Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g30710 | OGI:05047980 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:17783509-17785974 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAATGCAGATATTGCTGGTAAGTAATTACCTCATGAGGAAATATTAACCTAGGGTACAGAGACGTAGATGCTTTTCTACACCATCCTTGCCAAGTTCTGTAAAATGTAGAGTCGAACAAGACAAGAAAAATCACCAATAGTCTGCGCATGAACATTTTCCATCCTTGAAGTGATGAAATCGGTTGGTGTCTCTAACATATATCTCCCTCCTCTCGAAAGATGATATGAACTTCATTGCTTCATGGCAGTCACCACAAATCCGAAGATTCTTTATCACCTGAAGGGGTGTTCCATGACTTGTGCTTATAAGGCCCAATGCTACAGCCAACTTCTCACTGTGCACAGAAAGGATATCATCCTTTTCTTGCTCTTCCACATCATGTAGGACATAATCTGTACTTGGTGCAAAGCCTAGCCTCCTCATCTCCATAGTAAGGTGTTTTAGCTTCTCAGTTATTGCAGCCATCATGGGGTGTGAACTATCACCAGCCAACAACATGTGTACCTTGTTCTTGATCTCTATCCAACTACAGCCTTTTTCTTTCTTCAACCCTACAGTCTTCATCATATCCCTCAGCCTATTGACCCCATCCCACATTTTCTTGGATGCATAAATGTTGGAAAGCAGGACATAATTACCAGCATTTTCTGGCTCTAGTTGAAATAGATTTTCTGCTGCAACCTCAGCAAGGACCACATTTCCATGAACCCTGCAAGAGCCCAGCAATGACCCCCAAATACAACCGTCTGGCTCAAACGGCATCTGATTTATGATATCATACGCATCATCAAGCTTACCAGCCCGACCAAGCAGAGTAACCATACATGCGTAATGCTCCATCCTCGGAGAAATTCCATGCTTGTGCTGCATTTCATTAAAGTAACTACGCCCCTCCTCTGTCCAGCCAGCTTGGCTGCAGGCACCAAGGACACAAGTGAAGGTGACTAGGTCAGGCTTCTCTTTGGAACTTTGCATGGATCGGAACAACCGCACAGCATTCTCAGCCTCTCCATGCATAGCATAGCCACCAATCATTGCATTCCATGAAACCACATTCCTATATGGCATTGCTTCAAAGATCATCCTTGCATCCCTGACCCTGCCACACTTGGCGTACATGTCCACCAAAGCACTCCCCACATAAATGTCATGATGAAAGCCCTTCCTAAGAGAAAAACAGTGTGCAGAACGACCATGCATCAGAGCTGCAATATTTGCAAAAGCTGGCAGCACGCACGGTATTGTAACTGAATTTGGCTCGATTCCTTCTGACTGCATCTCCCTGAAAAGATCAACGGCTTCCAGATCCCTTCCATTCTGCACACAACAAGCTACAATCGAGGTCCAGGAAACAACATTCAACTCAATCCCTCTGCCGACAAACTCCCTGAACAACCTTAAAGCCTCAGAGACTTGAGCATTCCGTGACAGCCCAGCGACGAGGGCATTGCAAGAGGCAACATCCATATGGCTTGACTCATCAAACACCCGGACTATCTCATCAGCTCGTCCGCACTTGCCATACATGTCGATGAGCGCAGTGGCCACACAAGCATCCAACCTGCACCCGGCCTTCACCACATACCCATGGAGCTGCTCACCGACAGCGACATCTCCAACATCCCCAACCGCAGATAGCGCACACGAGACTCCGGTCGCGTCAGGCAAGAACCCTTCCCCGTGCATCCTCACAAGCGCCAGGACCGCGTCCCGTGCGCGCCCGCTCCGGTTCAGCCCGGAGACAAGCCCGTTCCAGGTGATCACATTCGGCTCGACGCCATCGCTCCGCATCCGCTCGAGGAGCCCCCACGCTCCCTCGGCGTCCCCGTGAGAGGCGTGAGCGGCAATGAGCGCGCTCCAGCCCACGACGGTCCTGTGCGGCATTCCGTCGAGCACGCTGCGGGCGTCGGCCGTGGCGCCGAAGCGGAGGTAGGCGTGGAGGAGCGAGGACGCGACGAAGGCGTCCCGCGAGACGCCCGCGACGGCGGCGGCCGCGTGCAGGGCGCGGGCGAGGCGCAGCGCCGAGCATGACTTGAGCGCGGAGGGGAGGAGGCGCGGGTCCGGCGGGAAGGAGACGTGGCGTAGGAAGTTGAGGACGGAGCTGGTGGTGGAGCGGGTGGACATCGGCTCGGCGGCGCCGGGCCGTCTCGCATCTCCCCCGCTCGATCTTCTGCGACGATCCAACCGCTTGTGGTGGTGAGCTCGAGAAGCCACGGAACGAGAGGAGAATGGCGCCGGCTCGATCGGGAGAGGACGGCTGCGCCACCGAGCCGGAGAGCAGCAGCGGGGGATGCCGTGGAGCAGCAGCGAGATGAGAGGCGGGTGGCGGCGGATGAGATGAGCGGTGGAGGCGTCAGGCGGCGGAGGATTCGCCGGAGCAGGCGGCGGAGGTATGGATGGATGGGTGGGAAGACCGACGAGAGCGAAAATCAAATGGATTTGGGATTGACCTGCAGTTTCAAACA
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| CDS seq | ATGTCCACCCGCTCCACCACCAGCTCCGTCCTCAACTTCCTACGCCACGTCTCCTTCCCGCCGGACCCGCGCCTCCTCCCCTCCGCGCTCAAGTCATGCTCGGCGCTGCGCCTCGCCCGCGCCCTGCACGCGGCCGCCGCCGTCGCGGGCGTCTCGCGGGACGCCTTCGTCGCGTCCTCGCTCCTCCACGCCTACCTCCGCTTCGGCGCCACGGCCGACGCCCGCAGCGTGCTCGACGGAATGCCGCACAGGACCGTCGTGGGCTGGAGCGCGCTCATTGCCGCTCACGCCTCTCACGGGGACGCCGAGGGAGCGTGGGGGCTCCTCGAGCGGATGCGGAGCGATGGCGTCGAGCCGAATGTGATCACCTGGAACGGGCTTGTCTCCGGGCTGAACCGGAGCGGGCGCGCACGGGACGCGGTCCTGGCGCTTGTGAGGATGCACGGGGAAGGGTTCTTGCCTGACGCGACCGGAGTCTCGTGTGCGCTATCTGCGGTTGGGGATGTTGGAGATGTCGCTGTCGGTGAGCAGCTCCATGGGTATGTGGTGAAGGCCGGGTGCAGGTTGGATGCTTGTGTGGCCACTGCGCTCATCGACATGTATGGCAAGTGCGGACGAGCTGATGAGATAGTCCGGGTGTTTGATGAGTCAAGCCATATGGATGTTGCCTCTTGCAATGCCCTCGTCGCTGGGCTGTCACGGAATGCTCAAGTCTCTGAGGCTTTAAGGTTGTTCAGGGAGTTTGTCGGCAGAGGGATTGAGTTGAATGTTGTTTCCTGGACCTCGATTGTAGCTTGTTGTGTGCAGAATGGAAGGGATCTGGAAGCCGTTGATCTTTTCAGGGAGATGCAGTCAGAAGGAATCGAGCCAAATTCAGTTACAATACCGTGCGTGCTGCCAGCTTTTGCAAATATTGCAGCTCTGATGCATGGTCGTTCTGCACACTGTTTTTCTCTTAGGAAGGGCTTTCATCATGACATTTATGTGGGGAGTGCTTTGGTGGACATGTACGCCAAGTGTGGCAGGGTCAGGGATGCAAGGATGATCTTTGAAGCAATGCCATATAGGAATGTGGTTTCATGGAATGCAATGATTGGTGGCTATGCTATGCATGGAGAGGCTGAGAATGCTGTGCGGTTGTTCCGATCCATGCAAAGTTCCAAAGAGAAGCCTGACCTAGTCACCTTCACTTGTGTCCTTGGTGCCTGCAGCCAAGCTGGCTGGACAGAGGAGGGGCGTAGTTACTTTAATGAAATGCAGCACAAGCATGGAATTTCTCCGAGGATGGAGCATTACGCATGTATGGTTACTCTGCTTGGTCGGGCTGGTAAGCTTGATGATGCGTATGATATCATAAATCAGATGCCGTTTGAGCCAGACGGTTGTATTTGGGGGTCATTGCTGGGCTCTTGCAGGGTTCATGGAAATGTGGTCCTTGCTGAGGTTGCAGCAGAAAATCTATTTCAACTAGAGCCAGAAAATGCTGGTAATTATGTCCTGCTTTCCAACATTTATGCATCCAAGAAAATGTGGGATGGGGTCAATAGGCTGAGGGATATGATGAAGACTGTAGGGTTGAAGAAAGAAAAAGGCTGTAGTTGGATAGAGATCAAGAACAAGGTACACATGTTGTTGGCTGGTGATAGTTCACACCCCATGATGGCTGCAATAACTGAGAAGCTAAAACACCTTACTATGGAGATGAGGAGGCTAGGCTTTGCACCAAGTACAGATTATGTCCTACATGATGTGGAAGAGCAAGAAAAGGATGATATCCTTTCTGTGCACAGTGAGAAGTTGGCTGTAGCATTGGGCCTTATAAGCACAAGTCATGGAACACCCCTTCAGGTGATAAAGAATCTTCGGATTTGTGGTGACTGCCATGAAGCAATGAAGTTCATATCATCTTTCGAGAGGAGGGAGATATATGTTAGAGACACCAACCGATTTCATCACTTCAAGGATGGAAAATGTTCATGCGCAGACTATTGGTGA
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| Protein seq | MSTRSTTSSVLNFLRHVSFPPDPRLLPSALKSCSALRLARALHAAAAVAGVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW |
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| Function | Pentatricopeptide repeat-containing protein At1g20230 [UniProtKB/Swiss-Prot:Q9LNU6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g30710 | LOC_Os05g30710.1 | Chr05 | 17783509 | 17785974 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCCACCCGCTCCACCACCAGCTCCGTCCTCAACTTCCTACGCCACGTCTCCTTCCCGCCGGACCCGCGCCTCCTCCCCTCCGCGCTCAAGTCATGCTCGGCGCTGCGCCTCGCCCGCGCCCTGCACGCGGCCGCCGCCGTCGCGGGCGTCTCGCGGGACGCCTTCGTCGCGTCCTCGCTCCTCCACGCCTACCTCCGCTTCGGCGCCACGGCCGACGCCCGCAGCGTGCTCGACGGAATGCCGCACAGGACCGTCGTGGGCTGGAGCGCGCTCATTGCCGCTCACGCCTCTCACGGGGACGCCGAGGGAGCGTGGGGGCTCCTCGAGCGGATGCGGAGCGATGGCGTCGAGCCGAATGTGATCACCTGGAACGGGCTTGTCTCCGGGCTGAACCGGAGCGGGCGCGCACGGGACGCGGTCCTGGCGCTTGTGAGGATGCACGGGGAAGGGTTCTTGCCTGACGCGACCGGAGTCTCGTGTGCGCTATCTGCGGTTGGGGATGTTGGAGATGTCGCTGTCGGTGAGCAGCTCCATGGGTATGTGGTGAAGGCCGGGTGCAGGTTGGATGCTTGTGTGGCCACTGCGCTCATCGACATGTATGGCAAGTGCGGACGAGCTGATGAGATAGTCCGGGTGTTTGATGAGTCAAGCCATATGGATGTTGCCTCTTGCAATGCCCTCGTCGCTGGGCTGTCACGGAATGCTCAAGTCTCTGAGGCTTTAAGGTTGTTCAGGGAGTTTGTCGGCAGAGGGATTGAGTTGAATGTTGTTTCCTGGACCTCGATTGTAGCTTGTTGTGTGCAGAATGGAAGGGATCTGGAAGCCGTTGATCTTTTCAGGGAGATGCAGTCAGAAGGAATCGAGCCAAATTCAGTTACAATACCGTGCGTGCTGCCAGCTTTTGCAAATATTGCAGCTCTGATGCATGGTCGTTCTGCACACTGTTTTTCTCTTAGGAAGGGCTTTCATCATGACATTTATGTGGGGAGTGCTTTGGTGGACATGTACGCCAAGTGTGGCAGGGTCAGGGATGCAAGGATGATCTTTGAAGCAATGCCATATAGGAATGTGGTTTCATGGAATGCAATGATTGGTGGCTATGCTATGCATGGAGAGGCTGAGAATGCTGTGCGGTTGTTCCGATCCATGCAAAGTTCCAAAGAGAAGCCTGACCTAGTCACCTTCACTTGTGTCCTTGGTGCCTGCAGCCAAGCTGGCTGGACAGAGGAGGGGCGTAGTTACTTTAATGAAATGCAGCACAAGCATGGAATTTCTCCGAGGATGGAGCATTACGCATGTATGGTTACTCTGCTTGGTCGGGCTGGTAAGCTTGATGATGCGTATGATATCATAAATCAGATGCCGTTTGAGCCAGACGGTTGTATTTGGGGGTCATTGCTGGGCTCTTGCAGGGTTCATGGAAATGTGGTCCTTGCTGAGGTTGCAGCAGAAAATCTATTTCAACTAGAGCCAGAAAATGCTGGTAATTATGTCCTGCTTTCCAACATTTATGCATCCAAGAAAATGTGGGATGGGGTCAATAGGCTGAGGGATATGATGAAGACTGTAGGGTTGAAGAAAGAAAAAGGCTGTAGTTGGATAGAGATCAAGAACAAGGTACACATGTTGTTGGCTGGTGATAGTTCACACCCCATGATGGCTGCAATAACTGAGAAGCTAAAACACCTTACTATGGAGATGAGGAGGCTAGGCTTTGCACCAAGTACAGATTATGTCCTACATGATGTGGAAGAGCAAGAAAAGGATGATATCCTTTCTGTGCACAGTGAGAAGTTGGCTGTAGCATTGGGCCTTATAAGCACAAGTCATGGAACACCCCTTCAGGTGATAAAGAATCTTCGGATTTGTGGTGACTGCCATGAAGCAATGAAGTTCATATCATCTTTCGAGAGGAGGGAGATATATGTTAGAGACACCAACCGATTTCATCACTTCAAGGATGGAAAATGTTCATGCGCAGACTATTGGTGA
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| Protein seq | MSTRSTTSSVLNFLRHVSFPPDPRLLPSALKSCSALRLARALHAAAAVAGVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLLERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLGSCRVHGNVVLAEVAAENLFQLEPENAGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKKEKGCSWIEIKNKVHMLLAGDSSHPMMAAITEKLKHLTMEMRRLGFAPSTDYVLHDVEEQEKDDILSVHSEKLAVALGLISTSHGTPLQVIKNLRICGDCHEAMKFISSFERREIYVRDTNRFHHFKDGKCSCADYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.734029 | 0.682655 | 0.031145 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0370000 | RBH | 1.086905 | 1.020353 | 0.121629 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g30690 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0370000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0014530 | RBH | 0.121468 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0014540 | RBH | 0.000000 | 0.000000 | 0.580003 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0014380 | RBH | 0.0 | 2.850972 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0014400 | RBH | 0.084781 | 0.056573 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0014550 | RBH | 0.0 | 0.0 | 0.722992 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0271800 | RBH | 0.405752 | 1.2632685 | 0.164257 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0014120 | RBH | 0.148505 | 0.128216 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0282500 | RBH | 0.5173615 | 1.618034 | 2.907756 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0014290 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0014320 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0014340 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0014410 | RBH | 0.000000 | 0.380395 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0014430 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G014090 | SBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0014360 | RBH | 0.0 | 0.000000 | 0.501865 |
