Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g05490 | OGI:05007820 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:2734259-2737002 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGAGATGCGTCCTCCGGGCTCCTCAACTACGCCCGCTTCAGCGGCCTCCTCGCCAGCTGCGGTCGCGAGGGAGACCTCCGCCTCGGCGCCGCCCTCCACGCCGCCGTCGTCAAGAACCCCGCCCACTTCCGCCTCTGCGCGAGCCGGCCCTGGCTCCGCCACGTCCTCGTCGCCTGGAACTCGCTCGTCTCCATGTACGCCAGGTGCGGCCGCCGCGAGGACGCCGCCAGGGTGTTCGACGAAATGCGCGTCCGCGACGCCGTCTCCTGGAACTCGCTCATCGCCGCCTCCCGCGGCGCCGGCGACGCGCTCGCGCTGTTCAGGCGGATGCTGCGGTCGGACGCGCGCGCCTGCGACCGCGCCACTTTCACGACGGTCCTGTCGGAGTGCGCGCGCGCGGGCGCGGCGTCGCTCCCAGCGTGCGCCATGGTGCACGGGCTGGTGGTTTCGTGCGGCTTCGAGGCGGAGGTGCCTGTCGGGAACGCGCTGGTGACGGCCTACTTCGAGTGCGGGTCTCCAGCCTCGGCAGAGAGGGTGTTCCATGGAATGGCAGAGAAGAACGTCATCACGTGGACAGCGATGATCTCTGGGATGGCCAGGGCAGAGCTGTACAAGGAGAGCTTCAGTCTTTTTGGGCAGATGATCCGCACGGTGGATGCCAACAACGCGACGTACTCGTGCGCCCTGCTAGCTTGCGCCAGATCTTTAGCAGCAAGGGAAGGTCAGCAGGTTCATGGGCTTGTTGTGAAGGCTGGATTCGAGGATGATCTCCATGTCGAAAGCGGCCTCATGGATGTCTATTCCAAATGCGGTTTGATGGAGGATGCTCTGACCGTCTTTCGCTCTTGTCGAGAACCCGATGAAGTTTTTCTGACAGTGATCCTGGTTGGATTTGCTCAGAATGGACTGGAAGAGAAAGCATTCGAATTGTTCGCCGAGATGGTGGGTGCAGGAAATGAGATTGATGAAAACACTGTTTCTGCAGTTCTGGGGGCATTCGGTGCTTCTGCGCCATTTGCTCTTGGGAAGCAAATCCATGCATTGGTCATCAAGAGGTGTTTTGGAGTGAATACCTATGTCTGCAATGGTTTGGTCAATATGTATTCAAAATGCGGTGAATTGAGAGAGTCTGTCCGGGTGTTTGATGAAATGCCCAGTAAGAACTCAGTTTCATGGAACTCCATCATTGCAGCCTTCGCCAGACATGGACATGGTTCAGAGGTCTATCAGCTGTTCGAATCCATGAAAGCTGACGGTGCCAAGCCCACCGATGTCACATTCTTGTCGCTGCTTCATGCTTGTAGTCATGTTGGGTCAGCTAAGAAGGGACTGGAGATCTTGAATTCTATGTCATCACAGTATGGAGTTCTTCCAAGGATGGAGCATTACGCATGTGTGGTTGATATGCTTGGCCGAGCCGGCTTGTTAGACGACGCAAAATCGTTTATAGAAGATGGACCTTTCACGGACAATGCTCTTCTTTGGCAGGCTTTAATGGGAGCTTGTAGCTTCCATGGCAACTCCGAAGTTGGGAAGTATGCAGCAGAGAAGTTGCTCCTCCTGGACCCTAGTTGTACGGCTGCTTATGTGTTGCTGTCAAACATCTACTCATCCGAGGGAAGATGGGATGATCGAGCCAAGGTGATGAAGAGGATGAGCGAAATGGGCTTGAGGAAGGACACTGGCAAGAGCTGGATCGAACTCGAGAAGGAGGTTCACTCTTTCGTTGTCAGATCAACATCTCATCCTAATTCAGCTGCTGCTGTTCGTTGATGATGTGCTGCATCATCTGTCCAGTGATCAAGACCTGATGGAGAACACCGCTTTGTGAGATTTCAGGTCTGTATCTTTCGTTCAGCTCTACAATAATATGAAGTCTTGGTATACACATCTGATTCTGATACATACAATATAGGTTGTGTTTAGATACAAAGTTTGGATCCAAACTTCAGTCCTTTTCCATCACATCAACCTGTCATACACACATAACTTTTCAGTCACATCATCTCTAATTTCAACTAAAATCCAAACTTTGCGCTGAACTAAGGCTGTGTTTAGATCCAAAATTTGGATCCAAACTTCAGTCCTTTTCCATCACATCAACCTGTCATACACACATAACTTTTCAATCACATCATCTCCAATTTAAACCAAAATCCAAACTTTGGATCCAACTAAACACACACTAAACACAGCCTAGTCTAGTACAAGTTTGTCAGGATTAGTTTTCAACTTTCTGGTAGAACATATCCATATTCTACATGAATATTTTATAATAGTAAATTCAACGTTGCTTCATTTTCATTGTGTTATAGAGTACCGAAAGAAGTATGCACCCTCAAAGTCAAAGCCATAGAGATTCGCCGTCTGAGATGTGAACGACTCAACTGTCATCTTCCTCCGGTGTCGCGCGCCGCCGCCGCACCATGGACGTCGTCAGCATCGTCGGGCTACAGGACGACGGCAGCGAGCCGGCAACCGGAGGGTAGCAAGAACAGCTTCCCGGCGGCCAGTTCACGCCGGCGAAGGTCGCAGGGTGAGGATGGCGTGACACGTACGCCAACTGGAAGATCATTTCTGCACCAACATCACTGAGTGACAGAGACCAGGAGGAGCCATATGTAATTGTGTGACAACAACGTTTCAATGTACAAGTATCCAGAGTGAAGAGCCTCATGAAACAATCCATATATTTTGCCACAAGTATAATTATCAGAGCAGTATGAATCTCCTTCTGAACA
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| CDS seq | ATGAGAGATGCGTCCTCCGGGCTCCTCAACTACGCCCGCTTCAGCGGCCTCCTCGCCAGCTGCGGTCGCGAGGGAGACCTCCGCCTCGGCGCCGCCCTCCACGCCGCCGTCGTCAAGAACCCCGCCCACTTCCGCCTCTGCGCGAGCCGGCCCTGGCTCCGCCACGTCCTCGTCGCCTGGAACTCGCTCGTCTCCATGTACGCCAGGTGCGGCCGCCGCGAGGACGCCGCCAGGGTGTTCGACGAAATGCGCGTCCGCGACGCCGTCTCCTGGAACTCGCTCATCGCCGCCTCCCGCGGCGCCGGCGACGCGCTCGCGCTGTTCAGGCGGATGCTGCGGTCGGACGCGCGCGCCTGCGACCGCGCCACTTTCACGACGGTCCTGTCGGAGTGCGCGCGCGCGGGCGCGGCGTCGCTCCCAGCGTGCGCCATGGTGCACGGGCTGGTGGTTTCGTGCGGCTTCGAGGCGGAGGTGCCTGTCGGGAACGCGCTGGTGACGGCCTACTTCGAGTGCGGGTCTCCAGCCTCGGCAGAGAGGGTGTTCCATGGAATGGCAGAGAAGAACGTCATCACGTGGACAGCGATGATCTCTGGGATGGCCAGGGCAGAGCTGTACAAGGAGAGCTTCAGTCTTTTTGGGCAGATGATCCGCACGGTGGATGCCAACAACGCGACGTACTCGTGCGCCCTGCTAGCTTGCGCCAGATCTTTAGCAGCAAGGGAAGGTCAGCAGGTTCATGGGCTTGTTGTGAAGGCTGGATTCGAGGATGATCTCCATGTCGAAAGCGGCCTCATGGATGTCTATTCCAAATGCGGTTTGATGGAGGATGCTCTGACCGTCTTTCGCTCTTGTCGAGAACCCGATGAAGTTTTTCTGACAGTGATCCTGGTTGGATTTGCTCAGAATGGACTGGAAGAGAAAGCATTCGAATTGTTCGCCGAGATGGTGGGTGCAGGAAATGAGATTGATGAAAACACTGTTTCTGCAGTTCTGGGGGCATTCGGTGCTTCTGCGCCATTTGCTCTTGGGAAGCAAATCCATGCATTGGTCATCAAGAGGTGTTTTGGAGTGAATACCTATGTCTGCAATGGTTTGGTCAATATGTATTCAAAATGCGGTGAATTGAGAGAGTCTGTCCGGGTGTTTGATGAAATGCCCAGTAAGAACTCAGTTTCATGGAACTCCATCATTGCAGCCTTCGCCAGACATGGACATGGTTCAGAGGTCTATCAGCTGTTCGAATCCATGAAAGCTGACGGTGCCAAGCCCACCGATGTCACATTCTTGTCGCTGCTTCATGCTTGTAGTCATGTTGGGTCAGCTAAGAAGGGACTGGAGATCTTGAATTCTATGTCATCACAGTATGGAGTTCTTCCAAGGATGGAGCATTACGCATGTGTGGTTGATATGCTTGGCCGAGCCGGCTTGTTAGACGACGCAAAATCGTTTATAGAAGATGGACCTTTCACGGACAATGCTCTTCTTTGGCAGGCTTTAATGGGAGCTTGTAGCTTCCATGGCAACTCCGAAGTTGGGAAGTATGCAGCAGAGAAGTTGCTCCTCCTGGACCCTAGTTGTACGGCTGCTTATGTGTTGCTGTCAAACATCTACTCATCCGAGGGAAGATGGGATGATCGAGCCAAGGTGATGAAGAGGATGAGCGAAATGGGCTTGAGGAAGGACACTGGCAAGAGCTGGATCGAACTCGAGAAGGAGGTTCACTCTTTCGTTGTCAGATCAACATCTCATCCTAATTCAGCTGCTGCTGTTCGTTGA
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| Protein seq | MRDASSGLLNYARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYARCGRREDAARVFDEMRVRDAVSWNSLIAASRGAGDALALFRRMLRSDARACDRATFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIRTVDANNATYSCALLACARSLAAREGQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDDAKSFIEDGPFTDNALLWQALMGACSFHGNSEVGKYAAEKLLLLDPSCTAAYVLLSNIYSSEGRWDDRAKVMKRMSEMGLRKDTGKSWIELEKEVHSFVVRSTSHPNSAAAVR |
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| Function | Pentatricopeptide repeat-containing protein At3g05340 [UniProtKB/Swiss-Prot:Q9MA85] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g05490 | LOC_Os05g05490.1 | Chr05 | 2734259 | 2737002 | + | MSU_osa1r7 | ||
| CDS seq | ATGAGAGATGCGTCCTCCGGGCTCCTCAACTACGCCCGCTTCAGCGGCCTCCTCGCCAGCTGCGGTCGCGAGGGAGACCTCCGCCTCGGCGCCGCCCTCCACGCCGCCGTCGTCAAGAACCCCGCCCACTTCCGCCTCTGCGCGAGCCGGCCCTGGCTCCGCCACGTCCTCGTCGCCTGGAACTCGCTCGTCTCCATGTACGCCAGGTGCGGCCGCCGCGAGGACGCCGCCAGGGTGTTCGACGAAATGCGCGTCCGCGACGCCGTCTCCTGGAACTCGCTCATCGCCGCCTCCCGCGGCGCCGGCGACGCGCTCGCGCTGTTCAGGCGGATGCTGCGGTCGGACGCGCGCGCCTGCGACCGCGCCACTTTCACGACGGTCCTGTCGGAGTGCGCGCGCGCGGGCGCGGCGTCGCTCCCAGCGTGCGCCATGGTGCACGGGCTGGTGGTTTCGTGCGGCTTCGAGGCGGAGGTGCCTGTCGGGAACGCGCTGGTGACGGCCTACTTCGAGTGCGGGTCTCCAGCCTCGGCAGAGAGGGTGTTCCATGGAATGGCAGAGAAGAACGTCATCACGTGGACAGCGATGATCTCTGGGATGGCCAGGGCAGAGCTGTACAAGGAGAGCTTCAGTCTTTTTGGGCAGATGATCCGCACGGTGGATGCCAACAACGCGACGTACTCGTGCGCCCTGCTAGCTTGCGCCAGATCTTTAGCAGCAAGGGAAGGTCAGCAGGTTCATGGGCTTGTTGTGAAGGCTGGATTCGAGGATGATCTCCATGTCGAAAGCGGCCTCATGGATGTCTATTCCAAATGCGGTTTGATGGAGGATGCTCTGACCGTCTTTCGCTCTTGTCGAGAACCCGATGAAGTTTTTCTGACAGTGATCCTGGTTGGATTTGCTCAGAATGGACTGGAAGAGAAAGCATTCGAATTGTTCGCCGAGATGGTGGGTGCAGGAAATGAGATTGATGAAAACACTGTTTCTGCAGTTCTGGGGGCATTCGGTGCTTCTGCGCCATTTGCTCTTGGGAAGCAAATCCATGCATTGGTCATCAAGAGGTGTTTTGGAGTGAATACCTATGTCTGCAATGGTTTGGTCAATATGTATTCAAAATGCGGTGAATTGAGAGAGTCTGTCCGGGTGTTTGATGAAATGCCCAGTAAGAACTCAGTTTCATGGAACTCCATCATTGCAGCCTTCGCCAGACATGGACATGGTTCAGAGGTCTATCAGCTGTTCGAATCCATGAAAGCTGACGGTGCCAAGCCCACCGATGTCACATTCTTGTCGCTGCTTCATGCTTGTAGTCATGTTGGGTCAGCTAAGAAGGGACTGGAGATCTTGAATTCTATGTCATCACAGTATGGAGTTCTTCCAAGGATGGAGCATTACGCATGTGTGGTTGATATGCTTGGCCGAGCCGGCTTGTTAGACGACGCAAAATCGTTTATAGAAGATGGACCTTTCACGGACAATGCTCTTCTTTGGCAGGCTTTAATGGGAGCTTGTAGCTTCCATGGCAACTCCGAAGTTGGGAAGTATGCAGCAGAGAAGTTGCTCCTCCTGGACCCTAGTTGTACGGCTGCTTATGTGTTGCTGTCAAACATCTACTCATCCGAGGGAAGATGGGATGATCGAGCCAAGGTGATGAAGAGGATGAGCGAAATGGGCTTGAGGAAGGACACTGGCAAGAGCTGGATCGAACTCGAGAAGGAGGTTCACTCTTTCGTTGTCAGATCAACATCTCATCCTAATTCAGCTGCTGCTGTTCGTTGA
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| Protein seq | MRDASSGLLNYARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYARCGRREDAARVFDEMRVRDAVSWNSLIAASRGAGDALALFRRMLRSDARACDRATFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNALVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQMIRTVDANNATYSCALLACARSLAAREGQQVHGLVVKAGFEDDLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFALGKQIHALVIKRCFGVNTYVCNGLVNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDDAKSFIEDGPFTDNALLWQALMGACSFHGNSEVGKYAAEKLLLLDPSCTAAYVLLSNIYSSEGRWDDRAKVMKRMSEMGLRKDTGKSWIELEKEVHSFVVRSTSHPNSAAAVR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.067728 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0147600 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0147600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0003330 | RBH | 0.051315 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0003380 | RBH | 0.0 | 0.434799 | 0.479772 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0003330 | RBH | 0.674562 | 0.664018 | 0.182713 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0003410 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0003460 | RBH | 0.0 | 1.944310 | 0.115951 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0039800 | RBH | 0.544946 | 1.8122405 | 0.5102855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0003230 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0041100 | RBH | 0.500554 | 1.516225 | 2.361707 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0003360 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0003280 | RBH | 0.205066 | 1.701035 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0003390 | RBH | 0.0 | 3.037320 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0003410 | RBH | 0.207574 | 0.134418 | 0.129622 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0003460 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G003280 | RBH | 0.084187 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0003470 | RBH | 0.535188 | 0.0 | 0.0 |
