Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g33120 | OGI:05052530 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:19418190-19420855 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTTGTGAATTTTTTCTCTGGAAGCTTCACCCCTTCAGTATTGCTATCGTTATTTACATATACATGAGTAGATGGGCCTCTAGCTGATGGGCCAGCACACAAACACACACACACACACACTATTCTATTTACAGCCCAACACTCCCCCTCAAGATGGGTGATAGATATCTATCATACCCATCTTGTCACACGAACGATTACACTCTTTAACACCTAAACCCTTTGTTAAACAATCAGCAACTTGTCCACTAGACGTTACAAATTCTAATTCCAAAACTCCCTCATCCAGTTTTTCCTTGATAAAGAAACGATCCAACTCCACATGCTTTGTTCGATCATGCTGAACTGGGTTGTTAGCAATGTTGATTGCTGACTTGTTGTCACACCACAATTTCATGGGAGTATCCACCGACAACTTTAACTCAGAAAGAAGATTCCTTAGCCATAACAACTCACTCAAACTCACTGACATTGCCCGATATTCTGCCTCAGCAGTTGAGCGAGACACCACCGGTTGCTTCTTGCTCCTCCAAGATACTAAATTGCCACCAACAAACACACAATAGCCTGAAGTTGATCTTCTATCATCAGGACAACTTGCCCAATCTGCATCACAATAGCCTTCAACCTCCAAGTGTCCATTTTTCTTAAACCATAGGCCTTTACCTGGGCTTCCCTTCAAATATCTCAAGATCCTATAGACCGCATCCATATGACCACTCCTTGGATCATGCATATATCGACTCACCATACTGACAGCATAAGTTATGTCAGGTCGTGTATGACACAAATATATCAGTCTTCCCACCAATCTTTGGTATCTTTCCTTATTCACTGGATTTCCAGACTCTGCACATAATTTATGATTTTGATCAATTGGTGTAGAGGCTGGGCGACATCCAAGCATACCTGTGTCACTGAGCAAATCCAATGCATATTTCCGTTGTGACAGAACTATCCCTCTAGGAGATCTTGCAATTTCAATACCCAGAAAATATTTCAACTGGCCTAGGTCCTTAACTTCAAATTCTTTGCTTAGATTCTGTTTCAACCTAGTTATCTCCAAGCAATCATTCCCAGTGATAATCATATCATCAACATAGACAGCAAGGATGGTTATATGATCTCCACTATGATGATAAAAAACTGTATGATCTCCATTACATTGCTTATAGTCCATAGCACACATTGCACGCCTAAACCGATCAAATCATGCTCTTGGTGATTGTTTAAGACCATACAAAGATTTCTTCAATCTCAGCACCTTTCCTTCAGTTTGTGAAGTAGCAAATCCCGGTGGGATATCCATATACACCTCTTCTTGAAGATCTCCATGTAAAAATGCATTCTTGACATCTAGCTGATGCAATGGCCAATCAAAATTAGCTGCACAAGATATGAGAGTTCTTACCGTGCTCATCTTTGCTACTGGTGCAAAAGTTTCATCATAATCAATTCCATATGTTTGACTATATCCCTTAGCCACCAGCCTTGCTTTGTATCTTTCCACCTTTCCATTAGGATTTTGCTTTACTGTATAAACCCACTTACAGTTGACAACTTTCTTTCCTTCAGGAAATGGTACAAGATCCCATGTTTTGTTCTTTTCAAGAGCCTCTAGTTCATCTAACATAGCTTGATGCCACCTTGGATCTTGCTTTGCTTCTCTCCAATCCTTTGGGATTTCCATTGAATCTAGTGATGCTACAAAGGCTTTATATGTGGATGACAAGGAGTCATAGGAAACAAAGTTGGATATATTATTTTCTTCATCACCCTCATCTTGATCTTCAAAACCATACCTTAGTGGAGGTTTACCTGCATTGCTTCTCACACTCTTTCTGACAGCAATTGGTAAGTCAGATTCTTCTCTAACTTCCTCTTCTTCTCCCCCTGACTCCAAAGACCCTTGCTCATGATTTACATCTTTCTCTACCTGATTATCCTCTTCAACTTGTTGGATTACTGGACACCTTGTTCTCCTTGTGTATACTTGAAGATTTTCCTCTTCATGTGGCTTCCTCCATTCTTGCTCTTGTGCAACAGGACCACCCATAGGACATGGAATTGAACCAACCACAAACTTTTCCTTCTTTGATTGTTCATCTCCCTTTGGACCCAATATTTCACCTTCCATCTGTTGACCATCATGACCACTAGTTGAATTATCAAGATCAACGAATAAAGAACTTAAATCTGTCTTCTCACCGTAGAATGGGACAGATTCTCTAAAAGTAACATCCATACTAACAAAGGTTCGTCGTTCTGATGGACTCCAACACTTATACCCCTTCTGGCCAGATGGATAGCCTATAAAGATGCATTTGACAGCCCGAGGATCAAGTTTTCCAACGGAAGGTCTATGATCTCTAACAAAACAAGTGCAACCAAACACTTTTGGTGGAACAACAAATTCATTCTTTCCAAATATCATCTCACATGGTGTCTGCATTCCAAGTATCCTTGATGGCGTGCGGTTGATAAGATAAGTTGCTGTCATTACTGCCTCACTCCATAAGAATTTAGGTACATTCATAGCATACATCAATGAGCGAGCTGTCTCCAAAAGATGACGGTTTTTTCTCTCAGCCACCCCATTTTGTGGAGGAGTATCAGGACAAGAAGTTTGATGCAATATTCCTTCTGATGAAAGAAAGCTACTAAATT
More
|
||||||||||
| CDS seq | ATGTATGCTATGAATGTACCTAAATTCTTATGGAGTGAGGCAGTAATGACAGCAACTTATCTTATCAACCGCACGCCATCAAGGATACTTGGAATGCAGACACCATGTGAGATGATATTTGGAAAGAATGAATTTGTTGTTCCACCAAAAGTGTTTGGTTGCACTTGTTTTGTTAGAGATCATAGACCTTCCGTTGGAAAACTTGATCCTCGGGCTGTCAAATGCATCTTTATAGGCTATCCATCTGGCCAGAAGGGGTATAAGTGTTGGAGTCCATCAGAACGACGAACCTTTGTTAGTATGGATGTTACTTTTAGAGAATCTGTCCCATTCTACGGTGAGAAGACAGATTTAAGTTCTTTATTCGTTGATCTTGATAATTCAACTAGTGGTCATGATGGTCAACAGATGGAAGGTGAAATATTGGGTCCAAAGGGAGATGAACAATCAAAGAAGGAAAAGTTTGTGGTTGGTTCAATTCCATGTCCTATGGGTGGTCCTGTTGCACAAGAGCAAGAATGGAGGAAGCCACATGAAGAGGAAAATCTTCAAGTATACACAAGGAGAACAAGGTGTCCAGTAATCCAACAAGTTGAAGAGGATAATCAGGTAGAGAAAGATGTAAATCATGAGCAAGGGTCTTTGGAGTCAGGGGGAGAAGAAGAGGAAGTTAGAGAAGAATCTGACTTACCAATTGCTGTCAGAAAGAGTGTGAGAAGCAATGCAGGTAAACCTCCACTAAGGTATGGTTTTGAAGATCAAGATGAGGGTGATGAAGAAAATAATATATCCAACTTTGTTTCCTATGACTCCTTGTCATCCACATATAAAGCCTTTGTAGCATCACTAGATTCAATGGAAATCCCAAAGGATTGGAGAGAAGCAAAGCAAGATCCAAGGTGGCATCAAGCTATGTTAGATGAACTAGAGGCTCTTGAAAAGAACAAAACATGGGATCTTGTACCATTTCCTGAAGGAAAGAAAGTTGTCAACTGTAAGTGGGTTTATACAGTAAAGCAAAATCCTAATGGAAAGGTGGAAAGATACAAAGCAAGGCTGGTGGCTAAGGGATATAGTCAAACATATGGAATTGATTATGATGAAACTTTTGCACCAGTAGCAAAGATGAGCACGGTAAGAACTCTCATATCTTGTGCAGCTAATTTTGATTGGCCATTGCATCAGCTAGATGTCAAGAATGCATTTTTACATGGAGATCTTCAAGAAGAGGTGTATATGGATATCCCACCGGGATTTGCTACTTCACAAACTGAAGGAAAGGTGCTGAGATTGAAGAAATCTTTGTATGGTCTTAAACAATCACCAAGAGCATGA
More
|
||||||||||
| Protein seq | MYAMNVPKFLWSEAVMTATYLINRTPSRILGMQTPCEMIFGKNEFVVPPKVFGCTCFVRDHRPSVGKLDPRAVKCIFIGYPSGQKGYKCWSPSERRTFVSMDVTFRESVPFYGEKTDLSSLFVDLDNSTSGHDGQQMEGEILGPKGDEQSKKEKFVVGSIPCPMGGPVAQEQEWRKPHEEENLQVYTRRTRCPVIQQVEEDNQVEKDVNHEQGSLESGGEEEEVREESDLPIAVRKSVRSNAGKPPLRYGFEDQDEGDEENNISNFVSYDSLSSTYKAFVASLDSMEIPKDWREAKQDPRWHQAMLDELEALEKNKTWDLVPFPEGKKVVNCKWVYTVKQNPNGKVERYKARLVAKGYSQTYGIDYDETFAPVAKMSTVRTLISCAANFDWPLHQLDVKNAFLHGDLQEEVYMDIPPGFATSQTEGKVLRLKKSLYGLKQSPRA |
||||||||||
| Function | Copia protein [UniProtKB/Swiss-Prot:P04146] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g33120 | LOC_Os05g33120.1 | Chr05 | 19418190 | 19420855 | - | MSU_osa1r7 | ||
| CDS seq | ATGTATGCTATGAATGTACCTAAATTCTTATGGAGTGAGGCAGTAATGACAGCAACTTATCTTATCAACCGCACGCCATCAAGGATACTTGGAATGCAGACACCATGTGAGATGATATTTGGAAAGAATGAATTTGTTGTTCCACCAAAAGTGTTTGGTTGCACTTGTTTTGTTAGAGATCATAGACCTTCCGTTGGAAAACTTGATCCTCGGGCTGTCAAATGCATCTTTATAGGCTATCCATCTGGCCAGAAGGGGTATAAGTGTTGGAGTCCATCAGAACGACGAACCTTTGTTAGTATGGATGTTACTTTTAGAGAATCTGTCCCATTCTACGGTGAGAAGACAGATTTAAGTTCTTTATTCGTTGATCTTGATAATTCAACTAGTGGTCATGATGGTCAACAGATGGAAGGTGAAATATTGGGTCCAAAGGGAGATGAACAATCAAAGAAGGAAAAGTTTGTGGTTGGTTCAATTCCATGTCCTATGGGTGGTCCTGTTGCACAAGAGCAAGAATGGAGGAAGCCACATGAAGAGGAAAATCTTCAAGTATACACAAGGAGAACAAGGTGTCCAGTAATCCAACAAGTTGAAGAGGATAATCAGGTAGAGAAAGATGTAAATCATGAGCAAGGGTCTTTGGAGTCAGGGGGAGAAGAAGAGGAAGTTAGAGAAGAATCTGACTTACCAATTGCTGTCAGAAAGAGTGTGAGAAGCAATGCAGGTAAACCTCCACTAAGGTATGGTTTTGAAGATCAAGATGAGGGTGATGAAGAAAATAATATATCCAACTTTGTTTCCTATGACTCCTTGTCATCCACATATAAAGCCTTTGTAGCATCACTAGATTCAATGGAAATCCCAAAGGATTGGAGAGAAGCAAAGCAAGATCCAAGGTGGCATCAAGCTATGTTAGATGAACTAGAGGCTCTTGAAAAGAACAAAACATGGGATCTTGTACCATTTCCTGAAGGAAAGAAAGTTGTCAACTGTAAGTGGGTTTATACAGTAAAGCAAAATCCTAATGGAAAGGTGGAAAGATACAAAGCAAGGCTGGTGGCTAAGGGATATAGTCAAACATATGGAATTGATTATGATGAAACTTTTGCACCAGTAGCAAAGATGAGCACGGTAAGAACTCTCATATCTTGTGCAGCTAATTTTGATTGGCCATTGCATCAGCTAGATGTCAAGAATGCATTTTTACATGGAGATCTTCAAGAAGAGGTGTATATGGATATCCCACCGGGATTTGCTACTTCACAAACTGAAGGAAAGGTGCTGAGATTGAAGAAATCTTTGTATGGTCTTAAACAATCACCAAGAGCATGA
More
|
|||||||
| Protein seq | MYAMNVPKFLWSEAVMTATYLINRTPSRILGMQTPCEMIFGKNEFVVPPKVFGCTCFVRDHRPSVGKLDPRAVKCIFIGYPSGQKGYKCWSPSERRTFVSMDVTFRESVPFYGEKTDLSSLFVDLDNSTSGHDGQQMEGEILGPKGDEQSKKEKFVVGSIPCPMGGPVAQEQEWRKPHEEENLQVYTRRTRCPVIQQVEEDNQVEKDVNHEQGSLESGGEEEEVREESDLPIAVRKSVRSNAGKPPLRYGFEDQDEGDEENNISNFVSYDSLSSTYKAFVASLDSMEIPKDWREAKQDPRWHQAMLDELEALEKNKTWDLVPFPEGKKVVNCKWVYTVKQNPNGKVERYKARLVAKGYSQTYGIDYDETFAPVAKMSTVRTLISCAANFDWPLHQLDVKNAFLHGDLQEEVYMDIPPGFATSQTEGKVLRLKKSLYGLKQSPRA
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.146962 | 0.173391 | 0.137460 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0380700 | SBH | 0.000000 | 0.0 | 0.286608 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g06230 | RBH | 0.475954 | 0.347069 | 0.178892 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0380700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0387200 | SBH | 0 | 0 | 0.0067225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0397300 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
