Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g03400 | OGI:04026240 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:1410124-1413235 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCCAAGAAAGATCAGAGCATATCTGAGCCCATTCCCATCAATTCCACCATGAAAAAAGAGGAGAAATGGCTAGATGAAGCTTTGGATCGGATATTGGAGAAGTTTGAACAAATGGAGGCCAAGCGTAGGTGTGATGAGAAGATTGATCGAATTTTGAAGAAGTTGGACGAGATAGATGCTAATAGGAACAAGTTCTTCGAGGAGATGGGTGCCTCTATCAAGGCGACCACTGCCGTACTCAATGCTGGATCATCTCTACCACCCATGGCACCGTCTCCTCTAGCGCCTACCAAGTGTTTGACGGAATGCTCCAACAACAACATCACTTGGGTGGCTGCGAATTCAAGTCACATTGGTGAGGTGCTTGCTCCGATAGCTGCCTGGGAGCTAGGAGACAGAAAGGACATGGACCAAGCTCCCTACATTGTCACCAAGGACCTCCTCAAGGTCACGCCCACCAAGTGTTCGACGATATGCTCTAGCTCTGACACCAAGCCCGATCTCACTGTAGTTGCTCCGGTTACTTGCACCACCCTCGCTGTGTCATCAATGGTGTTGTTAGCTTCTGACGGCACCACTGGCAACACTAACATTGACGCCCCTGTTTGTTTCAAGGAGACGCATGCCATGTGCTCGATGGTCGGCCTCGACGTCAATGGTGGCAATGACCAAGCTGTGGTTGCATTCCAAACCAAGACAGTGGTGTCCAAGGACGTTTCAGCATCCGTCCACCCCATGGGCAACCTAGCAACCAGATTATTCGTTGACAAGATGATGGTACAATGTGAGCTGCAGCCAGTACCTTGTGAAACGTTCAACTCCTATGACACAAGAGTACATATCTTGCAACCTTGGCCGCCGACAATTAAAGTAAGTTGGCTTGCACTGATATTTATTGAAATTGGAGTAGCTCACACTGATATGATGGATAAAGTGTTGCATTGGGCTGATCTAAAACCATGGCCTCCACCTTCGGGAAATGGCAGTGTGCATTTCCTGATCAGTGCACATGCAAGTGTTGAATTACAGGAATTAGATTTGGCTGAGGCAAGGGAAGGTGAGTTATTATCAGTTGTTGACCTATGGTTTGTTGAGATGTGGCACTCAGGTTATGCAATCCTCAATGAAAATTATGAAGACTATAACCTGCTTCAACTCCTATTATGCAAGAAGTGGCTTAAACTTGTACTATGTGAAATGTGCTGTAGAAGATATGAACTGAAGTTGCCAATTGGGTGTGATCCTAAACAGTACATTGTTGACTTGATTCTAGAGTTGGAAGGTACTTTGGAGGCTCTGGGTGATTATTGTTTCCTGTGTCAGGGAGTATGGTCTGAATTCATAGTTGGCAATAATTTAGATTTTTTGAAGCAGCTAGAATTAACATCTGATAAGCTGGTGCAAGTAACCTCGAATCTAGTAAGAACATGTTATATGCAGAAGTTAGGAACTGGAGAGGAACACATACTCAAATTCAAATATGCTTGTAATGGATGGCCCACAAGGAAGTTCAGAAAGATGCCAAAGAATGATTGTAATGGACACTGGAAGATGTCTAGATTGTTTGTGAACCTACATTACTTCTCCTTTGGCTTATCGACTGCTAAAACAGTTCAAAAGGGCAGCTGCTATCTAAGGGGCTCTGACAAGGTGTTGTTAACTAAGTTGGAAATGCAGAGTTGTGTGAACCTGGGCGATGATAATGTTTCTTGTCACACGATGGCTCCTAGTGAAGGAATGGATTTTTGTGAGTTAAAAGTGCTTGAGGTAACAAGTGATGGATGCCCAATATTCTGGATTTTGGTTCTAGCAGCTACTGAATGGAAGGTTGGAAATTATACAATTCTAACTGAAGGGACTTATACCAAGATGGCTGTTTGTTCAGAGCAGAAATTACAATGTGATGCATTAAAAAGAAACCAGACAGGGGCAAAGCATGTTATCCAGAGGAACACATTTGTTGCTCCTGGGAATTTAGCCTACTCAGTAACCAACAACTATCTACCAGAAGGCAACAAACATAGAACTATGGCCACAAGGGTGAATGTTTTTGGACATGGTATCCACTCAACAGAAAACCAAGGATTTTATTCAGAAGGGATTCAGGTGCATTCGAGTGTCCAGAAAATTCCTGCTCTTGTACTGAACCGTGAATTAAGTATGGATTTTAGCAAAGATATTGCAGCTCCAATGAAATATGCTCTACAAGTTTCTGAATCTTTTGAGCTCAACAGGAGCAAAAAGGTACATGATCTATTCCATTTCGACGATGGTTTACTGTCTAGCAGCCAAGAATTGGAGCACCCATGGGATCCAGGAGGTTTGCTTCATCGGCTTGGGGACAAGACGATTTTCAAGGAGAGGGGATTGTTAGGACCGGATGGGCTATGGTTGGACCGTTACAACAATCCTCCAATCCAGCCCAAGAAGGCCCAGTTGGAGAGGCAACAAAAGCAGCAGCAGCAGGAAGGTTGGGGGCATCGATTGATCACTTGGACTTGGTGGAGCTGAAGCTCTCGACGGCGGCGGCGACCTGGGCAGCCGGTGGGCACCCTTGTCGATCTCTCTCCCCTACCTCTCCTCCTACTTACAGCCTTCTCTCTCAGCTCTAGAAGCTTCCAGAATTTGTATTACTTAGTTTCTTCTTCTCTTTTCATCCCAAAACAATTGTTCCTTGTATGGTGGATGCTTGCTATTAAGTTGGAAGAAGTGGGTTGTTAACAATTCTGAATCTACTAACAGATGCAAGGAGTTTAACAGATCAGTCAACTAATCTCTGAAAATGAAATGCAACATTCACATAAAGTTGCAACGATGCTTCCCCTACTCCAGCAGAAACAAAACACAGATAACTACATGACAAAACAGATGAATTTACTCACATGACAAGTCAGCCGATGCAGAAGGGAATGGACCAAACAGGGTGTTGTAGTTGAGCCTCTTGATCAAATTTCACAGCAAAAGAGTTAACTGACTGACAGGCTCCACAAATAATTAACATGGCAACAATATTGGGATGGGTCATTCAGAATAAAGAAGAAAAAAATGCAGCCATGCAGGCTGTTGTTGTTCTGAATAACTCAGGAAAGCACATATTAACTTTTTATTA
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| CDS seq | ATGTCCAAGAAAGATCAGAGCATATCTGAGCCCATTCCCATCAATTCCACCATGAAAAAAGAGGAGAAATGGCTAGATGAAGCTTTGGATCGGATATTGGAGAAGTTTGAACAAATGGAGGCCAAGCGTAGGTGTGATGAGAAGATTGATCGAATTTTGAAGAAGTTGGACGAGATAGATGCTAATAGGAACAAGTTCTTCGAGGAGATGGGTGCCTCTATCAAGGCGACCACTGCCGTACTCAATGCTGGATCATCTCTACCACCCATGGCACCGTCTCCTCTAGCGCCTACCAAGTGTTTGACGGAATGCTCCAACAACAACATCACTTGGGTGGCTGCGAATTCAAGTCACATTGGTGAGGTGCTTGCTCCGATAGCTGCCTGGGAGCTAGGAGACAGAAAGGACATGGACCAAGCTCCCTACATTGTCACCAAGGACCTCCTCAAGGTCACGCCCACCAAGTGTTCGACGATATGCTCTAGCTCTGACACCAAGCCCGATCTCACTGTAGTTGCTCCGGTTACTTGCACCACCCTCGCTGTGTCATCAATGGTGTTGTTAGCTTCTGACGGCACCACTGGCAACACTAACATTGACGCCCCTGTTTGTTTCAAGGAGACGCATGCCATGTGCTCGATGGTCGGCCTCGACGTCAATGGTGGCAATGACCAAGCTGTGGTTGCATTCCAAACCAAGACAGTGGTGTCCAAGGACGTTTCAGCATCCGTCCACCCCATGGGCAACCTAGCAACCAGATTATTCGTTGACAAGATGATGGTACAATGTGAGCTGCAGCCAGTACCTTGTGAAACGTTCAACTCCTATGACACAAGAGTACATATCTTGCAACCTTGGCCGCCGACAATTAAAGTAAGTTGGCTTGCACTGATATTTATTGAAATTGGAGTAGCTCACACTGATATGATGGATAAAGTGTTGCATTGGGCTGATCTAAAACCATGGCCTCCACCTTCGGGAAATGGCAGTGTGCATTTCCTGATCAGTGCACATGCAAGTGTTGAATTACAGGAATTAGATTTGGCTGAGGCAAGGGAAGGTGAGTTATTATCAGTTGTTGACCTATGGTTTGTTGAGATGTGGCACTCAGGTTATGCAATCCTCAATGAAAATTATGAAGACTATAACCTGCTTCAACTCCTATTATGCAAGAAGTGGCTTAAACTTGTACTATGTGAAATGTGCTGTAGAAGATATGAACTGAAGTTGCCAATTGGGTGTGATCCTAAACAGTACATTGTTGACTTGATTCTAGAGTTGGAAGGTACTTTGGAGGCTCTGGGTGATTATTGTTTCCTGTGTCAGGGAGTATGGTCTGAATTCATAGTTGGCAATAATTTAGATTTTTTGAAGCAGCTAGAATTAACATCTGATAAGCTGGTGCAAGTAACCTCGAATCTAGTAAGAACATGTTATATGCAGAAGTTAGGAACTGGAGAGGAACACATACTCAAATTCAAATATGCTTGTAATGGATGGCCCACAAGGAAGTTCAGAAAGATGCCAAAGAATGATTGTAATGGACACTGGAAGATGTCTAGATTGTTTGTGAACCTACATTACTTCTCCTTTGGCTTATCGACTGCTAAAACAGTTCAAAAGGGCAGCTGCTATCTAAGGGGCTCTGACAAGGTGTTGTTAACTAAGTTGGAAATGCAGAGTTGTGTGAACCTGGGCGATGATAATGTTTCTTGTCACACGATGGCTCCTAGTGAAGGAATGGATTTTTGTGAGTTAAAAGTGCTTGAGGTAACAAGTGATGGATGCCCAATATTCTGGATTTTGGTTCTAGCAGCTACTGAATGGAAGGTTGGAAATTATACAATTCTAACTGAAGGGACTTATACCAAGATGGCTGTTTGTTCAGAGCAGAAATTACAATGTGATGCATTAAAAAGAAACCAGACAGGGGCAAAGCATGTTATCCAGAGGAACACATTTGTTGCTCCTGGGAATTTAGCCTACTCAGTAACCAACAACTATCTACCAGAAGGCAACAAACATAGAACTATGGCCACAAGGGTGAATGTTTTTGGACATGGTATCCACTCAACAGAAAACCAAGGATTTTATTCAGAAGGGATTCAGGTGCATTCGAGTGTCCAGAAAATTCCTGCTCTTGTACTGAACCGTGAATTAAGTATGGATTTTAGCAAAGATATTGCAGCTCCAATGAAATATGCTCTACAAGTTTCTGAATCTTTTGAGCTCAACAGGAGCAAAAAGGTACATGATCTATTCCATTTCGACGATGGTTTACTGTCTAGCAGCCAAGAATTGGAGCACCCATGGGATCCAGGAGGTTTGCTTCATCGGCTTGGGGACAAGACGATTTTCAAGGAGAGGGGATTGTTAGGACCGGATGGGCTATGGTTGGACCGTTACAACAATCCTCCAATCCAGCCCAAGAAGGCCCAGTTGGAGAGGCAACAAAAGCAGCAGCAGCAGGAAGGTTGGGGGCATCGATTGATCACTTGGACTTGGTGGAGCTGA
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| Protein seq | MSKKDQSISEPIPINSTMKKEEKWLDEALDRILEKFEQMEAKRRCDEKIDRILKKLDEIDANRNKFFEEMGASIKATTAVLNAGSSLPPMAPSPLAPTKCLTECSNNNITWVAANSSHIGEVLAPIAAWELGDRKDMDQAPYIVTKDLLKVTPTKCSTICSSSDTKPDLTVVAPVTCTTLAVSSMVLLASDGTTGNTNIDAPVCFKETHAMCSMVGLDVNGGNDQAVVAFQTKTVVSKDVSASVHPMGNLATRLFVDKMMVQCELQPVPCETFNSYDTRVHILQPWPPTIKVSWLALIFIEIGVAHTDMMDKVLHWADLKPWPPPSGNGSVHFLISAHASVELQELDLAEAREGELLSVVDLWFVEMWHSGYAILNENYEDYNLLQLLLCKKWLKLVLCEMCCRRYELKLPIGCDPKQYIVDLILELEGTLEALGDYCFLCQGVWSEFIVGNNLDFLKQLELTSDKLVQVTSNLVRTCYMQKLGTGEEHILKFKYACNGWPTRKFRKMPKNDCNGHWKMSRLFVNLHYFSFGLSTAKTVQKGSCYLRGSDKVLLTKLEMQSCVNLGDDNVSCHTMAPSEGMDFCELKVLEVTSDGCPIFWILVLAATEWKVGNYTILTEGTYTKMAVCSEQKLQCDALKRNQTGAKHVIQRNTFVAPGNLAYSVTNNYLPEGNKHRTMATRVNVFGHGIHSTENQGFYSEGIQVHSSVQKIPALVLNRELSMDFSKDIAAPMKYALQVSESFELNRSKKVHDLFHFDDGLLSSSQELEHPWDPGGLLHRLGDKTIFKERGLLGPDGLWLDRYNNPPIQPKKAQLERQQKQQQQEGWGHRLITWTWWS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g03400 | LOC_Os05g03400.1 | Chr05 | 1410124 | 1413235 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCCAAGAAAGATCAGAGCATATCTGAGCCCATTCCCATCAATTCCACCATGAAAAAAGAGGAGAAATGGCTAGATGAAGCTTTGGATCGGATATTGGAGAAGTTTGAACAAATGGAGGCCAAGCGTAGGTGTGATGAGAAGATTGATCGAATTTTGAAGAAGTTGGACGAGATAGATGCTAATAGGAACAAGTTCTTCGAGGAGATGGGTGCCTCTATCAAGGCGACCACTGCCGTACTCAATGCTGGATCATCTCTACCACCCATGGCACCGTCTCCTCTAGCGCCTACCAAGTGTTTGACGGAATGCTCCAACAACAACATCACTTGGGTGGCTGCGAATTCAAGTCACATTGGTGAGGTGCTTGCTCCGATAGCTGCCTGGGAGCTAGGAGACAGAAAGGACATGGACCAAGCTCCCTACATTGTCACCAAGGACCTCCTCAAGGTCACGCCCACCAAGTGTTCGACGATATGCTCTAGCTCTGACACCAAGCCCGATCTCACTGTAGTTGCTCCGGTTACTTGCACCACCCTCGCTGTGTCATCAATGGTGTTGTTAGCTTCTGACGGCACCACTGGCAACACTAACATTGACGCCCCTGTTTGTTTCAAGGAGACGCATGCCATGTGCTCGATGGTCGGCCTCGACGTCAATGGTGGCAATGACCAAGCTGTGGTTGCATTCCAAACCAAGACAGTGGTGTCCAAGGACGTTTCAGCATCCGTCCACCCCATGGGCAACCTAGCAACCAGATTATTCGTTGACAAGATGATGGTACAATGTGAGCTGCAGCCAGTACCTTGTGAAACGTTCAACTCCTATGACACAAGAGTACATATCTTGCAACCTTGGCCGCCGACAATTAAAGTAAGTTGGCTTGCACTGATATTTATTGAAATTGGAGTAGCTCACACTGATATGATGGATAAAGTGTTGCATTGGGCTGATCTAAAACCATGGCCTCCACCTTCGGGAAATGGCAGTGTGCATTTCCTGATCAGTGCACATGCAAGTGTTGAATTACAGGAATTAGATTTGGCTGAGGCAAGGGAAGGTGAGTTATTATCAGTTGTTGACCTATGGTTTGTTGAGATGTGGCACTCAGGTTATGCAATCCTCAATGAAAATTATGAAGACTATAACCTGCTTCAACTCCTATTATGCAAGAAGTGGCTTAAACTTGTACTATGTGAAATGTGCTGTAGAAGATATGAACTGAAGTTGCCAATTGGGTGTGATCCTAAACAGTACATTGTTGACTTGATTCTAGAGTTGGAAGGTACTTTGGAGGCTCTGGGTGATTATTGTTTCCTGTGTCAGGGAGTATGGTCTGAATTCATAGTTGGCAATAATTTAGATTTTTTGAAGCAGCTAGAATTAACATCTGATAAGCTGGTGCAAGTAACCTCGAATCTAGTAAGAACATGTTATATGCAGAAGTTAGGAACTGGAGAGGAACACATACTCAAATTCAAATATGCTTGTAATGGATGGCCCACAAGGAAGTTCAGAAAGATGCCAAAGAATGATTGTAATGGACACTGGAAGATGTCTAGATTGTTTGTGAACCTACATTACTTCTCCTTTGGCTTATCGACTGCTAAAACAGTTCAAAAGGGCAGCTGCTATCTAAGGGGCTCTGACAAGGTGTTGTTAACTAAGTTGGAAATGCAGAGTTGTGTGAACCTGGGCGATGATAATGTTTCTTGTCACACGATGGCTCCTAGTGAAGGAATGGATTTTTGTGAGTTAAAAGTGCTTGAGGTAACAAGTGATGGATGCCCAATATTCTGGATTTTGGTTCTAGCAGCTACTGAATGGAAGGTTGGAAATTATACAATTCTAACTGAAGGGACTTATACCAAGATGGCTGTTTGTTCAGAGCAGAAATTACAATGTGATGCATTAAAAAGAAACCAGACAGGGGCAAAGCATGTTATCCAGAGGAACACATTTGTTGCTCCTGGGAATTTAGCCTACTCAGTAACCAACAACTATCTACCAGAAGGCAACAAACATAGAACTATGGCCACAAGGGTGAATGTTTTTGGACATGGTATCCACTCAACAGAAAACCAAGGATTTTATTCAGAAGGGATTCAGGTGCATTCGAGTGTCCAGAAAATTCCTGCTCTTGTACTGAACCGTGAATTAAGTATGGATTTTAGCAAAGATATTGCAGCTCCAATGAAATATGCTCTACAAGTTTCTGAATCTTTTGAGCTCAACAGGAGCAAAAAGGTACATGATCTATTCCATTTCGACGATGGTTTACTGTCTAGCAGCCAAGAATTGGAGCACCCATGGGATCCAGGAGGTTTGCTTCATCGGCTTGGGGACAAGACGATTTTCAAGGAGAGGGGATTGTTAGGACCGGATGGGCTATGGTTGGACCGTTACAACAATCCTCCAATCCAGCCCAAGAAGGCCCAGTTGGAGAGGCAACAAAAGCAGCAGCAGCAGGAAGGTTGGGGGCATCGATTGATCACTTGGACTTGGTGGAGCTGA
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| Protein seq | MSKKDQSISEPIPINSTMKKEEKWLDEALDRILEKFEQMEAKRRCDEKIDRILKKLDEIDANRNKFFEEMGASIKATTAVLNAGSSLPPMAPSPLAPTKCLTECSNNNITWVAANSSHIGEVLAPIAAWELGDRKDMDQAPYIVTKDLLKVTPTKCSTICSSSDTKPDLTVVAPVTCTTLAVSSMVLLASDGTTGNTNIDAPVCFKETHAMCSMVGLDVNGGNDQAVVAFQTKTVVSKDVSASVHPMGNLATRLFVDKMMVQCELQPVPCETFNSYDTRVHILQPWPPTIKVSWLALIFIEIGVAHTDMMDKVLHWADLKPWPPPSGNGSVHFLISAHASVELQELDLAEAREGELLSVVDLWFVEMWHSGYAILNENYEDYNLLQLLLCKKWLKLVLCEMCCRRYELKLPIGCDPKQYIVDLILELEGTLEALGDYCFLCQGVWSEFIVGNNLDFLKQLELTSDKLVQVTSNLVRTCYMQKLGTGEEHILKFKYACNGWPTRKFRKMPKNDCNGHWKMSRLFVNLHYFSFGLSTAKTVQKGSCYLRGSDKVLLTKLEMQSCVNLGDDNVSCHTMAPSEGMDFCELKVLEVTSDGCPIFWILVLAATEWKVGNYTILTEGTYTKMAVCSEQKLQCDALKRNQTGAKHVIQRNTFVAPGNLAYSVTNNYLPEGNKHRTMATRVNVFGHGIHSTENQGFYSEGIQVHSSVQKIPALVLNRELSMDFSKDIAAPMKYALQVSESFELNRSKKVHDLFHFDDGLLSSSQELEHPWDPGGLLHRLGDKTIFKERGLLGPDGLWLDRYNNPPIQPKKAQLERQQKQQQQEGWGHRLITWTWWS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g35970 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017700 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0001860 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0017640 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0017270 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0017650 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0001840 | RBH | 0.000000 | 0.069226 | 0.357031 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0342800 | SBH | 0.285678 | 0.7415595 | 2.579632 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017960 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0017630 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0017420 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
