Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g11260 | OGI:05017410 | 3/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:6358099-6362407 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACCAAGTCATTCATAAAACTAATTGTAATTAAAGAGAATTTTTTGTATTACATGGAAAATCATCCTCATAAGTCATGACATTAAATTTTGTTCAGAACATCATGCACAAATGTAAACTAAACTATAGAAAAAAAAACATGCATCTGAAGTTGCCACTATCATTGCCACCATCTTCCATATTACAGTCATCATCATATTCACAAGGGATCTTTAGATGACAGTTGTCCACCTTGCAGTAACCATATTGCCCCAGATCATGATCCATTTATCTTGTCAACCTGTAACAGAAAAAAACAACCATTGATACAACATTGGAAGAAAGAAGACCACATCTAAAGAAATTGAGAAATAGCACCGTACAAAAATTGCTGGCCACGCAATATCAAGTTTTACGACATTGCTAATAATTTTGTAGCCTTTGTATGGCCTGATCAATTCTTCATATTTTGCCAATGGAAAATGAACATGCACCATCAAGTATTCAGTTCCTAGCTCAACACCTGCAACTTTGCGTGTTGGATCACAGCTTACAATTGAAGCAACAGCCACATTCTTATTTCGATTTTTCCAGCTTTTCAAGAATACATTAGTTCCAATCTGGTGCATAAATATATGTCCATGAGCATTATCTCTACATAAAGAGCAATTAAGTATGGAAAAGAACATCATATTAAAAGTTTTATCTCCAATGAATTGGCATCCATAATGTTCACTATGTTGCACTGTTGTTTATGTACAAAGTTATTTGGATCAAGATTCAATAATTTAACTATAAAGTACAAACATATTATACCAAATAGAATTCTATAGCTTATCTTTATATTAGGTGGCTCCAGAAGTAAAAATTTACCTTATAAGCATTAGAATTATTCTTCCCTTGTTGCATGTGATCATTCTGGTTCATGTTTCCTTTATTCTGCATGGAATATCAAAATATTGGCACAAACTACAATAATCTAGTTATTTTTATAATTAAACACTGTGAGTTCCAATCAATAAAAAAGTGAAGACTAGCCTTCACACAAATAATCTTCCTCTGTTTCTCAAGGTGATTTTGGCCATAAGTTTGATTGCTCTGTAATAAAATAAGACATAAGATTGTAATGAACAGCTACAATAAACGTTGACAGTTGCAAACAATATCGAGATCATATAATGCTATGTAGTGAGTTCGACATAACAAATAAGAAGAGAATGACCTTATATATAGTAGATTGCTTGGTTGGTAGTTGCAAAACCTTGTTCTGAACATGGATATTTGTGTCCTGATGTGAAAGAGAGACAATATTACTAGTTAGAAAATAGTGCAACTATTCCCAGCTAAAAACAGTGTAATTTTTATACTTTACTATAGCATTGTTTTCATGCTCAATCATATTGTTTTGATGCTCAACCATAGAATTTTCTTGCAAGGGACCGTTAACACACACTCTCTAACAATAGTAGAAACCAAATGGAGATTCATACCATATATTTATGAAGCACTGTACAGTAAAACTTTAATATGGTTTACCTCCATTGAATTGTCAGCGATAAAGTTTGTTGTGCTGCACTGTCTTTTCTGTAAAAATAAGAATTGTTTCGATCATGAGTCTGCAACTTAACTGCATACAGTCAAAATAAATGTTGAAGTGCTAAAGCAAAACATAAATCTGTGCACAAAGTCAATCCCTTGCAAAATATAATAGAATAAACAGTACAAACCTTAGGAGCAGCAGTTGGTTGGTTTTGGCCTAGTCTAACATGGCTCTGAGCATTTTTTTTCTCTTTCTTTATTCTGCAATGTAATCAAAACTACTAGTCAATCATACATGCTATATTTTGTAAAAAACAGAAATTTATAGACATGATGAATAAAAAATAACCTTGGATGCTTCAACAACTTTTCGTGCATTCATCACATGGTTTTCCTTGTTAGTTTTTTTTTTCTATAGAAGAAGGTAAAAAAACATTACGAAAACTCTAAGACATGGATTGTTTCATCAATTGTTGCATTAGAATAGCACAAACATGGTGAGTTGCAATCAATAAAAAAAATGAAAACTAACCTGTGCAGAAATAACCTTCCTTTGTTTCCCATAGTCATGTTGTTCCCAATTTTGTTTGTTCTAAAATAAAATGCATAAGATTATGAACTATAGTAAACAACCATAGCTACAAACAGTACAAAATCATATAATGTTAAGTAATCATGGTGGGTTCAGAATAATAATATAGTTGGTAAGACAAGTACCTTGTCTTCAACACATTGCTTGGTTTTTGGTTGCAAATCCTCATTTGGAACATGGCTCTGTATATTCTGTTTTGAAAGGGACCATATATTCTCAATTACAAAATAGTGCAACTATTCCTAGCTTTACAATAGTGCAATTCCAGTATATTACCATCATATTGTTTTCCTCCTGAACCATATCGTTTTCCTCCTCAGCAATACAAATTTCTTGCAAGGGATGGTCAGAATACACTCTCTGTCAACAGTAGAAAAGAAAAGGAGTTTTAGACCATATTTTTTTCCAAACTATATAGGGTAATCTTCCATAGAGATACATACCCTCCTTTTCGAAATAGGGCCATCAACACTAGCTTCTTTGTTTGTAGATACTCGATCTAAACCTCCCTGTAACACCAACTAGGTAGGTTAGATACATTCAGTGAGTTACAAACATTTTAGGACAACTTCTTCAAATTCTCACCTGATTCATTTGTTCTTTTTCCAACTTGTTTGTCTTCGCTTTCAATTCCAAAAGCTCAGCATCATGATTCTGGACATGATTTTCGATCTTTTCCAACTGCAGTCTAGCAGCCACAACATCTTCACTCCAGTTATCATCCAGTCTAGTAACATTTATATTCTTTAAGCGTCAGGAATTTGGCACATCGAGAACTTGTTTAGGCTTTGGAACTAGTCCAAGACCATGCACATGCCCAGGCTTGTCATCTCCAAGTATTTGGTTCAATGCATCTCCTTTCCAAGCAGTCCTTCCTTCACTAGTGTCTGCTAAAGCTGGTTGTTCAACTACAAGTTTCTTCAAATTATCCTAAACACAGGAACAATATGAATAGAACATATGAAAAAAAGTTGAAACTTAAATTATCTATAGTTTAGATTTGATAGTATACCACATGCCCATTTAGATTCTTGCCAGTTTTGCGCTTGTGTGTTTGGATGTACACAATAGCTCTGTGAGGATTCTTTGCAGGATCTTTTTGTCTCTATGGAACATGTGAACAAATCATTAAATCCTACACAGTCTATATAGGATTGGAATGGAAATTGGACAAATGCTATTCCAGGACATGTTTTACCATCTCTTCTCTTGTACGAGCAAAACTATTTGTCCCTGCTGTGTGTAATGCCTTCTTCTTTCGACAATTTTCCTTGTTCTGCTTGCTTATTTTCTGTTCTCGTATCATAAGAGTTAGCAAATATACATGAGCACAACATTGTTTAGTTCAATTGATAGTCTCATTTGTAAGAACATCACAGTAGTGAATATGCAATGCCTATATACCTTCGATTTCTCGCTCATCCAATGATTGATAAGAGCAATCCACTGGTCAGGAAGCACATCAGCTGGGACATTGTTGCAATTAGCTTCTTTGCTCTTATTCACATCAAAATACTTTTCTTTTAGTTTTGCTTTATGTCCCCTCCATCTCTCTCTAATTGTTTTTAATATGAATTCTTCCATCCGAGGAGCATAAAGGAATCTCATCTGGATACCAACAAAGAAACTCATCTAGGGATTTTGTTTTTCTCTCTCTCTTTCCTATTAGAAATCTCCAGTCTGTGTAGCTTAAGCTACACAAAGTACCATTCCTAGCTACCATTCCAAGAAATTTAGACAAAATTCCAGCTTCATCTCCTACTGCCTGGTTGAGATCATTGCACTGAACCACAATCCTAAGCCTTTTCGGAAGGTTCCAAATATCTTTCAGTTTTGTCTTCCCACGTGTTTCAATTGTTCCATTTTCATCTGTTCAATGTTAAATTGCAAGGATAAGAAGAATAATTTCATTATTTCTTACCATCAAGATTTAGTATTTACCTCGAACATTAATTTCAACATCATCATCAGATTCTTCATTGCCTTCTCCAGCATTCATACTAGCATCGTCATCAGTATCTTCATTGGCTTCTCCAACATCGTCATTAGTATCTTCATTACCCTCTTGAACATCACTACATATTGTTTCTTGTTCAGATGGTGTGGCAAGCTGTTTAGGGGCATTTTCTTCTGCAATGTGTTCCTCTGACAAATATTCCTCATGGCTTTGAACAATGCACCGCCTTCTACTCCTTGCCAT
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| CDS seq | ATGGCAAGGAGTAGAAGGCGGTGCATTGTTCAAAGCCATGAGGAATATTTGTCAGAGGAACACATTGCAGAAGAAAATGCCCCTAAACAGCTTGCCACACCATCTGAACAAGAAACAATATGTAGTGATGTTCAAGAGGGTAATGAAGATACTAATGACGATGTTGGAGAAGCCAATGAAGATACTGATGACGATGCTAGTATGAATGCTGGAGAAGGCAATGAAGAATCTGATGATGATGTTGAAATTAATGTTCGAGATGAAAATGGAACAATTGAAACACGTGGGAAGACAAAACTGAAAGATATTTGGAACCTTCCGAAAAGGCTTAGGATTGTGGTTCAGTGCAATGATCTCAACCAGGCAGTAGGAGATGAAGCTGGAATTTTGTCTAAATTTCTTGGAATGATGAGATTCCTTTATGCTCCTCGGATGGAAGAATTCATATTAAAAACAATTAGAGAGAGATGGAGGGGACATAAAGCAAAACTAAAAGAAAAGTATTTTGATGTGAATAAGAGCAAAGAAGCTAATTGCAACAATGTCCCAGCTGATGTGCTTCCTGACCAGTGGATTGCTCTTATCAATCATTGGATGAGCGAGAAATCGAAGAGACAAAAAGATCCTGCAAAGAATCCTCACAGAGCTATTGTGTACATCCAAACACACAAGCGCAAAACTGGCAAGAATCTAAATGGGCATGTGGATAATTTGAAGAAACTTGTAGTTGAACAACCAGCTTTAGCAGACACTAGTGAAGGAAGGACTGCTTGGAAAGGAGATGCATTGAACCAAATACTTGGAGATGACAAGCCTGGGCATAATATAAATGTTACTAGACTGGATGATAACTGGAGTGAAGATGTTGTGGCTGCTAGACTGCAGTTGGAAAAGATCGAAAATCATGTCCAGAATCATGATGCTGAGCTTTTGGAATTGAAAGCGAAGACAAACAAGTTGGAAAAAGAACAAATGAATCAGGGAGGTTTAGATCGAGTATCTACAAACAAAGAAGCTAGTGTTGATGGCCCTATTTCGAAAAGGAGGAGAGTGTATTCTGACCATCCCTTGCAAGAAATTTGTATTGCTGAGGAGGAAAACGATATGGTTCAGGAGGAAAACAATATGATGAATATACAGAGCCATGTTCCAAATGAGGATTTGCAACCAAAAACCAAGCAATGTGTTGAAGACAAGAACAAACAAAATTGGGAACAACATGACTATGGGAAACAAAGGAAGGTTATTTCTGCACAGAAAAGACAGTGCAGCACAACAAACTTTATCGCTGACAATTCAATGGAGGACACAAATATCCATGTTCAGAACAAGGTTTTGCAACTACCAACCAAGCAATCTACTATATATAAGAGCAATCAAACTTATGGCCAAAATCACCTTGAGAAACAGAGGAAGATTATTTGTGTGAAGGCTAGTCTTCACTTTTTTATTGATTGGAACTCACAGTGTTTAATTATAAAAATAACTAGATTATTGTAG
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| Protein seq | MARSRRRCIVQSHEEYLSEEHIAEENAPKQLATPSEQETICSDVQEGNEDTNDDVGEANEDTDDDASMNAGEGNEESDDDVEINVRDENGTIETRGKTKLKDIWNLPKRLRIVVQCNDLNQAVGDEAGILSKFLGMMRFLYAPRMEEFILKTIRERWRGHKAKLKEKYFDVNKSKEANCNNVPADVLPDQWIALINHWMSEKSKRQKDPAKNPHRAIVYIQTHKRKTGKNLNGHVDNLKKLVVEQPALADTSEGRTAWKGDALNQILGDDKPGHNINVTRLDDNWSEDVVAARLQLEKIENHVQNHDAELLELKAKTNKLEKEQMNQGGLDRVSTNKEASVDGPISKRRRVYSDHPLQEICIAEEENDMVQEENNMMNIQSHVPNEDLQPKTKQCVEDKNKQNWEQHDYGKQRKVISAQKRQCSTTNFIADNSMEDTNIHVQNKVLQLPTKQSTIYKSNQTYGQNHLEKQRKIICVKASLHFFIDWNSQCLIIKITRLL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g11260 | LOC_Os05g11260.2 | Chr05 | 6358099 | 6362407 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCAAGGAGTAGAAGGCGGTGCATTGTTCAAAGCCATGAGGAATATTTGTCAGAGGAACACATTGCAGAAGAAAATGCCCCTAAACAGCTTGCCACACCATCTGAACAAGAAACAATATGTAGTGATGTTCAAGAGGGTAATGAAGATACTAATGACGATGTTGGAGAAGCCAATGAAGATACTGATGACGATGCTAGTATGAATGCTGGAGAAGGCAATGAAGAATCTGATGATGATGTTGAAATTAATGTTCGAGATGAAAATGGAACAATTGAAACACGTGGGAAGACAAAACTGAAAGATATTTGGAACCTTCCGAAAAGGCTTAGGATTGTGGTTCAGTGCAATGATCTCAACCAGGCAGTAGGAGATGAAGCTGGAATTTTGTCTAAATTTCTTGGAATGATGAGATTCCTTTATGCTCCTCGGATGGAAGAATTCATATTAAAAACAATTAGAGAGAGATGGAGGGGACATAAAGCAAAACTAAAAGAAAAGTATTTTGATGTGAATAAGAGCAAAGAAGCTAATTGCAACAATGTCCCAGCTGATGTGCTTCCTGACCAGTGGATTGCTCTTATCAATCATTGGATGAGCGAGAAATCGAAGAGACAAAAAGATCCTGCAAAGAATCCTCACAGAGCTATTGTGTACATCCAAACACACAAGCGCAAAACTGGCAAGAATCTAAATGGGCATGTGGATAATTTGAAGAAACTTGTAGTTGAACAACCAGCTTTAGCAGACACTAGTGAAGGAAGGACTGCTTGGAAAGGAGATGCATTGAACCAAATACTTGGAGATGACAAGCCTGGGCATAATATAAATGTTACTAGACTGGATGATAACTGGAGTGAAGATGTTGTGGCTGCTAGACTGCAGTTGGAAAAGATCGAAAATCATGTCCAGAATCATGATGCTGAGCTTTTGGAATTGAAAGCGAAGACAAACAAGTTGGAAAAAGAACAAATGAATCAGGGAGGTTTAGATCGAGTATCTACAAACAAAGAAGCTAGTGTTGATGGCCCTATTTCGAAAAGGAGGAGAGTGTATTCTGACCATCCCTTGCAAGAAATTTGTATTGCTGAGGAGGAAAACGATATGGTTCAGGAGGAAAACAATATGATGAATATACAGAGCCATGTTCCAAATGAGGATTTGCAACCAAAAACCAAGCAATGTGTTGAAGACAAGAACAAACAAAATTGGGAACAACATGACTATGGGAAACAAAGGAAGGTTATTTCTGCACAGAAAAGACAGTGCAGCACAACAAACTTTATCGCTGACAATTCAATGGAGGACACAAATATCCATGTTCAGAACAAGGTTTTGCAACTACCAACCAAGCAATCTACTATATATAAGAGCAATCAAACTTATGGCCAAAATCACCTTGAGAAACAGAGGAAGATTATTTGTGTGAAGGCTAGTCTTCACTTTTTTATTGATTGGAACTCACAGTGTTTAATTATAAAAATAACTAGATTATTGTAG
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| Protein seq | MARSRRRCIVQSHEEYLSEEHIAEENAPKQLATPSEQETICSDVQEGNEDTNDDVGEANEDTDDDASMNAGEGNEESDDDVEINVRDENGTIETRGKTKLKDIWNLPKRLRIVVQCNDLNQAVGDEAGILSKFLGMMRFLYAPRMEEFILKTIRERWRGHKAKLKEKYFDVNKSKEANCNNVPADVLPDQWIALINHWMSEKSKRQKDPAKNPHRAIVYIQTHKRKTGKNLNGHVDNLKKLVVEQPALADTSEGRTAWKGDALNQILGDDKPGHNINVTRLDDNWSEDVVAARLQLEKIENHVQNHDAELLELKAKTNKLEKEQMNQGGLDRVSTNKEASVDGPISKRRRVYSDHPLQEICIAEEENDMVQEENNMMNIQSHVPNEDLQPKTKQCVEDKNKQNWEQHDYGKQRKVISAQKRQCSTTNFIADNSMEDTNIHVQNKVLQLPTKQSTIYKSNQTYGQNHLEKQRKIICVKASLHFFIDWNSQCLIIKITRLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 11.203590 | 10.080205 | 0.942542 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0202500 | RBH | 23.888115 | 20.157753 | 4.332831 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0202500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0095200 | RBH | 41.739334 | 16.5281935 | 125.3676185 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0094200 | RBH | 18.5546475 | 24.420311 | 27.884187 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
