Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g28140 | OGI:05043550 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:16461398-16462066 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATGCCGATGGCGTCACTTCTTCTTCTTGCACAGGCGCTCGTGCAGCACAATCCTCGTCGATCTTCTCCCGGACGGCGCCCGGCATCGGCACTCTCTCCGTCCACAATCCACGGCCCTGGTACGCCTGCCGGCACAGTGTGTGGGCAACCGAGTTTCCCTCTCGATATATGTGCCGCACCTCGAACTCGGTGAAGCGGCGGAGCAGGGACAGTATCTCCTCGTGCATGGCCGCCGGGATCCTCGTCTGCGTCTCCTCGCCGCGCAGCAGCTGGACCAGCACCAGGTCGTCGCCCTCGACCACGATCCGCTCCACGAAGCACGCCAACGCAAGCTTCAGTCCCTTGATCAGCGCGCGGGCCTCCACCACCCCGACGGTCCAGTGCTCCGTAGTCTCGGCGAAGGCCAGCACGACGCCGCCGTCGCAGCCGCGGATGACGCCACCGATGCTCGCTCGCCGGGAGCCATCGTTAAACACACTGCCGTCGAAGTTGAGTTTGCACCACCCCACCGGCGGCGGCGCCCACCTGATGCGCAGCCGGGTCGGATGGAACGGCGGCGAGGACGGGGACAGCGCCGTGGAGCAGCGGGGAGCAGCCGGCGGCGGCGGGAGAAAGAACGGAGGCGACGGGAGCAGGAGGGATGGAGGCGTGCAGTGGAGGAAAGCCAT
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| CDS seq | ATGGCTTTCCTCCACTGCACGCCTCCATCCCTCCTGCTCCCGTCGCCTCCGTTCTTTCTCCCGCCGCCGCCGGCTGCTCCCCGCTGCTCCACGGCGCTGTCCCCGTCCTCGCCGCCGTTCCATCCGACCCGGCTGCGCATCAGGTGGGCGCCGCCGCCGGTGGGGTGGTGCAAACTCAACTTCGACGGCAGTGTGTTTAACGATGGCTCCCGGCGAGCGAGCATCGGTGGCGTCATCCGCGGCTGCGACGGCGGCGTCGTGCTGGCCTTCGCCGAGACTACGGAGCACTGGACCGTCGGGGTGGTGGAGGCCCGCGCGCTGATCAAGGGACTGAAGCTTGCGTTGGCGTGCTTCGTGGAGCGGATCGTGGTCGAGGGCGACGACCTGGTGCTGGTCCAGCTGCTGCGCGGCGAGGAGACGCAGACGAGGATCCCGGCGGCCATGCACGAGGAGATACTGTCCCTGCTCCGCCGCTTCACCGAGTTCGAGGTGCGGCACATATATCGAGAGGGAAACTCGGTTGCCCACACACTGTGCCGGCAGGCGTACCAGGGCCGTGGATTGTGGACGGAGAGAGTGCCGATGCCGGGCGCCGTCCGGGAGAAGATCGACGAGGATTGTGCTGCACGAGCGCCTGTGCAAGAAGAAGAAGTGACGCCATCGGCATGA
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| Protein seq | MAFLHCTPPSLLLPSPPFFLPPPPAAPRCSTALSPSSPPFHPTRLRIRWAPPPVGWCKLNFDGSVFNDGSRRASIGGVIRGCDGGVVLAFAETTEHWTVGVVEARALIKGLKLALACFVERIVVEGDDLVLVQLLRGEETQTRIPAAMHEEILSLLRRFTEFEVRHIYREGNSVAHTLCRQAYQGRGLWTERVPMPGAVREKIDEDCAARAPVQEEEVTPSA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g28140 | LOC_Os05g28140.1 | Chr05 | 16461398 | 16462066 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTTTCCTCCACTGCACGCCTCCATCCCTCCTGCTCCCGTCGCCTCCGTTCTTTCTCCCGCCGCCGCCGGCTGCTCCCCGCTGCTCCACGGCGCTGTCCCCGTCCTCGCCGCCGTTCCATCCGACCCGGCTGCGCATCAGGTGGGCGCCGCCGCCGGTGGGGTGGTGCAAACTCAACTTCGACGGCAGTGTGTTTAACGATGGCTCCCGGCGAGCGAGCATCGGTGGCGTCATCCGCGGCTGCGACGGCGGCGTCGTGCTGGCCTTCGCCGAGACTACGGAGCACTGGACCGTCGGGGTGGTGGAGGCCCGCGCGCTGATCAAGGGACTGAAGCTTGCGTTGGCGTGCTTCGTGGAGCGGATCGTGGTCGAGGGCGACGACCTGGTGCTGGTCCAGCTGCTGCGCGGCGAGGAGACGCAGACGAGGATCCCGGCGGCCATGCACGAGGAGATACTGTCCCTGCTCCGCCGCTTCACCGAGTTCGAGGTGCGGCACATATATCGAGAGGGAAACTCGGTTGCCCACACACTGTGCCGGCAGGCGTACCAGGGCCGTGGATTGTGGACGGAGAGAGTGCCGATGCCGGGCGCCGTCCGGGAGAAGATCGACGAGGATTGTGCTGCACGAGCGCCTGTGCAAGAAGAAGAAGTGACGCCATCGGCATGA
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| Protein seq | MAFLHCTPPSLLLPSPPFFLPPPPAAPRCSTALSPSSPPFHPTRLRIRWAPPPVGWCKLNFDGSVFNDGSRRASIGGVIRGCDGGVVLAFAETTEHWTVGVVEARALIKGLKLALACFVERIVVEGDDLVLVQLLRGEETQTRIPAAMHEEILSLLRRFTEFEVRHIYREGNSVAHTLCRQAYQGRGLWTERVPMPGAVREKIDEDCAARAPVQEEEVTPSA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g27760 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0012880 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0013180 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0013020 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0013060 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0013150 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0247600 | SBH | 0.0029955 | 0.003529 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0012800 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0255200 | RBH | 0 | 0 | 0.0181115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0013030 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0012980 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0013040 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0013090 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0013110 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G012770 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0013020 | SBH | 0.072382 | 0.0 | 0.184416 |
