Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g09000 | OGI:05014120 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:4983551-4986913 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCACACATAACATCCAATCATTTTCAGCATCATGGGACATCAGATGTAGACTTGCAGTGTAAGCTCTGGACAGCTTACCAACTTACGATGTTAATACCTTTGTCCACAAATTACAAGACGACATTACTGAACTGTCAGCTATGGGTCAAGATAAGATGAGTTTCACATTGCCTACTATATTTACCAATTATATTTGAGCAGCTGAACCAAGGCTCTATAAACAGTAATCCATCAGCAGAGACTATGGGTTGCTATTGATGGGGTAAAAGTAAGAACCATTAGCCAGATTTCTGCGCTATCAGACTATAAGGATCCAGGCTCACCTCCAGATAAGAACTTATGGGCCCAAGCTTCAAGGTACTCCCTACCCATGTTCATGAAAAAGCTTCGATGCACTTCAAACTCTGGTTTACAAAGGCAAATTCCAACTGAGAGTCTATCAGCAGGTGTCAGTGGGATTTCTTTCAGCATGTTCCATAGAGGAGCATTTGGGTCCGATGATGTCGGTGCTGCTCGTATTGGTTTTGCAGGGGTGTCATGGATCCCAGCTAAGGTACTCTTTACCATATCCGCCTTCCTGCCATCATGTGGCACGGGTGCCTGCGGTTTTGGGTTTGGGGTTGTTTTTGTTCTGCTGACTACTTTGCACTTCTTCAATCCAGGCTTGAGAGCAGCCATTGTGCTCTCAGCAAAGGATCCAGATGGCTGGGCAGATGGTGCACTAGTGTCAGACATCACTTCACAAGGCACTGCATCACTACTTGCTGCCACCTCATGACAGTCATCTTCATCCTCCAAAACAAACTTGTCCAAGTCTGCCCCATCAGGGTCCCTTGCATCTGCACAATTTGCCATCATGTTCAACGGATCGAGGATTTCCATGTCATCATCGTTAATGTCAGCAGCTTCAATTGGGTCTGTCACAGGGGCAGCATCCACTGACCACTCACCAAAGAGAGCTTGTATATGATCGAAGAATGGAATTGGTTTAACAAGAATTGCACGCTCTGCTATCTGTACAAGGAGGAAAAGAATCATTAGTGCACTTGGAGAATAGTGAAACTGCAATCATCTCCAACGATAAAAATACTTACAGGTAGACTAGCCAAAGTTGAAGGAGGTAGTATTAGCATTTTGTGTTTCTTGTCAAACCTACTCCCACTCATATTCATATAACGGGCCACAATATTCCAAACCTCCTTGAAGCGCCTAAAGTGGCGGTGGACCTGATCAACAGTGAAAGTTGTCTCAAATCTAGCATTTAGTACGGTCGTGCAATAATGGTGGTGCATCTTCTTGAACTTGGTCTTGGGTGGCATCTCCTTCTTCTTCTGAAGGTACCAATCAAGCACAAACTTTGACATGACTGTAGGCCAATTCGTGGCTCTTGCCCTTTTGATCTTAGAGTTGTCACCCAAGTCCATGATGTGATGGTCTACAAGAAGTAGATTGAGTGACAGGAGTTAAGAATATTATGGTGTAAAATTGCAGTAACCTCATTGATAGTAGGTAAATCATACTCCCTCCAGTCACAAAAACCCCACTCTTTTTGATTTTCAAATATATCCTAAGTCAAACTTTCAAAATTTAAATATGTACATATTTTTTAATATTTGCATAGGATGCATGAAAATCATAGGGGTAGATTCACTGAAGAAAGAACTTTAGTAATATAATAATATTGTCAGATTTCAAAAATGCATCGTAATAGAAATTAGTGATCAATGCTGCTTTTCAAATACTATGTTGGCGTCCAAAATGACATGTTTTTGTTACTGGAGTGGAGGGAGTACTTAAGATTCTGCGGAAACAGTAGAAACTATCAACGATAAATAAAAGTATGAACACAATACAAGTAATAGTTGTGGCAGCAAGTGGTGTATGCATTAATTAACATTTGCACTCTGCATTGTAAAGCATTACAATGCAAATGCAACATCAATTTTCTCTCCAAATCCGTGAAGCAGAGTCATCGAATTATAAGACCTATTGGTAATGCATCACTGCTTGATCTGTAACCACTCTAATTAATATAGGGAGTGTTTCAACCACCTTTGGTCTCCCCAAACCAATGTCACAGAGCTATTAGTAAACTAGCTACCTATTGGCAGTCCACCACTACCTGATCTAAAAAATACTATAATCAACTTCAGACATCATACAAGACATTGTTTACGCAACTATTATCCAGTGTAATTAAAGAACATGAGTTACAATCATCAGTTTAGCCCCGCACGAAATGGAGGGTCATTGGGTATGGACTAGAGAAATCCTGAAGTTCAAAGTCTCATTCAATTTTCATGTAAATATATATACAAGGCAGTAGGTAATTGCACAGTTATTAGAGGAGCACACCAGGATGACTCCCACCTTCATACTTCTTTGAATGATATTCACCATTCTGAACAACTACATGATGGCCGTGTACTATGCCAATCCGCATACCTTTAATCGGCTAAATACTGCCACCCTAGAAGTAAAATCAATCTGGTGTCATCACCTTGTGATCATGAATGTGCTCTCATTTTCACACTAGCGAATTCGGTATTCCATCCGTTCAGGCATCTGAAATCCTTGTTGACCAATTAACTTATCAAGGCTTCAGCAGCAGTGTTATCAGGACATACATTTCCAACTACTGTTTGGCATGTTGATTCTTTTCCATGCATCAACTTGCTTCTTACATGTGCGACACTCATCTGCCAGCTCTAGTGGTGTTGAACAACAAACAAATTGACCATTTAACATTGAACAGTGAATAACAGCTCTACCCAAAAAATAACATATTCCAATGGTTTCTATCAGATGTCTCCAGAGAGACGATTCCTCTGTTAAGAACGCGTCGAATTTTTCCTCACACAAAATACGCGCATACATTGTTTGGAATAAGCACTCTGCGGCTTTCAATCGAACTACTCACTACTCGATTTTGCTCCTAGATTTATCCATCGAATCCCTAAGTCATATCACCGCAGGCCATAACGAATTCGCGATAATAATGAAATAAATTCCTAGCCTAATGCTGCATATGGATCACCTAAGAGCAATCACTGAACAAACTAAACTAGGTCACGCGATTCAACCAAGCCCTTCTCCCTATCATTCCAAAAGAAAAAAAAACAAGAAGGAATTGCAGTTGAATCCCCCACGATACCTTGCGCTAGCTTCGGCGAACCCAAATCACCCGAGCCCTCGTCTTGGCCGCCGGACATCGTCCGTCTCCCGGGTGCGGCGCCGCCCTCCCACGCGCGCGCGCGGCGATTGGCGTGGCTGCTAGGGTTCGCGAGGCGCGAGGGCGGGGTGGCGGCCGCGGCGAGGAGGGGAGACGGCGGCGAAGGCGAAGGCGAAGTGATGGAGGACGG
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| CDS seq | ATGTCCGGCGGCCAAGACGAGGGCTCGGGTGATTTGGGTTCGCCGAAGCTAGCGCAAGACCATCACATCATGGACTTGGGTGACAACTCTAAGATCAAAAGGGCAAGAGCCACGAATTGGCCTACAGTCATGTCAAAGTTTGTGCTTGATTGGTACCTTCAGAAGAAGAAGGAGATGCCACCCAAGACCAAGTTCAAGAAGATGCACCACCATTATTGCACGACCGTACTAAATGCTAGATTTGAGACAACTTTCACTGTTGATCAGGTCCACCGCCACTTTAGGCGCTTCAAGGAGGTTTGGAATATTGTGGCCCGTTATATGAATATGAGTGGGAGTAGGTTTGACAAGAAACACAAAATGCTAATACTACCTCCTTCAACTTTGGCTAGTCTACCTATAGCAGAGCGTGCAATTCTTGTTAAACCAATTCCATTCTTCGATCATATACAAGCTCTCTTTGGTGAGTGGTCAGTGGATGCTGCCCCTGTGACAGACCCAATTGAAGCTGCTGACATTAACGATGATGACATGGAAATCCTCGATCCGTTGAACATGATGGCAAATTGTGCAGATGCAAGGGACCCTGATGGGGCAGACTTGGACAAGTTTGTTTTGGAGGATGAAGATGACTGTCATGAGGTGGCAGCAAGTAGTGATGCAGTGCCTTGTGAAGTGATGTCTGACACTAGTGCACCATCTGCCCAGCCATCTGGATCCTTTGCTGAGAGCACAATGGCTGCTCTCAAGCCTGGATTGAAGAAGTGCAAAGTAGTCAGCAGAACAAAAACAACCCCAAACCCAAAACCGCAGGCACCCGTGCCACATGATGGCAGGAAGGCGGATATGGTAAAGAGTACCTTAGCTGGGATCCATGACACCCCTGCAAAACCAATACGAGCAGCACCGACATCATCGGACCCAAATGCTCCTCTATGGAACATGCTGAAAGAAATCCCACTGACACCTGCTGATAGACTCTCAGTTGGAATTTGCCTTTGTAAACCAGAGTTTGAAGTGCATCGAAGCTTTTTCATGAACATGGGTAGGGAGTACCTTGAAGCTTGGGCCCATAAGTTCTTATCTGGAGGTGAGCCTGGATCCTTATAG
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| Protein seq | MSGGQDEGSGDLGSPKLAQDHHIMDLGDNSKIKRARATNWPTVMSKFVLDWYLQKKKEMPPKTKFKKMHHHYCTTVLNARFETTFTVDQVHRHFRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLASLPIAERAILVKPIPFFDHIQALFGEWSVDAAPVTDPIEAADINDDDMEILDPLNMMANCADARDPDGADLDKFVLEDEDDCHEVAASSDAVPCEVMSDTSAPSAQPSGSFAESTMAALKPGLKKCKVVSRTKTTPNPKPQAPVPHDGRKADMVKSTLAGIHDTPAKPIRAAPTSSDPNAPLWNMLKEIPLTPADRLSVGICLCKPEFEVHRSFFMNMGREYLEAWAHKFLSGGEPGSL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g09000 | LOC_Os05g09000.1 | Chr05 | 4983551 | 4986913 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCCGGCGGCCAAGACGAGGGCTCGGGTGATTTGGGTTCGCCGAAGCTAGCGCAAGACCATCACATCATGGACTTGGGTGACAACTCTAAGATCAAAAGGGCAAGAGCCACGAATTGGCCTACAGTCATGTCAAAGTTTGTGCTTGATTGGTACCTTCAGAAGAAGAAGGAGATGCCACCCAAGACCAAGTTCAAGAAGATGCACCACCATTATTGCACGACCGTACTAAATGCTAGATTTGAGACAACTTTCACTGTTGATCAGGTCCACCGCCACTTTAGGCGCTTCAAGGAGGTTTGGAATATTGTGGCCCGTTATATGAATATGAGTGGGAGTAGGTTTGACAAGAAACACAAAATGCTAATACTACCTCCTTCAACTTTGGCTAGTCTACCTATAGCAGAGCGTGCAATTCTTGTTAAACCAATTCCATTCTTCGATCATATACAAGCTCTCTTTGGTGAGTGGTCAGTGGATGCTGCCCCTGTGACAGACCCAATTGAAGCTGCTGACATTAACGATGATGACATGGAAATCCTCGATCCGTTGAACATGATGGCAAATTGTGCAGATGCAAGGGACCCTGATGGGGCAGACTTGGACAAGTTTGTTTTGGAGGATGAAGATGACTGTCATGAGGTGGCAGCAAGTAGTGATGCAGTGCCTTGTGAAGTGATGTCTGACACTAGTGCACCATCTGCCCAGCCATCTGGATCCTTTGCTGAGAGCACAATGGCTGCTCTCAAGCCTGGATTGAAGAAGTGCAAAGTAGTCAGCAGAACAAAAACAACCCCAAACCCAAAACCGCAGGCACCCGTGCCACATGATGGCAGGAAGGCGGATATGGTAAAGAGTACCTTAGCTGGGATCCATGACACCCCTGCAAAACCAATACGAGCAGCACCGACATCATCGGACCCAAATGCTCCTCTATGGAACATGCTGAAAGAAATCCCACTGACACCTGCTGATAGACTCTCAGTTGGAATTTGCCTTTGTAAACCAGAGTTTGAAGTGCATCGAAGCTTTTTCATGAACATGGGTAGGGAGTACCTTGAAGCTTGGGCCCATAAGTTCTTATCTGGAGGTGAGCCTGGATCCTTATAG
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| Protein seq | MSGGQDEGSGDLGSPKLAQDHHIMDLGDNSKIKRARATNWPTVMSKFVLDWYLQKKKEMPPKTKFKKMHHHYCTTVLNARFETTFTVDQVHRHFRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLASLPIAERAILVKPIPFFDHIQALFGEWSVDAAPVTDPIEAADINDDDMEILDPLNMMANCADARDPDGADLDKFVLEDEDDCHEVAASSDAVPCEVMSDTSAPSAQPSGSFAESTMAALKPGLKKCKVVSRTKTTPNPKPQAPVPHDGRKADMVKSTLAGIHDTPAKPIRAAPTSSDPNAPLWNMLKEIPLTPADRLSVGICLCKPEFEVHRSFFMNMGREYLEAWAHKFLSGGEPGSL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g09000 | LOC_Os05g09000.3 | Chr05 | 4983598 | 4986913 | - | MSU_osa1r7 | ||
| CDS seq | ATGCACCACCATTATTGCACGACCGTACTAAATGCTAGATTTGAGACAACTTTCACTGTTGATCAGGTCCACCGCCACTTTAGGCGCTTCAAGGAGGTTTGGAATATTGTGGCCCGTTATATGAATATGAGTGGGAGTAGGTTTGACAAGAAACACAAAATGCTAATACTACCTCCTTCAACTTTGGCTAGTCTACCTATAGCAGAGCGTGCAATTCTTGTTAAACCAATTCCATTCTTCGATCATATACAAGCTCTCTTTGGTGAGTGGTCAGTGGATGCTGCCCCTGTGACAGACCCAATTGAAGCTGCTGACATTAACGATGATGACATGGAAATCCTCGATCCGTTGAACATGATGGCAAATTGTGCAGATGCAAGGGACCCTGATGGGGCAGACTTGGACAAGTTTGTTTTGGAGGATGAAGATGACTGTCATGAGGTGGCAGCAAGTAGTGATGCAGTGCCTTGTGAAGTGATGTCTGACACTAGTGCACCATCTGCCCAGCCATCTGGATCCTTTGCTGAGAGCACAATGGCTGCTCTCAAGCCTGGATTGAAGAAGTGCAAAGTAGTCAGCAGAACAAAAACAACCCCAAACCCAAAACCGCAGGCACCCGTGCCACATGATGGCAGGAAGGCGGATATGGTAAAGAGTACCTTAGCTGGGATCCATGACACCCCTGCAAAACCAATACGAGCAGCACCGACATCATCGGACCCAAATGCTCCTCTATGGAACATGCTGAAAGAAATCCCACTGACACCTGCTGATAGACTCTCAGTTGGAATTTGCCTTTGTAAACCAGAGTTTGAAGTGCATCGAAGCTTTTTCATGAACATGGGTAGGGAGTACCTTGAAGCTTGGGCCCATAAGTTCTTATCTGGAGGTGAGCCTGGATCCTTATAG
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| Protein seq | MHHHYCTTVLNARFETTFTVDQVHRHFRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLASLPIAERAILVKPIPFFDHIQALFGEWSVDAAPVTDPIEAADINDDDMEILDPLNMMANCADARDPDGADLDKFVLEDEDDCHEVAASSDAVPCEVMSDTSAPSAQPSGSFAESTMAALKPGLKKCKVVSRTKTTPNPKPQAPVPHDGRKADMVKSTLAGIHDTPAKPIRAAPTSSDPNAPLWNMLKEIPLTPADRLSVGICLCKPEFEVHRSFFMNMGREYLEAWAHKFLSGGEPGSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.736853 | 0.323015 | 0.692375 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0182900 | RBH | 1.095920 | 0.483040 | 2.705245 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0182900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0005680 | RBH | 0.122486 | 1.691897 | 3.686493 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0005710 | RBH | 0.000000 | 0.691579 | 1.427366 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0005590 | RBH | 0.285803 | 2.808546 | 4.701508 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0005690 | RBH | 0.091722 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0005760 | RBH | 2.692825 | 0.000000 | 4.783462 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0096600 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005560 | RBH | 0.120069 | 0.000000 | 0.859309 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0077100 | RBH | 4.334553 | 6.718066 | 10.3526645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0005670 | RBH | 0.292666 | 0.078141 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0005600 | RBH | 0.116911 | 5.821940 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0005680 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0005750 | RBH | 0.178545 | 0.000000 | 1.330932 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0005720 | RBH | 0.151853 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G005540 | RBH | 0.400631 | 0.0 | 1.469830 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0005770 | RBH | 0.305625 | 5.084304 | 3.257593 |
