Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g16920 | OGI:05025790 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:9643930-9644716 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGAGAGATGCGGCGTTGGTGCAGCAGGATGAGCGGTCTCGTGTGGGTGGTGCTTGTGTGCTCATGGACATGGAGGATCGCAGCTGCTCAGGCTCCGCAACCACCAAAAACTGATCCACTCGAGGGTAAGTTGTACTACTACATCGATCTTACCAGATTTTTTGATGTATCATTTTTTTTTTGTTTTGTAATAAAGACTCTGTAAGTTTGTTTGGCTCAATTTCTACATATATACCAAAGGCTGAGTCAATATGGATCTGATTTGTCCGAAAGATCATCTCATACCATGTGCAAATCGTCGTCTTGATCTTGGTTTTCCTCCATCGATTGCAGGCCTCTAGCTTGCCTCAGAAAAAGAACTAGAGGGAACTTGATTCATTTTATAGTTCTGCATGGACATATATACATGAACACTAATTAAACAGTAACGCTGAGTTTAACCATGCCAGCGGCGGCCCTGAACACGATACTGGGAAGATGGGGCAAGAAGGCGTCGTCGGAGTGGAACATAAGCGGCGAGCCCTGCAGCGGTCTCGCCTCTGACAAAAGCGACTGGGATAACTACCCCAACATCAATCCATTCATCAAGTGCGACTGCACTTTCAGCAACAACACCCTCTGCCACATTACCAGACTGTAAGTATACGCTTCCACGTCTTCTCTCTTTGGTCAGGTGTGCTGTGCACTATGAGTTCAATGAAGTGCCCTTTGTAAAGAGTTCGTTTAAATATTTGATCTATATATTTGATGGTTCAAATATATGTGGTCAAGTGTCAGACTGTTAG
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| CDS seq | ATGAGAGAGATGCGGCGTTGGTGCAGCAGGATGAGCGGTCTCGTGTGGGTGGTGCTTGTGTGCTCATGGACATGGAGGATCGCAGCTGCTCAGGCTCCGCAACCACCAAAAACTGATCCACTCGAGGCGGCGGCCCTGAACACGATACTGGGAAGATGGGGCAAGAAGGCGTCGTCGGAGTGGAACATAAGCGGCGAGCCCTGCAGCGGTCTCGCCTCTGACAAAAGCGACTGGGATAACTACCCCAACATCAATCCATTCATCAAGTGCGACTGCACTTTCAGCAACAACACCCTCTGCCACATTACCAGACTGTGTGCTGTGCACTATGAGTTCAATGAAGTGCCCTTTGTAAAGAGTTCGTTTAAATATTTGATCTATATATTTGATGGTTCAAATATATGTGGTCAAGTGTCAGACTGTTAG
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| Protein seq | MREMRRWCSRMSGLVWVVLVCSWTWRIAAAQAPQPPKTDPLEAAALNTILGRWGKKASSEWNISGEPCSGLASDKSDWDNYPNINPFIKCDCTFSNNTLCHITRLCAVHYEFNEVPFVKSSFKYLIYIFDGSNICGQVSDC |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g56140 [UniProtKB/Swiss-Prot:C0LGH3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g16920 | LOC_Os05g16920.1 | Chr05 | 9643930 | 9644716 | + | MSU_osa1r7 | ||
| CDS seq | ATGAGAGAGATGCGGCGTTGGTGCAGCAGGATGAGCGGTCTCGTGTGGGTGGTGCTTGTGTGCTCATGGACATGGAGGATCGCAGCTGCTCAGGCTCCGCAACCACCAAAAACTGATCCACTCGAGGCGGCGGCCCTGAACACGATACTGGGAAGATGGGGCAAGAAGGCGTCGTCGGAGTGGAACATAAGCGGCGAGCCCTGCAGCGGTCTCGCCTCTGACAAAAGCGACTGGGATAACTACCCCAACATCAATCCATTCATCAAGTGCGACTGCACTTTCAGCAACAACACCCTCTGCCACATTACCAGACTGTGTGCTGTGCACTATGAGTTCAATGAAGTGCCCTTTGTAAAGAGTTCGTTTAAATATTTGATCTATATATTTGATGGTTCAAATATATGTGGTCAAGTGTCAGACTGTTAG
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| Protein seq | MREMRRWCSRMSGLVWVVLVCSWTWRIAAAQAPQPPKTDPLEAAALNTILGRWGKKASSEWNISGEPCSGLASDKSDWDNYPNINPFIKCDCTFSNNTLCHITRLCAVHYEFNEVPFVKSSFKYLIYIFDGSNICGQVSDC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0253200 | SBH | 0.0 | 0.0 | 0.173666 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g16420 | RBH | 0.0 | 0.0 | 0.358893 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0253200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0009320 | SBH | 0.057884 | 41.110802 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0009360 | SBH | 0.0 | 13.674270 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0009260 | SBH | 0.246522 | 13.633492 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0009350 | RBH | 0.0 | 0.165039 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0009420 | RBH | 0.000000 | 33.190304 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0143400 | SBH | 1.3223145 | 42.2957265 | 0.008113 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0009290 | RBH | 0.000000 | 0.882620 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0145600 | SBH | 1.727006 | 46.4663545 | 0.021656 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0009260 | RBH | 0.0 | 0.619669 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0009210 | SBH | 0.0 | 13.107274 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0009310 | SBH | 0.836862 | 30.956285 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0009360 | RBH | 0.144720 | 5.697697 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0009330 | SBH | 0.055350 | 2.607230 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G009120 | SBH | 0.0 | 0.469412 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0009410 | RBH | 0.0 | 60.670998 | 0.0 |
