Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g07270 | OGI:05010300 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:3843774-3845480 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGCTAAAATAGGGGACATTCTCGTTGGTGATGGAGCTATAGTCCGTGGAGCTCGACGCGGCGGCGTACACCGCCGTCGTCGACGACGACGACGCCGATGCCGGCAGCGTCGCCGTCGTCACTACCCCCATGGTGCCAGCAACGGGCAGCTGGCGTGCGGCGGCGGCGGCGGCGAGGAGGTGCGAGGCGTGGGAGGAAGGGAGCACGGCGGCGGCGGAGGGGAGGCGGTACTTGTGCCTGACGATGTCGGCGCGGACGGCGGCGAGCTCGGCCTCGAGGGCCTGGACCTGCTGCTGCAAGGTGAGGATGGCGCCCATGCAGCCGTACACCGGGTCGCGCAGCCGCAGGTTGGCCTCGTACACCAGGCTGTTCGCCGCGTCGCCGCGCTGGCTCTCGTGCACCTCCTGCAACGACGACGACGACGATGGCTAGCCATCAGATCGATGCATGAATATATGCGGCTAATTAAAGAGGATATATATTGAATCATATGCAAGAGGAGGGCCAACTAGTTAATTAATGTGTTTCACCATCACATTATAGATTTCATAAGAGATGTACTAGGATTGTGGGAGTACTTCTCAATTTCGTTTTTTTTTAAAAAAAATGCACTTTTGAACATTAACTGTTGTCTTGAGCATAAACATGCAAAATGTGTATAACCAAGAATATATGATCTTCCTAGTAATGGTGCTCAAAAGAGATATATATATCGAGCACAAATTAGGGGAAACACCTTTAAACTCTCAAGAAATATCCCTCCTTTCCTCAGACACCATCCAAACATCCAAACAGTTATGAAAAAAGTCTCAATTTTTTTTACAATATTCATACAACATACATATACCACTTCATAAAATCCTAAGGCTTAATTCAACTCACACATTTTCGAAATAAAAAAAGACAAATCCAACATACCCAAATTTATCATTTTTTATTTCTCAAAGTATAGATCGAGTTTCAATTTGATTTTTGTTGGGGTGATAGATATTTCATATTAATATACTCTACATTGTAGAAAAGCAGATTTTTTTTCACAACCATTTACATTAAATCTAAAGAAAGATCCCCGCAAAATTAAATCTAAAAGAAAGATGTACAGAGGGGACATCTCTGGATTAGAATCCATTCCGTGGAATTAGGTATAAAATGTGAAAAGTTCTAGTTCGTGGTTTTGGATTCAAAGAGTTGAAATTAAAACTGCAATCCTCAACAAATAATTTAGCTGACTCACTACTATATAAATTCTTGTTTCAGTGTATAAAATTCCCTGAGAAATTAACCGAGACACATTCAATCTCATCAATTAATGAAGGCACCAAATCATTTCATAAGCTAGATGAGCTGCAAATTAGTAATAACATCACTTATCATTAGTAGTTAAGTTGAGTTCAACCAATTAATTAATATAAGCCTCTTGCTAGCTAGGTCACCATGGATGGATGCATATGCTTAATTAAGCTTAACCCAGCTCGATCACTACTCACCAGGAGCATCTTGGAGACGTTGCTGGCGCCGAAGACCTTGTGCACGGAGGCGAACTTGTGCGGCTCCAGCGGCGAGAAGTACGGCGAGAAGGGGCACTCCTGCGCGCACCGCCGCCGGAGCAGCTTGCACGCCGCGCACGGCGTTATCGTGTTCACCGCCGCCGCCGCCGACCCCGGCCCGGCGCCCGCCGCCGGCATGCTGCAGCTCCTCCTCGCCAT
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| CDS seq | ATGGCGAGGAGGAGCTGCAGCATGCCGGCGGCGGGCGCCGGGCCGGGGTCGGCGGCGGCGGCGGTGAACACGATAACGCCGTGCGCGGCGTGCAAGCTGCTCCGGCGGCGGTGCGCGCAGGAGTGCCCCTTCTCGCCGTACTTCTCGCCGCTGGAGCCGCACAAGTTCGCCTCCGTGCACAAGGTCTTCGGCGCCAGCAACGTCTCCAAGATGCTCCTGGAGGTGCACGAGAGCCAGCGCGGCGACGCGGCGAACAGCCTGGTGTACGAGGCCAACCTGCGGCTGCGCGACCCGGTGTACGGCTGCATGGGCGCCATCCTCACCTTGCAGCAGCAGGTCCAGGCCCTCGAGGCCGAGCTCGCCGCCGTCCGCGCCGACATCGTCAGGCACAAGTACCGCCTCCCCTCCGCCGCCGCCGTGCTCCCTTCCTCCCACGCCTCGCACCTCCTCGCCGCCGCCGCCGCCGCACGCCAGCTGCCCGTTGCTGGCACCATGGGGGTAGTGACGACGGCGACGCTGCCGGCATCGGCGTCGTCGTCGTCGACGACGGCGGTGTACGCCGCCGCGTCGAGCTCCACGGACTATAGCTCCATCACCAACGAGAATGTCCCCTATTTTAGCTGA
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| Protein seq | MARRSCSMPAAGAGPGSAAAAVNTITPCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAELAAVRADIVRHKYRLPSAAAVLPSSHASHLLAAAAAARQLPVAGTMGVVTTATLPASASSSSTTAVYAAASSSTDYSSITNENVPYFS |
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| Function | LOB domain-containing protein 13 [UniProtKB/Swiss-Prot:Q9AT61] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g07270 | LOC_Os05g07270.1 | Chr05 | 3843774 | 3845480 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGAGGAGGAGCTGCAGCATGCCGGCGGCGGGCGCCGGGCCGGGGTCGGCGGCGGCGGCGGTGAACACGATAACGCCGTGCGCGGCGTGCAAGCTGCTCCGGCGGCGGTGCGCGCAGGAGTGCCCCTTCTCGCCGTACTTCTCGCCGCTGGAGCCGCACAAGTTCGCCTCCGTGCACAAGGTCTTCGGCGCCAGCAACGTCTCCAAGATGCTCCTGGAGGTGCACGAGAGCCAGCGCGGCGACGCGGCGAACAGCCTGGTGTACGAGGCCAACCTGCGGCTGCGCGACCCGGTGTACGGCTGCATGGGCGCCATCCTCACCTTGCAGCAGCAGGTCCAGGCCCTCGAGGCCGAGCTCGCCGCCGTCCGCGCCGACATCGTCAGGCACAAGTACCGCCTCCCCTCCGCCGCCGCCGTGCTCCCTTCCTCCCACGCCTCGCACCTCCTCGCCGCCGCCGCCGCCGCACGCCAGCTGCCCGTTGCTGGCACCATGGGGGTAGTGACGACGGCGACGCTGCCGGCATCGGCGTCGTCGTCGTCGACGACGGCGGTGTACGCCGCCGCGTCGAGCTCCACGGACTATAGCTCCATCACCAACGAGAATGTCCCCTATTTTAGCTGA
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| Protein seq | MARRSCSMPAAGAGPGSAAAAVNTITPCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAELAAVRADIVRHKYRLPSAAAVLPSSHASHLLAAAAAARQLPVAGTMGVVTTATLPASASSSSTTAVYAAASSSTDYSSITNENVPYFS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0165450 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0165450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004640 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004690 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0004570 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0004660 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0004740 | RBH | 0.0 | 3.104825 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0055100 | RBH | 0.0455485 | 0.234648 | 0.084842 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0004510 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0055800 | RBH | 0.0264935 | 0.065667 | 0.059743 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0004650 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004690 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0004730 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004620 | RBH | 0.0 | 0.931481 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0004840 | RBH | 0.0 | 0.0 | 0.0 |
