Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g27610 | OGI:05045480 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:16064943-16067322 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCGCCGCCGCCACGCCACGCCACGCCACGCCACCGCCGCCACGCCACGCCGCCGCCGCCACGGCCCCACAACGCCACGCCGCCGCCGCCGTCGCCACGCCGCCGCGCCAACCGCCGCCCCGATGCCGCCACACCGCCGTTAACGAACGAGAACGAGAACGATCGAACGAACGAGAGCGAGAACGAACACGTCAACGTACGTTGCCGCGACAACGTGAACGAGAACGAGAACGATCGAACGAACGAGAGCGAGAACGAGAACGATCGAACGAAGACAAGCGAGAACGAGGGAACGAACGTGAATGAGAACAAGCGAACGAACGTGAATGAGAATGAGCGAACGAACGTGAACGAGCTAGGGAACGTGAACGAGCGAACGAACGAGGACGAACGTTAACGTGAAATGCAATATATATATATATATATATACATGTATATATATATATACATGTATATATATATATATACATGTATATATATATATACATGTATATATATATATATATATATATATATATATATATATATATATATATATGTTACTTCGCATTTATCCTAATACATTTTTTTTATCTTGCAGAAAAGACGTGTTGTCGGAGTCGTCCGTCAAGCCTGAGTGGAAGAGCTAGCCTTAGAAGGAATTGGAGCAGGCAAGTGACGTAATAATATAAATGATTGTTATATTTGTAATGCAATTAATTAAGATTATTAGACCTGTAATTAGACTTATCATATAAGATTGTGTAGTGTTCTAATATTATTTGAGTTTTAATATAAGATTATTTTATTGCAAATTAGACTTAGTATGACATTATTGACTACGGAATTGGTGCGACTCCTAGGAATTGACTATTGTAGTCTTAATTAGACTTAGCATATACGCACGAAACACTTAGCATACATTACTATTTTAGTCTTAGCATGTAATATTATTTGAGTTTTAATATAATATTACTTTATTTGTAATTAGACTTGGTATGTAATTATTGACTACGGAATTGGTGCGACAAGTAGCAATTGACTATTGTAGTCTTAATTAGACTTAGCATATACGCACGAAACACTTAGCATATACATGACTATTTTAGTATTAGCATGTAATATTATTTGAGTTTTAATATAAGATTATTTTATTTGTAATTAGACTTAGTATATAATTATTTACTAGCTAGGGTTGTATAATATACGTCACCTAGACTTAGCTTATATCACGATTTGTAATTAGACTTAGCACGTAAGGTTGTGTAGGGTTCTAATGTACGACATTTACACTTAGCATACATGACTTAGATTGTTAAAACATAAATGTCTCGTGACTTAGCAGATGTTTCATGTATCAACAGATGGCTGACCCCGATGAGGAACAGATATTGTACGATACAATCGCGGAGGGAAGCAGCCAGTACTGGAATGAAGAAGAGGGGAACGAGGATCCAAACCAGTACTTGAACGAGGAAGGGAACGTGGAGAGGGATGCGGAGGGGAACCAGCAGGGGCACGTGGAAAGGGATGTGGAGGGGAACCAGGAGGAGGAGGCTAGTGGTAGTCAACCCTCCGTTGGACAGAAGAGGGCACGCGGGCAACGAGGTGCAGCGAAGAAGCTTGAGGGTCGGCACATCATAACGGAAGTGGAAGAAGATGGACGTCCTAGTGCCCCGGCCGAAGCCGCCAAGAACTATGTACGTCACAGCGGTTGGGTTGTGCGGGATAACGTGCCTGTCAGTACGGTGTACTGGCGAAGAACAAGGGCACGCGGAGATCATGAGAGCTTTGTCCCAGATTCGGAGAAAGAGATGCTGTGGACCACAATGCTCGAGACATTCACCCTTCCTGCGGGTACAGAGGACAAAGTGAAAAGGTGGACTCTGAAGAAAATGGCAGAACAGTTTCAGAGCTTCAAGGGAGATCTGTACCAGAAGTATATACTGAAGGGGCAGACACCGAACTTCGACACATTCCCAAAGCTAAGGGATCACTGGGACGAGTTCGTTGCATATAAGACAGGTGAACAAGGGCAGGCGATGATGGAAAGAAACAAAGAAAATGCCGCCAAGAAGAAGTACCATCACCACTTGGGGTCAGGAGGCTATAGCGTCGCGATGCCGAAGTGGGAGCAGATGGAGGCTAGCTTGATTGAGAGGGGTATCGAACCGGCAACAGCCAATTGGCCGGAACGATCGAAGTTCTGGTACTATGCTCACGGTGGAACGCTCAACCCAGCTGATGGCTCACTGGTCTTCGGCTATCAGATACAAGAGGCTGCGCGACGACTAACAGATGCAGTGGAAGCCTCCTCTCAGGGCACGTTCCGACCAGACAGAGATAGGGACGAGCTGACACTCGCCCTGCAGACTCCAGAGCATCCAGGACGAACTTGA
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| CDS seq | ATGGCTGACCCCGATGAGGAACAGATATTGTACGATACAATCGCGGAGGGAAGCAGCCAGTACTGGAATGAAGAAGAGGGGAACGAGGATCCAAACCAGTACTTGAACGAGGAAGGGAACGTGGAGAGGGATGCGGAGGGGAACCAGCAGGGGCACGTGGAAAGGGATGTGGAGGGGAACCAGGAGGAGGAGGCTAGTGGTAGTCAACCCTCCGTTGGACAGAAGAGGGCACGCGGGCAACGAGGTGCAGCGAAGAAGCTTGAGGGTCGGCACATCATAACGGAAGTGGAAGAAGATGGACGTCCTAGTGCCCCGGCCGAAGCCGCCAAGAACTATGTACGTCACAGCGGTTGGGTTGTGCGGGATAACGTGCCTGTCAGTACGGTGTACTGGCGAAGAACAAGGGCACGCGGAGATCATGAGAGCTTTGTCCCAGATTCGGAGAAAGAGATGCTGTGGACCACAATGCTCGAGACATTCACCCTTCCTGCGGGTACAGAGGACAAAGTGAAAAGGTGGACTCTGAAGAAAATGGCAGAACAGTTTCAGAGCTTCAAGGGAGATCTGTACCAGAAGTATATACTGAAGGGGCAGACACCGAACTTCGACACATTCCCAAAGCTAAGGGATCACTGGGACGAGTTCGTTGCATATAAGACAGGTGAACAAGGGCAGGCGATGATGGAAAGAAACAAAGAAAATGCCGCCAAGAAGAAGTACCATCACCACTTGGGGTCAGGAGGCTATAGCGTCGCGATGCCGAAGTGGGAGCAGATGGAGGCTAGCTTGATTGAGAGGGGTATCGAACCGGCAACAGCCAATTGGCCGGAACGATCGAAGTTCTGGTACTATGCTCACGGTGGAACGCTCAACCCAGCTGATGGCTCACTGGTCTTCGGCTATCAGATACAAGAGGCTGCGCGACGACTAACAGATGCAGTGGAAGCCTCCTCTCAGGGCACGTTCCGACCAGACAGAGATAGGGACGAGCTGACACTCGCCCTGCAGACTCCAGAGCATCCAGGACGAACTTGA
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| Protein seq | MADPDEEQILYDTIAEGSSQYWNEEEGNEDPNQYLNEEGNVERDAEGNQQGHVERDVEGNQEEEASGSQPSVGQKRARGQRGAAKKLEGRHIITEVEEDGRPSAPAEAAKNYVRHSGWVVRDNVPVSTVYWRRTRARGDHESFVPDSEKEMLWTTMLETFTLPAGTEDKVKRWTLKKMAEQFQSFKGDLYQKYILKGQTPNFDTFPKLRDHWDEFVAYKTGEQGQAMMERNKENAAKKKYHHHLGSGGYSVAMPKWEQMEASLIERGIEPATANWPERSKFWYYAHGGTLNPADGSLVFGYQIQEAARRLTDAVEASSQGTFRPDRDRDELTLALQTPEHPGRT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g27610 | LOC_Os05g27610.1 | Chr05 | 16064943 | 16067322 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCTGACCCCGATGAGGAACAGATATTGTACGATACAATCGCGGAGGGAAGCAGCCAGTACTGGAATGAAGAAGAGGGGAACGAGGATCCAAACCAGTACTTGAACGAGGAAGGGAACGTGGAGAGGGATGCGGAGGGGAACCAGCAGGGGCACGTGGAAAGGGATGTGGAGGGGAACCAGGAGGAGGAGGCTAGTGGTAGTCAACCCTCCGTTGGACAGAAGAGGGCACGCGGGCAACGAGGTGCAGCGAAGAAGCTTGAGGGTCGGCACATCATAACGGAAGTGGAAGAAGATGGACGTCCTAGTGCCCCGGCCGAAGCCGCCAAGAACTATGTACGTCACAGCGGTTGGGTTGTGCGGGATAACGTGCCTGTCAGTACGGTGTACTGGCGAAGAACAAGGGCACGCGGAGATCATGAGAGCTTTGTCCCAGATTCGGAGAAAGAGATGCTGTGGACCACAATGCTCGAGACATTCACCCTTCCTGCGGGTACAGAGGACAAAGTGAAAAGGTGGACTCTGAAGAAAATGGCAGAACAGTTTCAGAGCTTCAAGGGAGATCTGTACCAGAAGTATATACTGAAGGGGCAGACACCGAACTTCGACACATTCCCAAAGCTAAGGGATCACTGGGACGAGTTCGTTGCATATAAGACAGGTGAACAAGGGCAGGCGATGATGGAAAGAAACAAAGAAAATGCCGCCAAGAAGAAGTACCATCACCACTTGGGGTCAGGAGGCTATAGCGTCGCGATGCCGAAGTGGGAGCAGATGGAGGCTAGCTTGATTGAGAGGGGTATCGAACCGGCAACAGCCAATTGGCCGGAACGATCGAAGTTCTGGTACTATGCTCACGGTGGAACGCTCAACCCAGCTGATGGCTCACTGGTCTTCGGCTATCAGATACAAGAGGCTGCGCGACGACTAACAGATGCAGTGGAAGCCTCCTCTCAGGGCACGTTCCGACCAGACAGAGATAGGGACGAGCTGACACTCGCCCTGCAGACTCCAGAGCATCCAGGACGAACTTGA
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| Protein seq | MADPDEEQILYDTIAEGSSQYWNEEEGNEDPNQYLNEEGNVERDAEGNQQGHVERDVEGNQEEEASGSQPSVGQKRARGQRGAAKKLEGRHIITEVEEDGRPSAPAEAAKNYVRHSGWVVRDNVPVSTVYWRRTRARGDHESFVPDSEKEMLWTTMLETFTLPAGTEDKVKRWTLKKMAEQFQSFKGDLYQKYILKGQTPNFDTFPKLRDHWDEFVAYKTGEQGQAMMERNKENAAKKKYHHHLGSGGYSVAMPKWEQMEASLIERGIEPATANWPERSKFWYYAHGGTLNPADGSLVFGYQIQEAARRLTDAVEASSQGTFRPDRDRDELTLALQTPEHPGRT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0359000 | SBH | 0.447655 | 0.242771 | 0.645466 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g13560 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0359000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0013840 | SBH | 0.000000 | 0.0 | 1.244701 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0013870 | SBH | 0.0 | 0.0 | 0.618566 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0013710 | SBH | 0.247808 | 0.0 | 1.346332 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0013730 | SBH | 0.0 | 0.069249 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0013860 | SBH | 0.000000 | 0.000000 | 0.441340 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0258300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0013420 | SBH | 0.000000 | 0.066008 | 0.278328 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0361300 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0013610 | SBH | 0.052529 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0013620 | SBH | 0.118959 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0013650 | SBH | 0.0 | 3.946321 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0013710 | SBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0013710 | SBH | 0.051552 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G013410 | SBH | 0.000000 | 0.754562 | 0.095590 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0013640 | SBH | 0.000000 | 2.250372 | 0.518779 |
