTCCATCGCCGTACTACCACTCTACCAGCACCCCCGAAATTCACCTCTCCATCCTTGCATAACAATTCCGGGTCCGGGAGATCCTCCTGCGCTCCAAGAACACTAAACCGCAAAACCACTCACGAAGATCATATCCACTGTACACCCCCAAATAAAGCCCCACAAGAACACACCAAGGCACAAGAACAAGAATTAAAAAGCAGAGCTCGTCTCACCTGAAGAAGCAGGAGGAAGGGAGCCCGCACACCCGAAGACGAGGAGCGGAGGAGGCGAATGAACAACGAGATAGTTACGACGATGGTGGGAGAAGGAAGACTTGGACGCGGGGGGCAGAGGAGGGAGGGGAGGGGAGGCAGGCCGTCAAAAGAGAAGGCGAGGACGACGACGACGAGGAGTAGTACTACTACTACTAATCCCTACTAGGCGTAGGCGAGAGATTTTCTTTTTTTTTTTTGGTTCAAGGGGTGGTGGGGCCCTGGGGGAGAGGGACGTTT
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| CDS seq | ATGACAGATCATTATTATGCTCCTCTGAGGCTTATTCTTCTCTTGATATTGAGTGCCACCTGTTTTGGCTCTGAACTTGATGTTCAGTGCTTGAAAACCATATTCCAGTCAGTGACCGATCCCAATGGTATACTCAAATCCTCATGGAGTTTTGTCAACAACGGCACCCCTGGTTACATCTGCAAATTTACTGGGGTGGAATGTTGGCATCCAGATGAGAACCGAGTTCTTTCTTTGCGTCTCGGCAACCTTGGTCTTCAGGGTCCATTTCCTGCAGGCCTTCAGAACTGTACTAGTATGACTGGGCTAGATCTGTCGAGTAACAACTTTACAGGACTCATTCCTCAGGACATCTCCCAGCAAATACCATACTTGACATCACTGGACCTCTCCTACAATAGGTTTTCAGGCCAAATCCCAGTAAATATTTCAAATATGACATATTTAAACACACTCAATCTCCAACATAACCAGTTCACTGGTCAAATTCCACTGCAGTTCAATCTTCTTGGTCGGTTAACATCATTCAATGTTGCAGAGAACCGACTATCAGGGCCTATTCCAAATAATCTAAATAAATTTCCGTCATCAAATTTTGCTGGTAATCAAGGCCTTTGTGGGCTACCATTGGATGGCTGCCAAGCTTCAGCAAAGAGCAAGAACAATGCAGCAATCATTGGAGCTGTTGTTGGTGTTGTAGTTGTGATCATAATTGGCGTAATAATCGTATTCTTTTGTCTGCGGAAATTACCAGCCAAGAAGCCAAAGGTCGAGGAAGAAAATAAGTGGGCAAAGAGTATCAAAGGAACTAAAACCATCAAGGTTTCTATGTTCGAGAATCCAGTTTCAAAGATGAAACTAAGCGATCTTATGAAGGCTACCAATGAATTTTGCAAAGAGAACATCATAGGTACTGGGAGAACAGGAACTATGTACAGGGCAGTGCTACCTGATGGTTCTTTTCTTGCTGTCAAAAGGCTACAAGATTCTCAACATTCTGAAACTCAATTCACGTCGGAGATGAAGACACTTGGCCAAGTAAGGCATCGCAACTTAGTTCCTCTCCTAGGATTTTGCATTGCTAAGAGGGAGAGGTTGTTGGTGTACAAGCACATGCCGAAAGGTTCACTCTATGATCAGTTAAATCAAGAAGAAGGCAAAGACTGTAAGATGGATTGGACTCTGAGGTTAAGAATCGGCATTGGTGCAGCAAAAGGTCTTGCGTATCTTCATCACACTTGCAATCCTCGAGTCCTTCACCGCAATATAAGCTCCAAGTGCATCCTCCTAGATGAGGACTACGAACCAAAGATATCAGATTTTGGACTTGCTAGGCTTATGAATCCAATAGACACCCACCTTAGCACCTTTGTTAATGGAGAATTTGGAGATCTTGGTTATGTGGCACCAGAGTATGCACGTACTCTGGTGGCCACGCCAAAGGGTGATGTGTACAGCTTCGGTGTTGTTCTTCTTGAGCTTATCACCGGCGAGAGGCCTACTCATGTTTCAACTGCACCGGAGAATTTCAGAGGGAGCCTAGTAGAGTGGATCAACTACCTATCAAACAATGCCCTCCTCCAAGATGCCGTTGACAAGTCATTGATAGGGAAGGGCAGTGACGGCGAGCTAATGCAATTTCTGAAAGTCGCATGTTCTTGCACAATTTCCACTCCAAAGGAGAGACCGACAATGTTTGAGGTCTATCAGCTCCTCAGAGCCATTGGAGAAAAGTACCATTTCTCGGCGGAGGATGACTTGATGATGCTGCCACCTCTAAGCACAGATGGAGAAACCCTTGACGAGCTCATTGTTGCCCAGTAA
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| Protein seq | MTDHYYAPLRLILLLILSATCFGSELDVQCLKTIFQSVTDPNGILKSSWSFVNNGTPGYICKFTGVECWHPDENRVLSLRLGNLGLQGPFPAGLQNCTSMTGLDLSSNNFTGLIPQDISQQIPYLTSLDLSYNRFSGQIPVNISNMTYLNTLNLQHNQFTGQIPLQFNLLGRLTSFNVAENRLSGPIPNNLNKFPSSNFAGNQGLCGLPLDGCQASAKSKNNAAIIGAVVGVVVVIIIGVIIVFFCLRKLPAKKPKVEEENKWAKSIKGTKTIKVSMFENPVSKMKLSDLMKATNEFCKENIIGTGRTGTMYRAVLPDGSFLAVKRLQDSQHSETQFTSEMKTLGQVRHRNLVPLLGFCIAKRERLLVYKHMPKGSLYDQLNQEEGKDCKMDWTLRLRIGIGAAKGLAYLHHTCNPRVLHRNISSKCILLDEDYEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGVVLLELITGERPTHVSTAPENFRGSLVEWINYLSNNALLQDAVDKSLIGKGSDGELMQFLKVACSCTISTPKERPTMFEVYQLLRAIGEKYHFSAEDDLMMLPPLSTDGETLDELIVAQ |
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| Function | Probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 [UniProtKB/Swiss-Prot:Q9ASS4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g34270 | LOC_Os05g34270.1 | Chr05 | 20283253 | 20287008 | - | MSU_osa1r7 | ||
| CDS seq | ATGACAGATCATTATTATGCTCCTCTGAGGCTTATTCTTCTCTTGATATTGAGTGCCACCTGTTTTGGCTCTGAACTTGATGTTCAGTGCTTGAAAACCATATTCCAGTCAGTGACCGATCCCAATGGTATACTCAAATCCTCATGGAGTTTTGTCAACAACGGCACCCCTGGTTACATCTGCAAATTTACTGGGGTGGAATGTTGGCATCCAGATGAGAACCGAGTTCTTTCTTTGCGTCTCGGCAACCTTGGTCTTCAGGGTCCATTTCCTGCAGGCCTTCAGAACTGTACTAGTATGACTGGGCTAGATCTGTCGAGTAACAACTTTACAGGACTCATTCCTCAGGACATCTCCCAGCAAATACCATACTTGACATCACTGGACCTCTCCTACAATAGGTTTTCAGGCCAAATCCCAGTAAATATTTCAAATATGACATATTTAAACACACTCAATCTCCAACATAACCAGTTCACTGGTCAAATTCCACTGCAGTTCAATCTTCTTGGTCGGTTAACATCATTCAATGTTGCAGAGAACCGACTATCAGGGCCTATTCCAAATAATCTAAATAAATTTCCGTCATCAAATTTTGCTGGTAATCAAGGCCTTTGTGGGCTACCATTGGATGGCTGCCAAGCTTCAGCAAAGAGCAAGAACAATGCAGCAATCATTGGAGCTGTTGTTGGTGTTGTAGTTGTGATCATAATTGGCGTAATAATCGTATTCTTTTGTCTGCGGAAATTACCAGCCAAGAAGCCAAAGGTCGAGGAAGAAAATAAGTGGGCAAAGAGTATCAAAGGAACTAAAACCATCAAGGTTTCTATGTTCGAGAATCCAGTTTCAAAGATGAAACTAAGCGATCTTATGAAGGCTACCAATGAATTTTGCAAAGAGAACATCATAGGTACTGGGAGAACAGGAACTATGTACAGGGCAGTGCTACCTGATGGTTCTTTTCTTGCTGTCAAAAGGCTACAAGATTCTCAACATTCTGAAACTCAATTCACGTCGGAGATGAAGACACTTGGCCAAGTAAGGCATCGCAACTTAGTTCCTCTCCTAGGATTTTGCATTGCTAAGAGGGAGAGGTTGTTGGTGTACAAGCACATGCCGAAAGGTTCACTCTATGATCAGTTAAATCAAGAAGAAGGCAAAGACTGTAAGATGGATTGGACTCTGAGGTTAAGAATCGGCATTGGTGCAGCAAAAGGTCTTGCGTATCTTCATCACACTTGCAATCCTCGAGTCCTTCACCGCAATATAAGCTCCAAGTGCATCCTCCTAGATGAGGACTACGAACCAAAGATATCAGATTTTGGACTTGCTAGGCTTATGAATCCAATAGACACCCACCTTAGCACCTTTGTTAATGGAGAATTTGGAGATCTTGGTTATGTGGCACCAGAGTATGCACGTACTCTGGTGGCCACGCCAAAGGGTGATGTGTACAGCTTCGGTGTTGTTCTTCTTGAGCTTATCACCGGCGAGAGGCCTACTCATGTTTCAACTGCACCGGAGAATTTCAGAGGGAGCCTAGTAGAGTGGATCAACTACCTATCAAACAATGCCCTCCTCCAAGATGCCGTTGACAAGTCATTGATAGGGAAGGGCAGTGACGGCGAGCTAATGCAATTTCTGAAAGTCGCATGTTCTTGCACAATTTCCACTCCAAAGGAGAGACCGACAATGTTTGAGGTCTATCAGCTCCTCAGAGCCATTGGAGAAAAGTACCATTTCTCGGCGGAGGATGACTTGATGATGCTGCCACCTCTAAGCACAGATGGAGAAACCCTTGACGAGCTCATTGTTGCCCAGTAA
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| Protein seq | MTDHYYAPLRLILLLILSATCFGSELDVQCLKTIFQSVTDPNGILKSSWSFVNNGTPGYICKFTGVECWHPDENRVLSLRLGNLGLQGPFPAGLQNCTSMTGLDLSSNNFTGLIPQDISQQIPYLTSLDLSYNRFSGQIPVNISNMTYLNTLNLQHNQFTGQIPLQFNLLGRLTSFNVAENRLSGPIPNNLNKFPSSNFAGNQGLCGLPLDGCQASAKSKNNAAIIGAVVGVVVVIIIGVIIVFFCLRKLPAKKPKVEEENKWAKSIKGTKTIKVSMFENPVSKMKLSDLMKATNEFCKENIIGTGRTGTMYRAVLPDGSFLAVKRLQDSQHSETQFTSEMKTLGQVRHRNLVPLLGFCIAKRERLLVYKHMPKGSLYDQLNQEEGKDCKMDWTLRLRIGIGAAKGLAYLHHTCNPRVLHRNISSKCILLDEDYEPKISDFGLARLMNPIDTHLSTFVNGEFGDLGYVAPEYARTLVATPKGDVYSFGVVLLELITGERPTHVSTAPENFRGSLVEWINYLSNNALLQDAVDKSLIGKGSDGELMQFLKVACSCTISTPKERPTMFEVYQLLRAIGEKYHFSAEDDLMMLPPLSTDGETLDELIVAQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.726081 | 4.038203 | 0.931142 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0414700 | RBH | 7.437379 | 6.582373 | 3.983454 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g66740 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0414700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017200 | RBH | 0.890198 | 20.735411 | 3.855985 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017200 | RBH | 0.541538 | 0.793657 | 2.798559 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0017010 | RBH | 2.811688 | 5.756034 | 5.802921 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0017040 | RBH | 0.707107 | 0.195824 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0017230 | RBH | 11.155533 | 7.650884 | 14.327068 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0310400 | RBH | 7.5793185 | 33.834139 | 13.0712065 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0016730 | RBH | 1.023379 | 0.733327 | 1.078259 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0319600 | RBH | 9.179657 | 38.1920455 | 7.8888105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0017080 | RBH | 0.889207 | 0.134611 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0016960 | RBH | 1.071901 | 9.478888 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0017100 | RBH | 10.801931 | 9.311361 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0017130 | RBH | 1.716776 | 0.881563 | 0.933994 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0017170 | RBH | 0.453459 | 2.261895 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G016650 | RBH | 1.476199 | 0.000000 | 1.613059 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0016960 | RBH | 3.157789 | 25.053310 | 7.237825 |
