Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g07080 | OGI:05010010 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:3726497-3729430 | ||||||||
| Gene Symbol | RLCK179, OsRLCK179, SDRLP-3 | ||||||||||
| DNA seq | TCACCCCGGCGTCAAATGTCTTTCTGTCTTGCTTGCGCACTGATTTTCGGACTGAACACCACCAAGAGGAAAGATCTTCTGATGGCACCGAGCAGGAAAGGCTAAGCCGATCTCGAATCCTTGTCCAAACCTGCTTTGTGAAGGGACAATCATGGAAGATGTGGGAGCAGGACTCGCCGTCGTTTGCACAAAGGTGACAGATCGAGGCCGAAATGGTTCTGATTTTGCTTCAGTAGAATTCTGGTTACTAACCGTAAAGTTTTCTATGCTCCCTAAATTTACACACAAGTTTATTTGATTCACTGCTTAGGAAGTTTCAATATATTAGATAGGTAAAATATTACACAAGTTTATTTGATTCACTGCTTAGGAAGTTTCAATATATTAGATAGGTAAAATATCACAAGGTACTATTAAGGCCCATAATTTTATTCTCATAGGGTTAACTATTACTACATGAGAGCTCACCTATCATTTAGTAACCAGCTAATGCCTCTAGAATGGTGTATAGGGTATTTAAATCTTCAATATGAGCTCCCTGTGGCTGTGATAGCTTGAAGTAATCTTGGCATTGGTGGCATTTCAAGTTCTAACAAACCTTCAAGAATTTGAACCACTTCGCCCATGGTCGGCCGATTAGACTCATTTTCTTGGACACACCAGCAGGCCACCTTGCTTATTCGTTCAGCCTCATCCAGGTTAACATCATCAAGCAGTTTGTTATCTAGCAAGCTCCTGACATCTCCCTCGAGAAGTTCATTTGCAACTTGCACAGGGAAATATGCAGCATGATCATCATCACTTGTGTCTTGTTTGCATGAGTTCCTCCTACCTGACATTATTTCAAACAACACCATTCCATAGCTATAGACATCAACCTTGGATGTAATGGCCACTCCACTAATTCATTCTGGTGCAAGATACCCTATGGTTCCTCTAAATGTAGTAAGAACTCTACTGAAATCTCTTCCAACAAATTTTGCCATTCCAAAATCTGCAATTTTAGGCACAAATGATCCATCAAGAAGTATGTTCTCTGGCTTAATATCACAGTGTATGATGCAATCCCTGCAACTCTCATGCAGGTATGCCAACCCTCTAGCAGCTCCAAGGGCTATCTGGTAACGGGTACTCCAGTTTAGGATCGTAGTATGGTTCTGAAAAAGGTGCGTGTCAAGAGAGCAATTTGGCATGTGTTCATATACAAGCAGCCTCCTACCACTATCAGAACAGAATCCAATAAGCTTAACCAAATTGATGTGTTGGATTATTCCAATGGAACTCACCTCAGCCCTGAATTGCTTCTCACCTTGACGGTCACCACCAAGCTTTTTTACTGCAATAGGTGTCGAGCCACCTAGAAACCCTTTGAATACAGCACCAAAGCCGCCTTCTCCTAATTTCTCAGAGAAATTTTTAGTTGCATGTTGCAGAACACTGTATTTGAAAGACACAATTCCATTTCCCCCTTGAACATTATTAGTAGGAGCAGTAAATTGCTTCCTTTTGTACCTCCAGATTACAGTAGCTGAAAACAAACCCAAAGCAACAACACTGGAAGCAACCGCAGCACCAATAATCTTTCCTTTTCCATTTTTATTATGGCTCCAACTTGCGTCTTTGGCGGCAATACGTAGGTAGAGAATTTCTCCATCACTAGTAGTACCTTTATTATACTCTTACATTAAGCAAATCATCATACCATACAGAGCACCTGTTACCATAGGAATATGCAGTGCAAGAACAATTATTCTGGCAAGCTAGTGCACATTGGTCAGCTGTCCTAGCAGCTTCTATGATGTTGGCTTCTGTGGGCAATCCAATACCGGGCAAGGAGTAAAACTTGTCAGTTGTAGCAGTTCTGCTTTGGTTCTTGGTGCCGCAATCTAATGGTGTATTTCTTATGCATCCACCAGCTCTATCCTCTAACTCCCAATCCTTAGGTGATCTTACTGAGAATCCCTTAATGCAATCGCACACTTGGAGTGCATTGCTGTTGCAGACAGTGAAAGGTCCACATGTAGCATAGATATCACATAGATCTTTAGGCAGAGTATAGATCGTTGCCCATTCCTGCTTGTTCTCAAGCCAGAGGAGCTGTTTCATCTGACCAGATATGTCCAAAAAGCAAACAGTTATTAGATCTTTTTCTAACAAGTTGAACACAAAGTACTTCTCTTGGTTGTTGTTGATGAACTTGAAGTCAAATAGAGTTCGTCCTGACATCTCTGGTATTGAGTTGAAGAATTGGCCATTCCATTCCCCAGTAGACCAATAGACTATGGAAGAGTTGCAAAACTCTAAGACGTATTGGTTAGCACCAGTAGGGTCTAATTCCAGGCAATAGAGGCCAGCAGCTGGATCAGCCAAACTCTTCTTGGAAACAATAACACGGTTCAGACCAGTCACCTTATCTAGGCCAAACTTTGCACCAATAAGCATGACATCAGTAGGGTAGTCAAAGCTCTGCCATAGTACGTTGGACGAGTTGGATGCATCTCTTAAGATGAGGTTTCCATTATCCTGGAGGACAACCATGGTTTTCTTGGCTGTGATACTGGCATGAGTCGACCAAACCGTCGATCTGGTGGCTTGGTTGAAGATGGCAAGGTTGCCATCACTGGCAATTGTGAGTTTTGTCACTCTGTGATGGCCTACAATTGGGTTCTCTCTGTTTGCTATCCATATTGGAGTTAACACTGGTATCTTGTCGAACCATATGCCTAGGTACCAGTGCTTGAGGGTGTGCCGGGGGAAGAACTTACTGTCGGTGTCCGGATGGAAGAAGCCGAGCGCGAACCTGCCATTGCGAGAGACAAGCTTCTCATCTTTCGGGAGTGCTTCACCGGCTGAAATCGTGTCCGTTGCAGCAGAACACGCCGGAGAATGTATGGAGAAGAGCAGAGGCACAAGAATGATGAAGGTACGAAGCAT
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| CDS seq | ATGCTTCGTACCTTCATCATTCTTGTGCCTCTGCTCTTCTCCATACATTCTCCGGCGTGTTCTGCTGCAACGGACACGATTTCAGCCGGTGAAGCACTCCCGAAAGATGAGAAGCTTGTCTCTCGCAATGGCAGGTTCGCGCTCGGCTTCTTCCATCCGGACACCGACAGTAAGTTCTTCCCCCGGCACACCCTCAAGCACTGGTACCTAGGCATATGGTTCGACAAGATACCAGTGTTAACTCCAATATGGATAGCAAACAGAGAGAACCCAATTGTAGGCCATCACAGAGTGACAAAACTCACAATTGCCAGTGATGGCAACCTTGCCATCTTCAACCAAGCCACCAGATCGACGGTTTGGTCGACTCATGCCAGTATCACAGCCAAGAAAACCATGGTTGTCCTCCAGGATAATGGAAACCTCATCTTAAGAGATGCATCCAACTCGTCCAACGTACTATGGCAGAGCTTTGACTACCCTACTGATGTCATGCTTATTGGTGCAAAGTTTGGCCTAGATAAGGTGACTGGTCTGAACCGTGTTATTGTTTCCAAGAAGAGTTTGGCTGATCCAGCTGCTGGCCTCTATTGCCTGGAATTAGACCCTACTGGTGCTAACCAATACGTCTTAGAGTTTTGCAACTCTTCCATAGTCTATTGGTCTACTGGGGAATGGAATGGCCAATTCTTCAACTCAATACCAGAGATGTCAGGACGAACTCTATTTGACTTCAAGTTCATCAACAACAACCAAGAGAAGTACTTTGTGTTCAACTTGTTAGAAAAAGATCTAATAACTGTTTGCTTTTTGGACATATCTGGTCAGATGAAACAGCTCCTCTGGCTTGAGAACAAGCAGGAATGGGCAACGATCTATACTCTGCCTAAAGATCTATGTGATATCTATGCTACATGTGGACCTTTCACTGTCTGCAACAGCAATGCACTCCAAGTGTGCGATTGCATTAAGGGATTCTCAGTAAGATCACCTAAGGATTGGGAGTTAGAGGATAGAGCTGGTGGATGCATAAGAAATACACCATTAGATTGCGGCACCAAGAACCAAAGCAGAACTGCTACAACTGACAAGTTTTACTCCTTGCCCGGTATTGGATTGCCCACAGAAGCCAACATCATAGAAGCTGCTAGGACAGCTGACCAATGTGCACTAGCTTGCCAGAATAATTGTTCTTGCACTGCATATTCCTATGCTACTGTAATCTGGAGGTACAAAAGGAAGCAATTTACTGCTCCTACTAATAATGTTCAAGGGGGAAATGGAATTGTGTCTTTCAAATACAGTGTTCTGCAACATGCAACTAAAAATTTCTCTGAGAAATTAGGAGAAGGCGGCTTTGGTGCTGTATTCAAAGGGTTTCTAGGTGGCTCGACACCTATTGCAGTAAAAAAGCTTGGTGGTGACCGTCAAGGTGAGAAGCAATTCAGGGCTGAGAACCATACTACGATCCTAAACTGGAGTACCCGTTACCAGATAGCCCTTGGAGCTGCTAGAGGGTTGGCATACCTGCATGAGAGTTGCAGGGATTGCATCATACACTGTGATATTAAGCCAGAGAACATACTTCTTGATGGATCATTTGTGCCTAAAATTGCAGATTTTGGAATGGCAAAATTTGTTGGAAGAGATTTCAGTAGGAGGAACTCATGCAAACAAGACACAAGTGATGATGATCATGCTGCATATTTCCCTGTGCAAGTTGCAAATGAACTTCTCGAGGGAGATGTCAGGAGCTTGCTAGATAACAAACTGCTTGATGATGTTAACCTGGATGAGGCTGAACGAATAAGCAAGGTGGCCTGCTGGTGTGTCCAAGAAAATGAGTCTAATCGGCCGACCATGGGCGAAGTGGTTCAAATTCTTGAAGGGAGCATAGAAAACTTTACGGTTAGTAACCAGAATTCTACTGAAGCAAAATCAGAACCATTTCGGCCTCGATCTGTCACCTTTGTGCAAACGACGGCGAGTCCTGCTCCCACATCTTCCATGATTGTCCCTTCACAAAGCAGGTTTGGACAAGGATTCGAGATCGGCTTAGCCTTTCCTGCTCGGTGCCATCAGAAGATCTTTCCTCTTGGTGGTGTTCAGTCCGAAAATCAGTGCGCAAGCAAGACAGAAAGACATTTGACGCCGGGGTGA
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| Protein seq | MLRTFIILVPLLFSIHSPACSAATDTISAGEALPKDEKLVSRNGRFALGFFHPDTDSKFFPRHTLKHWYLGIWFDKIPVLTPIWIANRENPIVGHHRVTKLTIASDGNLAIFNQATRSTVWSTHASITAKKTMVVLQDNGNLILRDASNSSNVLWQSFDYPTDVMLIGAKFGLDKVTGLNRVIVSKKSLADPAAGLYCLELDPTGANQYVLEFCNSSIVYWSTGEWNGQFFNSIPEMSGRTLFDFKFINNNQEKYFVFNLLEKDLITVCFLDISGQMKQLLWLENKQEWATIYTLPKDLCDIYATCGPFTVCNSNALQVCDCIKGFSVRSPKDWELEDRAGGCIRNTPLDCGTKNQSRTATTDKFYSLPGIGLPTEANIIEAARTADQCALACQNNCSCTAYSYATVIWRYKRKQFTAPTNNVQGGNGIVSFKYSVLQHATKNFSEKLGEGGFGAVFKGFLGGSTPIAVKKLGGDRQGEKQFRAENHTTILNWSTRYQIALGAARGLAYLHESCRDCIIHCDIKPENILLDGSFVPKIADFGMAKFVGRDFSRRNSCKQDTSDDDHAAYFPVQVANELLEGDVRSLLDNKLLDDVNLDEAERISKVACWCVQENESNRPTMGEVVQILEGSIENFTVSNQNSTEAKSEPFRPRSVTFVQTTASPAPTSSMIVPSQSRFGQGFEIGLAFPARCHQKIFPLGGVQSENQCASKTERHLTPG |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [UniProtKB/Swiss-Prot:Q39203] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g07080 | LOC_Os05g07080.1 | Chr05 | 3726497 | 3729430 | - | MSU_osa1r7 | ||
| CDS seq | ATGCTTCGTACCTTCATCATTCTTGTGCCTCTGCTCTTCTCCATACATTCTCCGGCGTGTTCTGCTGCAACGGACACGATTTCAGCCGGTGAAGCACTCCCGAAAGATGAGAAGCTTGTCTCTCGCAATGGCAGGTTCGCGCTCGGCTTCTTCCATCCGGACACCGACAGTAAGTTCTTCCCCCGGCACACCCTCAAGCACTGGTACCTAGGCATATGGTTCGACAAGATACCAGTGTTAACTCCAATATGGATAGCAAACAGAGAGAACCCAATTGTAGGCCATCACAGAGTGACAAAACTCACAATTGCCAGTGATGGCAACCTTGCCATCTTCAACCAAGCCACCAGATCGACGGTTTGGTCGACTCATGCCAGTATCACAGCCAAGAAAACCATGGTTGTCCTCCAGGATAATGGAAACCTCATCTTAAGAGATGCATCCAACTCGTCCAACGTACTATGGCAGAGCTTTGACTACCCTACTGATGTCATGCTTATTGGTGCAAAGTTTGGCCTAGATAAGGTGACTGGTCTGAACCGTGTTATTGTTTCCAAGAAGAGTTTGGCTGATCCAGCTGCTGGCCTCTATTGCCTGGAATTAGACCCTACTGGTGCTAACCAATACGTCTTAGAGTTTTGCAACTCTTCCATAGTCTATTGGTCTACTGGGGAATGGAATGGCCAATTCTTCAACTCAATACCAGAGATGTCAGGACGAACTCTATTTGACTTCAAGTTCATCAACAACAACCAAGAGAAGTACTTTGTGTTCAACTTGTTAGAAAAAGATCTAATAACTGTTTGCTTTTTGGACATATCTGGTCAGATGAAACAGCTCCTCTGGCTTGAGAACAAGCAGGAATGGGCAACGATCTATACTCTGCCTAAAGATCTATGTGATATCTATGCTACATGTGGACCTTTCACTGTCTGCAACAGCAATGCACTCCAAGTGTGCGATTGCATTAAGGGATTCTCAGTAAGATCACCTAAGGATTGGGAGTTAGAGGATAGAGCTGGTGGATGCATAAGAAATACACCATTAGATTGCGGCACCAAGAACCAAAGCAGAACTGCTACAACTGACAAGTTTTACTCCTTGCCCGGTATTGGATTGCCCACAGAAGCCAACATCATAGAAGCTGCTAGGACAGCTGACCAATGTGCACTAGCTTGCCAGAATAATTGTTCTTGCACTGCATATTCCTATGCTACTGTAATCTGGAGGTACAAAAGGAAGCAATTTACTGCTCCTACTAATAATGTTCAAGGGGGAAATGGAATTGTGTCTTTCAAATACAGTGTTCTGCAACATGCAACTAAAAATTTCTCTGAGAAATTAGGAGAAGGCGGCTTTGGTGCTGTATTCAAAGGGTTTCTAGGTGGCTCGACACCTATTGCAGTAAAAAAGCTTGGTGGTGACCGTCAAGGTGAGAAGCAATTCAGGGCTGAGAACCATACTACGATCCTAAACTGGAGTACCCGTTACCAGATAGCCCTTGGAGCTGCTAGAGGGTTGGCATACCTGCATGAGAGTTGCAGGGATTGCATCATACACTGTGATATTAAGCCAGAGAACATACTTCTTGATGGATCATTTGTGCCTAAAATTGCAGATTTTGGAATGGCAAAATTTGTTGGAAGAGATTTCAGTAGGAGGAACTCATGCAAACAAGACACAAGTGATGATGATCATGCTGCATATTTCCCTGTGCAAGTTGCAAATGAACTTCTCGAGGGAGATGTCAGGAGCTTGCTAGATAACAAACTGCTTGATGATGTTAACCTGGATGAGGCTGAACGAATAAGCAAGGTGGCCTGCTGGTGTGTCCAAGAAAATGAGTCTAATCGGCCGACCATGGGCGAAGTGGTTCAAATTCTTGAAGGGAGCATAGAAAACTTTACGGTTAGTAACCAGAATTCTACTGAAGCAAAATCAGAACCATTTCGGCCTCGATCTGTCACCTTTGTGCAAACGACGGCGAGTCCTGCTCCCACATCTTCCATGATTGTCCCTTCACAAAGCAGGTTTGGACAAGGATTCGAGATCGGCTTAGCCTTTCCTGCTCGGTGCCATCAGAAGATCTTTCCTCTTGGTGGTGTTCAGTCCGAAAATCAGTGCGCAAGCAAGACAGAAAGACATTTGACGCCGGGGTGA
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| Protein seq | MLRTFIILVPLLFSIHSPACSAATDTISAGEALPKDEKLVSRNGRFALGFFHPDTDSKFFPRHTLKHWYLGIWFDKIPVLTPIWIANRENPIVGHHRVTKLTIASDGNLAIFNQATRSTVWSTHASITAKKTMVVLQDNGNLILRDASNSSNVLWQSFDYPTDVMLIGAKFGLDKVTGLNRVIVSKKSLADPAAGLYCLELDPTGANQYVLEFCNSSIVYWSTGEWNGQFFNSIPEMSGRTLFDFKFINNNQEKYFVFNLLEKDLITVCFLDISGQMKQLLWLENKQEWATIYTLPKDLCDIYATCGPFTVCNSNALQVCDCIKGFSVRSPKDWELEDRAGGCIRNTPLDCGTKNQSRTATTDKFYSLPGIGLPTEANIIEAARTADQCALACQNNCSCTAYSYATVIWRYKRKQFTAPTNNVQGGNGIVSFKYSVLQHATKNFSEKLGEGGFGAVFKGFLGGSTPIAVKKLGGDRQGEKQFRAENHTTILNWSTRYQIALGAARGLAYLHESCRDCIIHCDIKPENILLDGSFVPKIADFGMAKFVGRDFSRRNSCKQDTSDDDHAAYFPVQVANELLEGDVRSLLDNKLLDDVNLDEAERISKVACWCVQENESNRPTMGEVVQILEGSIENFTVSNQNSTEAKSEPFRPRSVTFVQTTASPAPTSSMIVPSQSRFGQGFEIGLAFPARCHQKIFPLGGVQSENQCASKTERHLTPG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.368031 | 0.203011 | 0.218070 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0163500 | RBH | 0.441354 | 0.429525 | 0.256983 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06240 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0163500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0004520 | RBH | 0.068657 | 0.000000 | 0.395796 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0004570 | RBH | 0.000000 | 0.710366 | 0.115302 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0004460 | RBH | 0.000000 | 0.802252 | 0.458961 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0004550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0004630 | RBH | 1.661644 | 0.0 | 0.665642 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0056100 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0004400 | RBH | 0.000000 | 0.0 | 0.185126 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0053900 | RBH | 1.6490525 | 5.6291975 | 4.477144 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0004540 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0004460 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0004550 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0004570 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0004620 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004500 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0004720 | RBH | 0.0 | 0.0 | 0.401471 |
