Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g08900 | OGI:05013860 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:4925212-4928175 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTGCAACAACTTGACAAGTGGGTGCAATTTGGTGCAATAACTTGCAAATTGAGTGTTCTAGGACAACAACTTGGCAGGAAGGTGCAATTTAGTATAAGAACTTTATAAGTGATCGTATAAATGTAGCAACTTATAAGGTATGCACGATTTTGATACAATAAATAAGCAGTTATTTGACAACTTAATTATTTGGAGCATTTTTTATATAAATTCAAATTTTTAAGTACTTATTTTTATAATATACTAGTGTGGATATGTATAAACATATTTATATTTATATCCTAATAACCAAAGACTGAAAGTCAATTAAACTTGATGTAGAAATTATTATATTTCGGTTGATATTTGAGAAAGTGAAGAAAACAAAAAAAATCTTAAAGGTAATTGGATGTAAATTGTATGTGCAATATAATTCTTAAGATTAAATTCAATATTATAAGGTATATCTGTAGGATTACTGTGTATTGGCATATTGACAACGTGAAAAAACTCACCTAGCATATGCTTAGCCAAATTGATTCACCAAAATTCTAAATTGTCAAGTACTTGTACTAGAACGCACCCACTTGTCAAGTTGTTACACTCGAACGTTCAATTCTCAAGTTCTTGCACTATATCGCACCCACCTAGCAAGTAGTTGTACCGTGGGTGTAATTTACTCTTGATAATATATTATAGCATGCCTAGATGGGAACAAACAGGCTAAAGAAACACATGTACATATTCCACCACCGAATCACGTGTAAACATATGTGCAACAAAATCAGAACAACAACATCAGCTCACTGTGTGGACTAGCTGAGATCCAATAGACAAATCTTGGCCACTCACCAGCCGGAATAAGAAGTCTAGGGGCTGCTTCGCCGCCCCTCACAAAGGCCTCCGTAGAAGCCGTCAGAACTGCCGAGACTACCTATCCGACCACCCTGGAAGAGCTATCCTTGCCTCCCTGACAAAACAGATCGCAACTCCCTGGCTGCAGTGCTGTTCTGCCGGAGAGGGCAAGGTCAGGGGCACCTTCCGCCGGAGAATACGTCGACGGCGTCGCGGCCACGCAGCGCGTCGCCGCCGATTGCTGCTCGTCGCCATGAACACTAGGCGCATCCATTCCCCTCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCTCTGGGGAGCACACGCACTGTGACCGTGTGGTACAGAAGAAGACGGAGTAGTTGTTTGTCCGGGCCCAAAACCACTAGCACCAATCTTGGAAACAATCCAACGCTCCCTAATTGAGCTGATAAAACAAAAATTTTCAGCCGGCAGCTGTGTAGCAATTCCCATTATTTGTTTATCGTGATGAATATTCGTAACGCGTAAAAGTCCTGCCCGTCCGCGCGCACGTCAACGTCTCCGCCGCGTGGTGTAATTTTCAGTGCTAGTATACTACAGAAAATGAGAATTTTCTTTCTGCGTTCCTCAACCTGTTAATAAATACTCCACTGGTGTACTGCAGTATGCACAGGCTAGACACTTGCTAGCTAGCTCGATCGGTCACTGGCCACTTCACATCTTCTTGCTCGCTCGCTCGATCGATTGCTTACAAGGTTTCATGGCCACTAACAATCCGGTCAGTCTCAAAGCAGAGGAGCAGAAATGCTATGGCGGCGGCGGCGGCCGGGTCATTCAGGCAATCACGATGCTCGTGGCGACGGCGGTCACGGCGCAGGCGGCGTACCGGGCTCGCCGGGAGCCATGGGACCTCGCCTTCGTGCTCTTCGCCTACGCCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGACGACGGTGCGGCCGTGAGGCGGCGGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGAGCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAGGGCCGCCGTCTGGGGCATGACGTCGACGGTGGCGGTCGCCGGTTTCTACCTACTGTTCGTCTACAGGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACAAGCAGTCGTCGCCCAAGCTCGACCAGATGGTATAACGAACAATGTGGAGAAGAGGAGCTTAATGTTTAATCTTGTAATCAATATAAATTTGATAGCAATAATAAGTGAATTCCCCATTCACATATACTACGTCTTCTCTCGGAATGGTGGAATCTCTCTTTTTTACGGTTTTTATAAATTAGGCCATGATATTTTCTAATATTATGAATTGTCCAGTATTTGTTATAAACAATTGACTACCATATCCATTATCTAAAAAAGTGACTACCTTATTAAAATAAGCAACCAAGTAATACTAACATACTAGATTAAAAAAATATTTTATCTATGACATATCATAATATAGTTTCTTTTACTCATAGCAAAGCATGTGCATTTCGCTTGTTTTACAACAATTTGTAATTGGAACCGGATTAATTCGAAAAAAGTCCTGTAAAATTCATGCATTACTAGTGTCATGGTGAGGCTGACGCGCTTTGACCAGGCTAGGTGAGGCGACGGTGGGAGTGGGACGATGGTGAGATGTAAAAGCCAGATTCGAAGCTCCTTGAGGAAAAAGGTGGCGACGACGCCTATTGAGCCATTGTCCGAGCCGTTGGCTCTGCCGCCCCGTGGAGTACTTCTCTCCCACCGATGTCTTCTGAGCTACTCCTCCAGCTAGATGACGTTTAGTTACGAGACGAGACTTTCGTCTTCACCGTGCATAGCATCGCAGTTAGGTTAGGCTTGCTTCCTTGTCCGATTGGCAAGGGTCATAGGAGGTGGCAGCGACGAGTCTCTCCATCAGTGGTGGAGGTTGACGCTAGATTTTGTGGCTATGGCAGGTGAATTGTAACATCCTGAAAATTCCTGACAATAAAAAATCACTAAAATTTTGAAGTTTTT
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| CDS seq | ATGGTGCAACAACTTGACAAGTGGGTGCAATTTGGTGCAATAACTTGCAAATTGAGTGTTCTAGGACAACAACTTGGCAGGAAGTATGCACAGGCTAGACACTTGCTAGCTAGCTCGATCGGTCACTGGCCACTTCACATCTTCTTGCTCGCTCGCTCGATCGATTGCTTACAAGGTTTCATGGCCACTAACAATCCGGTCAGTCTCAAAGCAGAGGAGCAGAAATGCTATGGCGGCGGCGGCGGCCGGGTCATTCAGGCAATCACGATGCTCGTGGCGACGGCGGTCACGGCGCAGGCGGCGTACCGGGCTCGCCGGGAGCCATGGGACCTCGCCTTCGTGCTCTTCGCCTACGCCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGACGACGGTGCGGCCGTGAGGCGGCGGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGAGCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAGGGCCGCCGTCTGGGGCATGACGTCGACGGTGGCGGTCGCCGGTTTCTACCTACTGTTCGTCTACAGGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACAAGCAGTCGTCGCCCAAGCTCGACCAGATGGTATAA
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| Protein seq | MVQQLDKWVQFGAITCKLSVLGQQLGRKYAQARHLLASSIGHWPLHIFLLARSIDCLQGFMATNNPVSLKAEEQKCYGGGGGRVIQAITMLVATAVTAQAAYRARREPWDLAFVLFAYADLGLLFLCLSMYERLPPPLEEIQKGDSGDDGAAVRRRLKMAVWALSTALSVAFAWRVAAVMPAPAMRAAVWGMTSTVAVAGFYLLFVYRPVTISSYSEMDTCKHKQSSPKLDQMV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g08900 | LOC_Os05g08900.1 | Chr05 | 4925212 | 4928175 | + | MSU_osa1r7 | ||
| CDS seq | ATGGTGCAACAACTTGACAAGTGGGTGCAATTTGGTGCAATAACTTGCAAATTGAGTGTTCTAGGACAACAACTTGGCAGGAAGTATGCACAGGCTAGACACTTGCTAGCTAGCTCGATCGGTCACTGGCCACTTCACATCTTCTTGCTCGCTCGCTCGATCGATTGCTTACAAGGTTTCATGGCCACTAACAATCCGGTCAGTCTCAAAGCAGAGGAGCAGAAATGCTATGGCGGCGGCGGCGGCCGGGTCATTCAGGCAATCACGATGCTCGTGGCGACGGCGGTCACGGCGCAGGCGGCGTACCGGGCTCGCCGGGAGCCATGGGACCTCGCCTTCGTGCTCTTCGCCTACGCCGACCTGGGCCTCCTCTTCCTGTGCCTCTCGATGTACGAGCGCCTGCCGCCTCCGCTGGAAGAAATACAGAAGGGGGACAGCGGCGACGACGGTGCGGCCGTGAGGCGGCGGCTCAAGATGGCCGTGTGGGCGCTGTCGACGGCGCTGAGCGTCGCCTTCGCGTGGCGCGTGGCGGCGGTCATGCCGGCGCCGGCGATGAGGGCCGCCGTCTGGGGCATGACGTCGACGGTGGCGGTCGCCGGTTTCTACCTACTGTTCGTCTACAGGCCTGTGACCATTTCCTCCTACTCCGAAATGGATACCTGCAAACACAAGCAGTCGTCGCCCAAGCTCGACCAGATGGTATAA
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| Protein seq | MVQQLDKWVQFGAITCKLSVLGQQLGRKYAQARHLLASSIGHWPLHIFLLARSIDCLQGFMATNNPVSLKAEEQKCYGGGGGRVIQAITMLVATAVTAQAAYRARREPWDLAFVLFAYADLGLLFLCLSMYERLPPPLEEIQKGDSGDDGAAVRRRLKMAVWALSTALSVAFAWRVAAVMPAPAMRAAVWGMTSTVAVAGFYLLFVYRPVTISSYSEMDTCKHKQSSPKLDQMV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.108295 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0181700 | RBH | 0.0 | 0.356660 | 0.607964 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g08840 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0181700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0005590 | RBH | 0.0 | 4.634229 | 1.124013 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0005570 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0005470 | RBH | 2.423771 | 6.512516 | 5.380279 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0005550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0005650 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0074100 | SBH | 2.8550495 | 110.222191 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005430 | RBH | 0.0 | 0.835625 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0075400 | SBH | 7.4883525 | 27.795311 | 5.814312 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0005560 | SBH | 0.147626 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0005490 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0005570 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0005610 | RBH | 0.0 | 0.448696 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0005610 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G005440 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0005670 | RBH | 0.0 | 0.0 | 0.0 |
