Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g30720 | OGI:05048000 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:17788198-17791262 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCAGGGAGATTGGACTTTAATGATGTGCATTCCGATGCAGAATCGGTTACTGCAGGTATTCCGAATCGACGAGATCAATACACCACGCCTCAAAAGTCCTCAAGCACTCCATTCTGTGTAAGTATTATTGCACACCCATTTTTTCAAGTTAGTTTAAGCATTCATGATATGCTGCTCTTTCATCATTGTTAATGTGCACTGTGTAGGGTTCGTATTTTATTCCAGACTGTGATGATTCTATGGTGCCAAACATCGGTATGACTTTTAATGGTTTAGAATCAGCCAAGGAGTTTTATGAAAGCTATGCGCTTAGAGTTGGCTTCTCAGTTCGCATTGGACAACACAAGAAAGTTGATGGAGTGGTTCTGTACAAACTGTTCCTTTGTGCGAACGAAGGATTCTGGGAGGACAAAGGTGAGAGAGGACTAGAATCTGGTAGTGAGAAAAGGAGTTATGAGAAAAGAATCACTAGGTGTGGTTGTGAGGCGAAGCTGGTTATTAAACTAGTCGATGGCGATAAGTATGTTATCACGGGATTTGAGCAAGGTCATACACATGCATTCGTTTCTCCTGACAAGAGGCATCTCATACGTTCCAACAGAAAGCTTACCTTGAGTGGTAGAAACACATTGCTCACGTGCCATAAAGCTAGCATCGGTACATCACAAGCATACCGATACCTTCGTGTTGGTGTAGGAGGGTTTGAGAATGTTGGATTTACAAAAAGGGACTTGCAGAACTACCATAGTGCTCTAAGAGTTTTGATAAAGTCCTCAGATGCTCTAATGTTTGTTGATCAGTTGAGTAGGAAGAGTCTTGCAAACCCAGGTTTTTATTTTGACTATGTTGTGGATGACAAGGGGAGGTTAATTCATGTATTTTGGGCAGATGCTATTTGCAGGAAAAATTATGCTCACTTTGGAGATCTCGTCTCTTTCGACTCTACATACAGCACCAATGAGTATGGCATGGTTTTTACCCCTTTCACAGGAGTGAACCACCACAAGAGCAGTGTACTTTTTGGTGCTACAATGTTATCTGACGAGACAATGGAGTCCTATATGTGGTTGTTCCACACTTTTTTGAAAGCAATGGGAGGTGTTGCACCTAAGCTAATTATCACTGATGAAGCTGCAAGCATGAAAGCTGCAATAAGAGAAGTTCTGACCACTACTATTCATAGACTATGCATGTGGCACATTTTGATGAAGGTTTGTGAGAAGGTTGGACCAATTCTGAAAGAGGATGAAAAATTCAAAGCCCGACTAAGCTCTTGTGTGTGGTCTTCTGAAACACCACTCGAATTCGAGGATGAATGGAGTTGTATTATTTATGAATATGGGTTGGAAGACAACGAATGGTTCAGTACAAAGTTCGATCAACGGCGTTCATGGGTGCCAGCTTATTTTAGTGACATACCTTTGTTAGGATTGTTAAGGACCACCTCAAGGTCAGAGAGTGCCGATTCATTCTTTTCTCGTCTAATTGGGTGGAAGCTTGCTTTGGTGGAGTTTTGGCTCAGGCTTGATGCTGCACTAGAAGAACAAAGACATAAGGAACTAGAAGAAGATAACATTACGCTCCACACAATCCGCAATTTGAAGACAGAATGGGTGATAGAGAAGCATGCAAGTGAGTTCTTCACACTAGGGGTGGGCATATTTAGACCGAACCGAAGAACCGAACCGAAAAGACCGAGACCGAGACCGAAAAGACCGAGACCGAGAAATTCGGTTATCTATTCGGTCCCAGCCCTCAAAAGACCGAATTTATTTCGGTTATTGGGTTCGGTTAACCGAATTAACCGAAATGACCGAAATTTTGGCCCAATAGACCTAGGAAGCCCAATAAGCCCACTAAAACAAACCCTAGAAGTGATACTAACCCTACTACCAGTGCAGCCTCCTCCTCCAGCCCCACCACGCCGCCGCCTCCTCCTCCAGCCCCCACCGCACCGCCGCCTCCTCCAGCCTCCACCGCGCCGCCGCCGCCGGCTCTGCCCTCCACCGCGCTGCCGCCGCCTCCGCCCTCCCCTGCGCCGCGGCCCGCCTCCGCCCTCCACCGTGCGACCGCCGCCGCCGTCCTCCACCGCGCCGCGGCCGCCGCCCTCCACCGCGCGTTCCAAATTTTTTCGTTCCAAACTCTCCTCAAAAATTTCGGTCAGACCGAGACCGAAAAAACCGAGACCGAATTTGCCGGTCCTGAGTTTTTTTGGATGAAATTCGGTCCTGAGTTTGCGAAGACCGAACTGACCGAAAAACCGAAGACCGGGACCGAATTTTTCGGTCTGACCAAACGCCCACCCCTACTTCACACATGAGGTATTTAGCATAATTTAGAAAGAGGTGCTAGCTGCCAGGGACCGTTGCCTTATTGACAATGTGCAACAAGATGGCGAGGTCAAAATCATCGATATCATTGAAGAATCCAGGAAGCCAAGAGTTGTGCGTTATGATAGACAGACAATGGTTGCAACGTGCACATTTATGCTGTTTGAAACTCATGGTATACCATGTCGTCATCTAATTCCAGTCCTAAGAAGTGCCCAGCTAAGTGAACTGCCGAGATACTATTTATTGGAAAGGTTTAGGAAGGACTGCAAGAAGACACATGTGTTCGATGCAGATGGTATCTTGTTGGAAGAAAACACAAGCAACAGTAATGATCCTGTGATGCAAAAAATGCTTTCAGAAGCATGCAACCAAATGGAGAAGCTCATCCTACAAGCTAAGCAATCAGCAGCAGCTATGCAACTTTTGAGGGATGAACTAGTTGTGCTTGGTGATAAATTAAATGAGATGGTTCCTGAAAAAGAGCTTAGCCAAATTGAGGAATTTGAATCATATCTTGGATGTAGCATTCCAAGTCAAATTGAAATCCACCCGCCAAATGACACTCGTTCCAGGGGTCGGATAAAGAGAATTAAAGGGCACAATGACAAGGAGAAAAAGCAAAACAAGAAGAGAAAGAAAAAAGAGAGAGTACCACGAAGGTGCAAGAAGTGCAAACAAGTCATGCTGCACGATTCGCACAACTGTCCTAACAAAGAACCACAACAGTGA
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| CDS seq | ATGGCAGGGAGATTGGACTTTAATGATGTGCATTCCGATGCAGAATCGGTTACTGCAGACTGTGATGATTCTATGGTGCCAAACATCGGTATGACTTTTAATGGTTTAGAATCAGCCAAGGAGTTTTATGAAAGCTATGCGCTTAGAGTTGGCTTCTCAGTTCGCATTGGACAACACAAGAAAGTTGATGGAGTGGTTCTGTACAAACTGTTCCTTTGTGCGAACGAAGGATTCTGGGAGGACAAAGGTGAGAGAGGACTAGAATCTGGTAGTGAGAAAAGGAGTTATGAGAAAAGAATCACTAGGTGTGGTTGTGAGGCGAAGCTGGTTATTAAACTAGTCGATGGCGATAAGTATGTTATCACGGGATTTGAGCAAGGTCATACACATGCATTCGTTTCTCCTGACAAGAGGCATCTCATACGTTCCAACAGAAAGCTTACCTTGAGTGGTAGAAACACATTGCTCACGTGCCATAAAGCTAGCATCGGTACATCACAAGCATACCGATACCTTCGTGTTGGTGTAGGAGGGTTTGAGAATGTTGGATTTACAAAAAGGGACTTGCAGAACTACCATAGTGCTCTAAGAGTTTTGATAAAGTCCTCAGATGCTCTAATGTTTGTTGATCAGTTGAGTAGGAAGAGTCTTGCAAACCCAGGTTTTTATTTTGACTATGTTGTGGATGACAAGGGGAGGTTAATTCATGTATTTTGGGCAGATGCTATTTGCAGGAAAAATTATGCTCACTTTGGAGATCTCGTCTCTTTCGACTCTACATACAGCACCAATGAGTATGGCATGGTTTTTACCCCTTTCACAGGAGTGAACCACCACAAGAGCAGTGTACTTTTTGGTGCTACAATGTTATCTGACGAGACAATGGAGTCCTATATGTGGTTGTTCCACACTTTTTTGAAAGCAATGGGAGGTGTTGCACCTAAGCTAATTATCACTGATGAAGCTGCAAGCATGAAAGCTGCAATAAGAGAAGTTCTGACCACTACTATTCATAGACTATGCATGTGGCACATTTTGATGAAGGTTTGTGAGAAGGTTGGACCAATTCTGAAAGAGGATGAAAAATTCAAAGCCCGACTAAGCTCTTGTGTGTGGTCTTCTGAAACACCACTCGAATTCGAGGATGAATGGAGTTGTATTATTTATGAATATGGGTTGGAAGACAACGAATGGTTCAGTACAAAGTTCGATCAACGGCGTTCATGGGTGCCAGCTTATTTTAGTGACATACCTTTGTTAGGATTGTTAAGGACCACCTCAAGGTCAGAGAGTGCCGATTCATTCTTTTCTCGTCTAATTGGGTGGAAGCTTGCTTTGGTGGAGTTTTGGCTCAGGCTTGATGCTGCACTAGAAGAACAAAGACATAAGGAACTAGAAGAAGATAACATTACGCTCCACACAATCCGCAATTTGAAGACAGAATGGGTGATAGAGAAGCATGCAATCCTAAGAAGTGCCCAGCTAAGTGAACTGCCGAGATACTATTTATTGGAAAGGTTTAGGAAGGACTGCAAGAAGACACATGTGTTCGATGCAGATGGTATCTTGTTGGAAGAAAACACAAGCAACAGTAATGATCCTGTGATGCAAAAAATGCTTTCAGAAGCATGCAACCAAATGGAGAAGCTCATCCTACAAGCTAAGCAATCAGCAGCAGCTATGCAACTTTTGAGGGATGAACTAGTTGTGCTTGGTGATAAATTAAATGAGATGGTTCCTGAAAAAGAGCTTAGCCAAATTGAGGAATTTGAATCATATCTTGGATGTAGCATTCCAAGTCAAATTGAAATCCACCCGCCAAATGACACTCGTTCCAGGGGTCGGATAAAGAGAATTAAAGGGCACAATGACAAGGAGAAAAAGCAAAACAAGAAGAGAAAGAAAAAAGAGAGAGTACCACGAAGGTGCAAGAAGTGCAAACAAGTCATGCTGCACGATTCGCACAACTGTCCTAACAAAGAACCACAACAGTGA
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| Protein seq | MAGRLDFNDVHSDAESVTADCDDSMVPNIGMTFNGLESAKEFYESYALRVGFSVRIGQHKKVDGVVLYKLFLCANEGFWEDKGERGLESGSEKRSYEKRITRCGCEAKLVIKLVDGDKYVITGFEQGHTHAFVSPDKRHLIRSNRKLTLSGRNTLLTCHKASIGTSQAYRYLRVGVGGFENVGFTKRDLQNYHSALRVLIKSSDALMFVDQLSRKSLANPGFYFDYVVDDKGRLIHVFWADAICRKNYAHFGDLVSFDSTYSTNEYGMVFTPFTGVNHHKSSVLFGATMLSDETMESYMWLFHTFLKAMGGVAPKLIITDEAASMKAAIREVLTTTIHRLCMWHILMKVCEKVGPILKEDEKFKARLSSCVWSSETPLEFEDEWSCIIYEYGLEDNEWFSTKFDQRRSWVPAYFSDIPLLGLLRTTSRSESADSFFSRLIGWKLALVEFWLRLDAALEEQRHKELEEDNITLHTIRNLKTEWVIEKHAILRSAQLSELPRYYLLERFRKDCKKTHVFDADGILLEENTSNSNDPVMQKMLSEACNQMEKLILQAKQSAAAMQLLRDELVVLGDKLNEMVPEKELSQIEEFESYLGCSIPSQIEIHPPNDTRSRGRIKRIKGHNDKEKKQNKKRKKKERVPRRCKKCKQVMLHDSHNCPNKEPQQ |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g30720 | LOC_Os05g30720.1 | Chr05 | 17788198 | 17791262 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCAGGGAGATTGGACTTTAATGATGTGCATTCCGATGCAGAATCGGTTACTGCAGACTGTGATGATTCTATGGTGCCAAACATCGGTATGACTTTTAATGGTTTAGAATCAGCCAAGGAGTTTTATGAAAGCTATGCGCTTAGAGTTGGCTTCTCAGTTCGCATTGGACAACACAAGAAAGTTGATGGAGTGGTTCTGTACAAACTGTTCCTTTGTGCGAACGAAGGATTCTGGGAGGACAAAGGTGAGAGAGGACTAGAATCTGGTAGTGAGAAAAGGAGTTATGAGAAAAGAATCACTAGGTGTGGTTGTGAGGCGAAGCTGGTTATTAAACTAGTCGATGGCGATAAGTATGTTATCACGGGATTTGAGCAAGGTCATACACATGCATTCGTTTCTCCTGACAAGAGGCATCTCATACGTTCCAACAGAAAGCTTACCTTGAGTGGTAGAAACACATTGCTCACGTGCCATAAAGCTAGCATCGGTACATCACAAGCATACCGATACCTTCGTGTTGGTGTAGGAGGGTTTGAGAATGTTGGATTTACAAAAAGGGACTTGCAGAACTACCATAGTGCTCTAAGAGTTTTGATAAAGTCCTCAGATGCTCTAATGTTTGTTGATCAGTTGAGTAGGAAGAGTCTTGCAAACCCAGGTTTTTATTTTGACTATGTTGTGGATGACAAGGGGAGGTTAATTCATGTATTTTGGGCAGATGCTATTTGCAGGAAAAATTATGCTCACTTTGGAGATCTCGTCTCTTTCGACTCTACATACAGCACCAATGAGTATGGCATGGTTTTTACCCCTTTCACAGGAGTGAACCACCACAAGAGCAGTGTACTTTTTGGTGCTACAATGTTATCTGACGAGACAATGGAGTCCTATATGTGGTTGTTCCACACTTTTTTGAAAGCAATGGGAGGTGTTGCACCTAAGCTAATTATCACTGATGAAGCTGCAAGCATGAAAGCTGCAATAAGAGAAGTTCTGACCACTACTATTCATAGACTATGCATGTGGCACATTTTGATGAAGGTTTGTGAGAAGGTTGGACCAATTCTGAAAGAGGATGAAAAATTCAAAGCCCGACTAAGCTCTTGTGTGTGGTCTTCTGAAACACCACTCGAATTCGAGGATGAATGGAGTTGTATTATTTATGAATATGGGTTGGAAGACAACGAATGGTTCAGTACAAAGTTCGATCAACGGCGTTCATGGGTGCCAGCTTATTTTAGTGACATACCTTTGTTAGGATTGTTAAGGACCACCTCAAGGTCAGAGAGTGCCGATTCATTCTTTTCTCGTCTAATTGGGTGGAAGCTTGCTTTGGTGGAGTTTTGGCTCAGGCTTGATGCTGCACTAGAAGAACAAAGACATAAGGAACTAGAAGAAGATAACATTACGCTCCACACAATCCGCAATTTGAAGACAGAATGGGTGATAGAGAAGCATGCAATCCTAAGAAGTGCCCAGCTAAGTGAACTGCCGAGATACTATTTATTGGAAAGGTTTAGGAAGGACTGCAAGAAGACACATGTGTTCGATGCAGATGGTATCTTGTTGGAAGAAAACACAAGCAACAGTAATGATCCTGTGATGCAAAAAATGCTTTCAGAAGCATGCAACCAAATGGAGAAGCTCATCCTACAAGCTAAGCAATCAGCAGCAGCTATGCAACTTTTGAGGGATGAACTAGTTGTGCTTGGTGATAAATTAAATGAGATGGTTCCTGAAAAAGAGCTTAGCCAAATTGAGGAATTTGAATCATATCTTGGATGTAGCATTCCAAGTCAAATTGAAATCCACCCGCCAAATGACACTCGTTCCAGGGGTCGGATAAAGAGAATTAAAGGGCACAATGACAAGGAGAAAAAGCAAAACAAGAAGAGAAAGAAAAAAGAGAGAGTACCACGAAGGTGCAAGAAGTGCAAACAAGTCATGCTGCACGATTCGCACAACTGTCCTAACAAAGAACCACAACAGTGA
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| Protein seq | MAGRLDFNDVHSDAESVTADCDDSMVPNIGMTFNGLESAKEFYESYALRVGFSVRIGQHKKVDGVVLYKLFLCANEGFWEDKGERGLESGSEKRSYEKRITRCGCEAKLVIKLVDGDKYVITGFEQGHTHAFVSPDKRHLIRSNRKLTLSGRNTLLTCHKASIGTSQAYRYLRVGVGGFENVGFTKRDLQNYHSALRVLIKSSDALMFVDQLSRKSLANPGFYFDYVVDDKGRLIHVFWADAICRKNYAHFGDLVSFDSTYSTNEYGMVFTPFTGVNHHKSSVLFGATMLSDETMESYMWLFHTFLKAMGGVAPKLIITDEAASMKAAIREVLTTTIHRLCMWHILMKVCEKVGPILKEDEKFKARLSSCVWSSETPLEFEDEWSCIIYEYGLEDNEWFSTKFDQRRSWVPAYFSDIPLLGLLRTTSRSESADSFFSRLIGWKLALVEFWLRLDAALEEQRHKELEEDNITLHTIRNLKTEWVIEKHAILRSAQLSELPRYYLLERFRKDCKKTHVFDADGILLEENTSNSNDPVMQKMLSEACNQMEKLILQAKQSAAAMQLLRDELVVLGDKLNEMVPEKELSQIEEFESYLGCSIPSQIEIHPPNDTRSRGRIKRIKGHNDKEKKQNKKRKKKERVPRRCKKCKQVMLHDSHNCPNKEPQQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.811916 | 0.336365 | 0.577372 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0370100 | RBH | 0.800715 | 0.468813 | 1.020241 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g38440 | RBH | 0.270557 | 0.519579 | 0.499916 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0370100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020690 | SBH | 0.202172 | 2.573919 | 1.377812 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020640 | SBH | 0.045811 | 0.000000 | 0.636603 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0020520 | SBH | 0.0 | 1.010219 | 0.827467 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020520 | SBH | 0.043517 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0266400 | SBH | 0.003383 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0281800 | SBH | 0 | 0 | 0.005887 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020480 | SBH | 0.000000 | 0.099828 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020030 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020480 | SBH | 0.138442 | 0.000000 | 0.000000 |
