Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g05390 | OGI:05007700 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:2674520-2679534 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACATGCCTGTAGTTGCTTCCTGAAGTGCGTACATAGCAGAAATCTCCTCCCGAGTAGGGACAGAAACAGCGAATGAACCTAATCAGTAAAATAAACTATTTTAGTGGTTTATTGAGGCAAATATTATGTATCTGTAAACAGATGAAAGTATGCATTCAAGTACATTTGGGCCGATGTTCTTGTATCTTTGTAAACAGAAAAGAAGTATATATGCAAGTCTTAGGTGTATATCATTGTTATAAAATATACTAGCAATACAAATATCCTCTTTTCAATATTAAAATAGAAAAAAAATATTTGTGTATATTTATACAAAAAAAAATATTTGTGTATATTTATACCCCTCTTAACAACTTCTCCATTTTCTGAGACAACTGTCGTCAAATTTATGGTGTTTCGAGCTCCATTGCGTATGTGAAACAAACCAACCTACAAAATCAACTCATATTTGAGTAATTCAATAAAAAAACACAAAAAGACACAAAGAAAGCAATTCACAGTTAAAAACAATAAACATACTTTAATGTCCAATGTGGAATTGAGACCATTTCCTTTGTCAAAATGATCCTCAGAAAGTCTCAGCAACATTTCTTCTAACTAATACAATCAATAAAAAGGTTACAGAAGCCAACATAAAGTATCCAAATGCCATACAAAAAATTATTTTCACCTGAATTGTATCAGAAACCCATTCTCCATTTAAATGCTGAATGATATCGCCGACTCTGACTCCCAGTTTCTCAATAGTAGACCCTGATGACACCTATATTTAATTTCAGTTGATATAAGAATTACTACATGACAGGGGCATACATCTTAAGTAAATCAAAATCTACAATAGTAAACAATCTATATACTTCTTCGACAATGAGCCCATCGCAAATATGGATCTTGCGTAATATCATCTCTATATGAGGAAGGTCCAGAAATTTAATGGCTGAAAGCTTGACCCCAAGTTGAGGGCGGGGGATACACCTCTGCCAGATAATTGTTCATTAGAATTCAAAAGGAGGTACAAAGCAGAATAAAGCATGTAAAATAAAATATTTAGACTGAAATTTAAATAATATGTATAAAAAAGCAGTTTAACAGAGCTATACGATGTATTCTAAAATCATGTCCGCCCAAGACTATAATCCCTACATAATTTTATATATGATCTTTTAGTAAAATTTTGAAATGATTCCTTTAAACAATAAGCATTAAACTAATAAGAACTGTATTGCTAAGTTATCTTATGGTCATTGATTTGCAGCAAATAATATAAAATTATCAATAAGAGATACCTTCACAATAATACAAGTGAAATCACACATTATGTTTTCGCATGACATGATACTGTTACAGCATACATTAAAAAGTCTTCTAGGTCATCTATCTTAATCTAGGAAGGTCAACCCTATAATCCAACTTTGAATAACAACAAAAAAAGAACAAAAATATTTTCGCAATATTATAGAAAAATGAAAAGAAAACACACTGGATCTTCCGCCACAGATGTAAGCACTTGATAAGTATCGAGGAGGGAATAAAAGCATGTGTCTGACAAGCAATCCCCACCGTGCTCCCCTCAAAGTCAATGACTAGCCCTCCCAAGGCACACTACAATATTTACAGCAAAAATTAACTATATTAAAAGATATAAATCGTATACCATATAGTTCAAAATTAAAATGATTATAATAAAACGAAGATACCTTAGGGGTGGCAGTATCAACATACATGTAGTGATGCCGACCACACAAAAACGGATTGCAGTATTGTACTTTGCCATGACTTATACTTAGACACAAGTTCTCATCCCTTCCTAACACAAATATTTGTTGAGCATAATTCAGGTTGAAAGTAAAATTAGGTATCTGAACTGGGGATTCCACTATAATCTCGAACAAAGCAAGATTGTAGTGTGTCTGAGCATAAATCAAGCGCCCCTCCACCGTGGTGTCGTCCAGTAGGTGCACAAAGACCTAAAACATTTATTGCAAAATGTATAAAATTATTAAATCATCTAGGGAACACATGACAAAAGGACCGAAAACAAATGATCATGACCATTTTAGACAAAAGGCTAAATGTTGCGTATGCTTTCTGGAAGAGTCAAATTCAAATATATAGCATTTAAATTGATACTAGAGACTTTGCACCGTAAATAGTAGGGAAATATTTGAAGCATCAAGCGATTTTGAGATTGAGTTAAATATAATAAGGCTAAGAAGGAAATAAGTAACTACATCCATCCCAAAATATTGTCCAGATGCATAGCCAAAAGCTGCTATATTTTGGAATGGAGGTAGTATTTCCCTATTTGGGAGTGATAAAAATGTTACACAATGGCTGGACATTGTTCTTTGTGTTGTCAATCAATGCCCTGGTCCTCAAACCTAGTGATCAACATGCCACCTAGAAATCCTATTTATAGGCATTGTTTCGCACTCTACACTACTCAATCAGATCTAGGAACAAAACAAGAACTAGGAAAGACTGCTTCAATCAATAGTATCCTCTTTGCACAAAATTCAGTGTGTTCAGCATTTCGATGTCAATGTGAAGCACAAACGAATTACAATATTTCATTGTTTTTTTTTTGTCTTCTACAATTTCCTTCCCAAGCAAATATGTGGAACTACATATATACTCAAGTAAACCATGCAATGAGAATGTCTTATCAATATGACGGACTAATTTTCTAGGTTGGAAAGAACTTGAGCTCTCCACTGGAAACCAAATTATGCTGGTTGAGGTGGTCATCGCAGACATTCTTATTTTTAGTATGATGGACCTTCCCAACTGGTCTCAGAACATTAGTAAGAAATAGAGAGTTCACGTGAAGTATACTATCTCTATAAAAACAATAAATAGTAGCCCAAGTGCCCAACATATAGTATTGGATGTATGAAGTGAATGAGAACTGTGTACAATGTTATGTGCATGCATTATGACTTATGAAATGTTGCATACAAATAGCATTTCTTTTGTGTTAGTACCAAAGTGAATGAGGCGGTGTTTTCTTAGTTCTATTTTCCCTAGCTTTATAACAAATAAACTCAACCTTCAGCAACATACCTTAGCAGAATAAGAATATTCATCATCACCAGACCAACGGTCTAAGGATGATGCTGAGCAAATAATATCAGCAGATGTAATAACAACACCAACTTTCGTTGTTTCATTCCAATCAATCAGAAATCCAGAGCAGCGTGCTAAGGGATTTCCATCTGCGAATATATACGTAATATTATCAAACATAGCAAATTTTCTATAGCAGTAAATAAGAGGTACAAATTGTGTACCAATGCAAGATGAAAGACCCAGAACATATTTTGCAGCACCAAGTATCGACTTTGTTGCAGATTCACGGATGTCGAGTAACTTTGGGTGAAGCAGACAAGAAGAAGATACATCCGTATTCAGTGTAGGAAAGCTAAGTTGATGAGCTGTAAAATAAGACCAACATCAATGCATAGATCATCTCTCCCACCTTGTAACTTACTACATCATTGAATATCATAGCTAACATTATGAGATGAGTCATGACTAGATTAGTACATTATTAAATATTAAATGATGAGTCATGGCACATTTAATGAACATAGCGCTTAGTTTTGAATGGTAGTACTGTATAAGGAAAGGGGGAGTTGAATAGTACCTCTTTTTTTATGGAATTCTTTTGATTTCTTCTTGTAAAGATCAATGGTGTCGAAATCAATCTCTTGGTCATCAGGCAAGTAGGGCTCACAGAGGGGAGAGCTCGGTGCGGACGAGATCTCCTCCCCCCCTACCTCCTCCATCTTCGTCAGCGGTTTTTCCTCCTCAATGAGATTGGCCCGAATCCTTTTGCGCTCTCTCACTGCCGTATCAGTGGCCAGCGTCGTCCTCCGGGATCGGGATCGCTCCGATGGTGGTGGAAGGGGCTCCTGCGACCCCGGCCGGCACCTTGCTGCCCTCGAACGGGTCACCCTCGTCGTCGACCCCGACCCCGGCGCATCGCCCTCTTTCGCAGCATCGGCATCGGCAGCGACAGGCACCCCGCTGTCCGGCTTTCGACTTGTTGCCCTCGGTGCATTAGACTTCCTCCGCCTAAATCTGGGTCCCGTAGAGACAGGTGCCATACCTCTGCCGCCGCCGCCGCCGCCGCCGCCTCCGCCTCCGCCTCCGCCTCCGCCTGCGAGGTCTAGGTCTGAGACGGTAGGAGAGTCGCCGGAGAATTCGAGAAGCTACGTGTGTGGGTTTCTTTTTCCTTTTTCTTTTAACTCTCCCCTACGATTTGAATCTGACGGTTTATGTTTTTTTCTCTCGACTTCAGAGGCTTTGTGGCTGATATTTCCTTTAGCAATACGAGTTACAAACGAATTTTTTTTGAAAATAATATTATTTTAATGGAAAATCACAAAATTATAGGTCGGCTAGACGAAATCGCAAGTTTAGCGCCCTGTCGAACTGGGGCAGTTCGATAGGTACCCCTGTCGAACTGGGTACTGTCGAACTGCCCTAGTTCGATAGGCTAGTTGTCCAAGAAAAAAAATAAAAAAGTACTTGCTACAGTGCCCGATAGGGACGTATCGAACAGGGGGAGTTCGATAGGGCGCGTGGCATGGACGTATCGAACAGCGGGAGTTCGATAGGCAGCGTCGCTACAGTGTCGCTACAGTGTTTTTCCTTTTTTTATGTTATTTTATTACCTGTCGAACTGCCCTTTCGAACTGCCTCCGTTCGACAGGGTGCTAAACTTGCGATTTCGTCTAACTGACCTATAATTTTGCGATTTTCCATTAAAATAATATTATTTCCAAAAAAAACTCGGCCTACTTCGACTCTGATATGGGCTTCTTCTGGGATTCCAAAGGCCTAAAGAATCGGTGTGGGCTAGTGTTGGGATTTTTCTTGGGCTGTTACTATATAGGGGAAATAATAAGTCTCTTATGTCTCTCTTTTCTCTCTTGTCCTAGTTGAATCGTGTCCCTCAACAACCAAATATATAACATTAATTCCTCGAAAATGCTTACCATTGGCCAT
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| CDS seq | ATGGCCAATGGTCAGTTAGACGAAATCGCAAGTTTAGCACCCTGTCGAACGGAGGCAGTTCGAAAGGGCAGTTCGACAGACCTAGACCTCGCAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGCGGCGGCGGCGGCGGCGGCAGAGGTATGGCACCTGTCTCTACGGGACCCAGATTTAGGCGGAGGAAGTCTAATGCACCGAGGGCAACAAGTCGAAAGCCGGACAGCGGGGTGCCTGTCGCTGCCGATGCCGATGCTGCGAAAGAGGGCGATGCGCCGGGGTCGGGGTCGACGACGAGGGTGACCCGTTCGAGGGCAGCAAGGTGCCGGCCGGGGTCGCAGGAGCCCCTTCCACCACCATCGGAGCGATCCCGATCCCGGAGGACGACGCTGGCCACTGATACGGCAGTGAGAGAGCGCAAAAGGATTCGGGCCAATCTCATTGAGGAGGAAAAACCGCTGACGAAGATGGAGGAGGTAGGGGGGGAGGAGATCTCGTCCGCACCGAGCTCTCCCCTCTGTGAGCCCTACTTGCCTGATGACCAAGAGATTGATTTCGACACCATTGATCTTTACAAGAAGAAATCAAAAGAATTCCATAAAAAAAGAGATGGAAATCCCTTAGCACGCTGCTCTGGATTTCTGATTGATTGGAATGAAACAACGAAAGTTGGTGTTGTTATTACATCTGCTGATATTATTTGCTCAGCATCATCCTTAGACCGTTGGTCTGGTGATGATGAATATTCTTATTCTGCTAAGGTCTTTGTGCACCTACTGGACGACACCACGGTGGAGGGGCGCTTGATTTATGCTCAGACACACTACAATCTTGCTTTGTTCGAGATTATAGTGGAATCCCCAGTTCAGATACCTAATTTTACTTTCAACCTGAATTATGCTCAACAAATATTTGTGTTAGGAAGGGATGAGAACTTGTGTCTAAGTATAAGTCATGGCAAAGTACAATACTGCAATCCGTTTTTGTGTGGTCGGCATCACTACATGTATGTTGATACTGCCACCCCTAAGTGTGCCTTGGGAGGGCTAGTCATTGACTTTGAGGGGAGCACGAGGTGTATCCCCCGCCCTCAACTTGGGGTCAAGCTTTCAGCCATTAAATTTCTGGACCTTCCTCATATAGAGATGATATTACGCAAGATCCATATTTGCGATGGGCTCATTGTCGAAGAAGTGTCATCAGGGTCTACTATTGAGAAACTGGGAGTCAGAGTCGGCGATATCATTCAGCATTTAAATGGAGAATGGGTTTCTGATACAATTCAGTTAGAAGAAATGTTGCTGAGACTTTCTGAGGATCATTTTGACAAAGGAAATGGTCTCAATTCCACATTGGACATTAAAGTTGGTTTGTTTCACATACGCAATGGAGCTCGAAACACCATAAATTTGACGACAGTTGTCTCAGAAAATGGAGAAGTTGTTAAGAGGGGTTCATTCGCTGTTTCTGTCCCTACTCGGGAGGAGATTTCTGCTATGTACGCACTTCAGGAAGCAACTACAGGCATGTGA
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| Protein seq | MANGQLDEIASLAPCRTEAVRKGSSTDLDLAGGGGGGGGGGGGGGGGRGMAPVSTGPRFRRRKSNAPRATSRKPDSGVPVAADADAAKEGDAPGSGSTTRVTRSRAARCRPGSQEPLPPPSERSRSRRTTLATDTAVRERKRIRANLIEEEKPLTKMEEVGGEEISSAPSSPLCEPYLPDDQEIDFDTIDLYKKKSKEFHKKRDGNPLARCSGFLIDWNETTKVGVVITSADIICSASSLDRWSGDDEYSYSAKVFVHLLDDTTVEGRLIYAQTHYNLALFEIIVESPVQIPNFTFNLNYAQQIFVLGRDENLCLSISHGKVQYCNPFLCGRHHYMYVDTATPKCALGGLVIDFEGSTRCIPRPQLGVKLSAIKFLDLPHIEMILRKIHICDGLIVEEVSSGSTIEKLGVRVGDIIQHLNGEWVSDTIQLEEMLLRLSEDHFDKGNGLNSTLDIKVGLFHIRNGARNTINLTTVVSENGEVVKRGSFAVSVPTREEISAMYALQEATTGM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g05390 | LOC_Os05g05390.1 | Chr05 | 2674520 | 2679534 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCAATGGTCAGTTAGACGAAATCGCAAGTTTAGCACCCTGTCGAACGGAGGCAGTTCGAAAGGGCAGTTCGACAGACCTAGACCTCGCAGGCGGAGGCGGAGGCGGAGGCGGAGGCGGCGGCGGCGGCGGCGGCGGCAGAGGTATGGCACCTGTCTCTACGGGACCCAGATTTAGGCGGAGGAAGTCTAATGCACCGAGGGCAACAAGTCGAAAGCCGGACAGCGGGGTGCCTGTCGCTGCCGATGCCGATGCTGCGAAAGAGGGCGATGCGCCGGGGTCGGGGTCGACGACGAGGGTGACCCGTTCGAGGGCAGCAAGGTGCCGGCCGGGGTCGCAGGAGCCCCTTCCACCACCATCGGAGCGATCCCGATCCCGGAGGACGACGCTGGCCACTGATACGGCAGTGAGAGAGCGCAAAAGGATTCGGGCCAATCTCATTGAGGAGGAAAAACCGCTGACGAAGATGGAGGAGGTAGGGGGGGAGGAGATCTCGTCCGCACCGAGCTCTCCCCTCTGTGAGCCCTACTTGCCTGATGACCAAGAGATTGATTTCGACACCATTGATCTTTACAAGAAGAAATCAAAAGAATTCCATAAAAAAAGAGATGGAAATCCCTTAGCACGCTGCTCTGGATTTCTGATTGATTGGAATGAAACAACGAAAGTTGGTGTTGTTATTACATCTGCTGATATTATTTGCTCAGCATCATCCTTAGACCGTTGGTCTGGTGATGATGAATATTCTTATTCTGCTAAGGTCTTTGTGCACCTACTGGACGACACCACGGTGGAGGGGCGCTTGATTTATGCTCAGACACACTACAATCTTGCTTTGTTCGAGATTATAGTGGAATCCCCAGTTCAGATACCTAATTTTACTTTCAACCTGAATTATGCTCAACAAATATTTGTGTTAGGAAGGGATGAGAACTTGTGTCTAAGTATAAGTCATGGCAAAGTACAATACTGCAATCCGTTTTTGTGTGGTCGGCATCACTACATGTATGTTGATACTGCCACCCCTAAGTGTGCCTTGGGAGGGCTAGTCATTGACTTTGAGGGGAGCACGAGGTGTATCCCCCGCCCTCAACTTGGGGTCAAGCTTTCAGCCATTAAATTTCTGGACCTTCCTCATATAGAGATGATATTACGCAAGATCCATATTTGCGATGGGCTCATTGTCGAAGAAGTGTCATCAGGGTCTACTATTGAGAAACTGGGAGTCAGAGTCGGCGATATCATTCAGCATTTAAATGGAGAATGGGTTTCTGATACAATTCAGTTAGAAGAAATGTTGCTGAGACTTTCTGAGGATCATTTTGACAAAGGAAATGGTCTCAATTCCACATTGGACATTAAAGTTGGTTTGTTTCACATACGCAATGGAGCTCGAAACACCATAAATTTGACGACAGTTGTCTCAGAAAATGGAGAAGTTGTTAAGAGGGGTTCATTCGCTGTTTCTGTCCCTACTCGGGAGGAGATTTCTGCTATGTACGCACTTCAGGAAGCAACTACAGGCATGTGA
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| Protein seq | MANGQLDEIASLAPCRTEAVRKGSSTDLDLAGGGGGGGGGGGGGGGGRGMAPVSTGPRFRRRKSNAPRATSRKPDSGVPVAADADAAKEGDAPGSGSTTRVTRSRAARCRPGSQEPLPPPSERSRSRRTTLATDTAVRERKRIRANLIEEEKPLTKMEEVGGEEISSAPSSPLCEPYLPDDQEIDFDTIDLYKKKSKEFHKKRDGNPLARCSGFLIDWNETTKVGVVITSADIICSASSLDRWSGDDEYSYSAKVFVHLLDDTTVEGRLIYAQTHYNLALFEIIVESPVQIPNFTFNLNYAQQIFVLGRDENLCLSISHGKVQYCNPFLCGRHHYMYVDTATPKCALGGLVIDFEGSTRCIPRPQLGVKLSAIKFLDLPHIEMILRKIHICDGLIVEEVSSGSTIEKLGVRVGDIIQHLNGEWVSDTIQLEEMLLRLSEDHFDKGNGLNSTLDIKVGLFHIRNGARNTINLTTVVSENGEVVKRGSFAVSVPTREEISAMYALQEATTGM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.887697 | 0.676581 | 1.001531 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0146900 | RBH | 1.333140 | 1.160752 | 5.209132 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g05330 | SBH | 0.200957 | 0.000000 | 0.234872 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0146900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0003250 | RBH | 0.877971 | 8.793082 | 8.046026 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0003310 | RBH | 0.000000 | 3.809316 | 2.700244 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0003260 | RBH | 1.101241 | 8.483131 | 8.650749 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0003320 | RBH | 0.183529 | 0.359065 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0003380 | RBH | 12.509355 | 10.684314 | 26.746279 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0039000 | RBH | 4.068334 | 7.202201 | 14.99224 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0003160 | RBH | 0.424927 | 0.522174 | 2.177583 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0040000 | RBH | 4.064163 | 7.763494 | 8.5440555 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0003280 | RBH | 0.105625 | 0.161332 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0003200 | RBH | 0.380209 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0003310 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0003330 | RBH | 1.429494 | 0.611934 | 1.418078 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0003380 | RBH | 0.198556 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G003200 | RBH | 0.548474 | 1.633263 | 2.657128 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0003400 | RBH | 1.109136 | 8.559586 | 12.050165 |
