Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g02150 | OGI:05001710 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:658106-660255 | ||||||||
| Gene Symbol | DOF19, OsDof19, Dof19, OsDof-19 | ||||||||||
| DNA seq | TTAATTGACATATAATAGGAGTTTCCATTAACAAAATGAACAACAGTAGTGGTACACATAACGTACGTGGCCCCAAATGCACGAGAGAGAAAAAAAAACCCTAACATTTAAAAGAAAAGAAGAAGAAGAAGAAACACATCAAGTGAGATTAGATCATGCATGCAAAGCTAAACTAGCTAGAAAATACTAGTACTACTTTTGCATGATCAAAATTAAACACACACTCCTCCAGTCTTCATTGGGACACATCACCTAATTGCAAGTGCAAAAAATGCAAATGCCTCGATCTCGATCTCGATCGATCGAGATCAACCATCCTTAAACTTAATTTGGTTCTATATCTCACACCACCATCACCATCACCATCGATATGATCGATCACACGCCCTATTATGAATATATATCTAGCTAGCTAATCGTAGAGAGTCTGCATTATATTTGCAGATCTCTGCCATTAGCTAGCTAGATTGTGATTAGTTATAGGCTAGCTCTCGATCATTACAAGAGATGGTTACCTGTGGTTGCACTGGAGTAGGAGGTGTATCCTCCAGCGAGGTGATGATCGCCATACATGCCCCTTGGGTAGCCTTCTCTCTTCGATGATGGCATCGCATGGTGGAGCTCTCCACCGTCTTCGCCGCCGCCGCTGCCATGGCCGTCGCCGTCTAGGCCTAGCTGGAACATCCCCGGCATTGCCATTGCCGGCGGTGGCGCCGCCATCGCCGCCTGGTGATCCATGGCGTGGAAGAACGGGAAGCTCTGCATCTGCTGTAGTCTCCATTGCTCGAGGCCGGTGGCGGCGCCGACGGAGTAGCAGCCGGCCGCGTCGACGGGCGGTGGCTTGCCGGCGGCCGCCGCCATGCCAGAGAAGGTGGAGCCGAGGCTCATGGCGTCGAAGTCGGCGAGGCGGAGCAGCGGCGGCAGGATGGAGAGGTTGCCGCCCAGCATCGCCGGGAGGGCGGGCGCGTTGGGCGTGGCGCAGGTGGAGGACGTCGTCGTCGTCGTCGTCGACCCCGCTGGCGTCGAGCCGGCGGTGGTGGTGGCGGCTGAGGCGGAGCCCGCCGCGGACGCCGGCTTGGGCTTGGCGCGCTTGGCGTGGCGGCGGTAGCCGCCGCCGACGGGGACGTTGCGGAGCGCGCCGCCGCGGGTCCAGTAGCGGCGGCAGGCGCGGCAGAAGTGGCGGGGCTGGGAGAGGGAGTAGTTGTTGAAGTAGCAGAACTTGGTGTTGGTGGAGTCGCAGCGCGGGCACTTGAGCCCCGGCTCCGGCAGCGGGATCCTCGCCAGCCGCGCCCTCTCCGACATCGACATCGGCTTCGCCGGCCCCACCGCGCCGCCTCCGCCGCCGCCATCGGCAAGCGTGCCCGGAATCATTGACTGCTGCTGCAGAAGCTCATGGCTATTGCCGTCGCCGCCGCCGCCGCCGCCTCCACAACCGGCGGCGACCTGATGATGCTGGTGGTGGCCGTGAGCATGTTGCTGAATTAATGAATCAAACCAAATCAATTAAACACAAGCTTAATTGTATATATATATTAGCTAGAGATCGACAAGAGAAGCATCTAGCTAGCAAGAAAGATGGAAGAAGAAGACGATTATTTGGGCAGTAAGTATATACCAAGACAGTGCTCCGGATCGGAATATTGAGCTAGCCCTAGCAAGTATTCTCACATCTCTTTAAATTTTTCTTTTCCAAATTTTAATATATATATATCGCCACAACTTTGTAGCTTTTATTTGTGCTCTTGCGCAAAAGAGAATGAATAAAATCTCTTGACGGAAAAGAAAGAGAAAGAAAGAAAGAAAGGGGATGAGCTAGGAAGAAGATGATGACTGGAAATTGATTATTACCTGCTGCTGCTGCTGGTTGTGGTTGTTGTTGTTGTTATCATTCCAGCTCGAGGAATCCAGGAAGGCAGGGGGGAAGATCATGGTGGTGGGTAGCAAGTGATGCTGAGCTGAGCTGAGCTGAGGTCTGGTGACTCTGGAGAGAAGATAGAGAATTAAAGTGCTAGGGTTTGGCAAGGCCTTGTGTTTTTCTTTTCTCTCTCTCCCTAGCTGCTGATGCCTGATTGCTTTCCCTTCTCTTCTGCAGCTATAGCTAGCTACCTTGTATTTTGTTTGTGGTGTATGTGGCCAAAGTTGGAGAGATA
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| CDS seq | ATGATCTTCCCCCCTGCCTTCCTGGATTCCTCGAGCTGGAATGATAACAACAACAACAACCACAACCAGCAGCAGCAGCAGCAACATGCTCACGGCCACCACCAGCATCATCAGGTCGCCGCCGGTTGTGGAGGCGGCGGCGGCGGCGGCGACGGCAATAGCCATGAGCTTCTGCAGCAGCAGTCAATGATTCCGGGCACGCTTGCCGATGGCGGCGGCGGAGGCGGCGCGGTGGGGCCGGCGAAGCCGATGTCGATGTCGGAGAGGGCGCGGCTGGCGAGGATCCCGCTGCCGGAGCCGGGGCTCAAGTGCCCGCGCTGCGACTCCACCAACACCAAGTTCTGCTACTTCAACAACTACTCCCTCTCCCAGCCCCGCCACTTCTGCCGCGCCTGCCGCCGCTACTGGACCCGCGGCGGCGCGCTCCGCAACGTCCCCGTCGGCGGCGGCTACCGCCGCCACGCCAAGCGCGCCAAGCCCAAGCCGGCGTCCGCGGCGGGCTCCGCCTCAGCCGCCACCACCACCGCCGGCTCGACGCCAGCGGGGTCGACGACGACGACGACGACGTCCTCCACCTGCGCCACGCCCAACGCGCCCGCCCTCCCGGCGATGCTGGGCGGCAACCTCTCCATCCTGCCGCCGCTGCTCCGCCTCGCCGACTTCGACGCCATGAGCCTCGGCTCCACCTTCTCTGGCATGGCGGCGGCCGCCGGCAAGCCACCGCCCGTCGACGCGGCCGGCTGCTACTCCGTCGGCGCCGCCACCGGCCTCGAGCAATGGAGACTACAGCAGATGCAGAGCTTCCCGTTCTTCCACGCCATGGATCACCAGGCGGCGATGGCGGCGCCACCGCCGGCAATGGCAATGCCGGGGATGTTCCAGCTAGGCCTAGACGGCGACGGCCATGGCAGCGGCGGCGGCGAAGACGGTGGAGAGCTCCACCATGCGATGCCATCATCGAAGAGAGAAGGCTACCCAAGGGGCATGTATGGCGATCATCACCTCGCTGGAGGATACACCTCCTACTCCAGTGCAACCACAGGTAACCATCTCTTGTAA
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| Protein seq | MIFPPAFLDSSSWNDNNNNNHNQQQQQQHAHGHHQHHQVAAGCGGGGGGGDGNSHELLQQQSMIPGTLADGGGGGGAVGPAKPMSMSERARLARIPLPEPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKRAKPKPASAAGSASAATTTAGSTPAGSTTTTTTSSTCATPNAPALPAMLGGNLSILPPLLRLADFDAMSLGSTFSGMAAAAGKPPPVDAAGCYSVGAATGLEQWRLQQMQSFPFFHAMDHQAAMAAPPPAMAMPGMFQLGLDGDGHGSGGGEDGGELHHAMPSSKREGYPRGMYGDHHLAGGYTSYSSATTGNHLL |
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| Function | Dof zinc finger protein DOF3.6 [UniProtKB/Swiss-Prot:Q9M2U1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g02150 | LOC_Os05g02150.1 | Chr05 | 658106 | 660255 | - | MSU_osa1r7 | ||
| CDS seq | ATGATCTTCCCCCCTGCCTTCCTGGATTCCTCGAGCTGGAATGATAACAACAACAACAACCACAACCAGCAGCAGCAGCAGCAACATGCTCACGGCCACCACCAGCATCATCAGGTCGCCGCCGGTTGTGGAGGCGGCGGCGGCGGCGGCGACGGCAATAGCCATGAGCTTCTGCAGCAGCAGTCAATGATTCCGGGCACGCTTGCCGATGGCGGCGGCGGAGGCGGCGCGGTGGGGCCGGCGAAGCCGATGTCGATGTCGGAGAGGGCGCGGCTGGCGAGGATCCCGCTGCCGGAGCCGGGGCTCAAGTGCCCGCGCTGCGACTCCACCAACACCAAGTTCTGCTACTTCAACAACTACTCCCTCTCCCAGCCCCGCCACTTCTGCCGCGCCTGCCGCCGCTACTGGACCCGCGGCGGCGCGCTCCGCAACGTCCCCGTCGGCGGCGGCTACCGCCGCCACGCCAAGCGCGCCAAGCCCAAGCCGGCGTCCGCGGCGGGCTCCGCCTCAGCCGCCACCACCACCGCCGGCTCGACGCCAGCGGGGTCGACGACGACGACGACGACGTCCTCCACCTGCGCCACGCCCAACGCGCCCGCCCTCCCGGCGATGCTGGGCGGCAACCTCTCCATCCTGCCGCCGCTGCTCCGCCTCGCCGACTTCGACGCCATGAGCCTCGGCTCCACCTTCTCTGGCATGGCGGCGGCCGCCGGCAAGCCACCGCCCGTCGACGCGGCCGGCTGCTACTCCGTCGGCGCCGCCACCGGCCTCGAGCAATGGAGACTACAGCAGATGCAGAGCTTCCCGTTCTTCCACGCCATGGATCACCAGGCGGCGATGGCGGCGCCACCGCCGGCAATGGCAATGCCGGGGATGTTCCAGCTAGGCCTAGACGGCGACGGCCATGGCAGCGGCGGCGGCGAAGACGGTGGAGAGCTCCACCATGCGATGCCATCATCGAAGAGAGAAGGCTACCCAAGGGGCATGTATGGCGATCATCACCTCGCTGGAGGATACACCTCCTACTCCAGTGCAACCACAGGTAACCATCTCTTGTAA
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| Protein seq | MIFPPAFLDSSSWNDNNNNNHNQQQQQQHAHGHHQHHQVAAGCGGGGGGGDGNSHELLQQQSMIPGTLADGGGGGGAVGPAKPMSMSERARLARIPLPEPGLKCPRCDSTNTKFCYFNNYSLSQPRHFCRACRRYWTRGGALRNVPVGGGYRRHAKRAKPKPASAAGSASAATTTAGSTPAGSTTTTTTSSTCATPNAPALPAMLGGNLSILPPLLRLADFDAMSLGSTFSGMAAAAGKPPPVDAAGCYSVGAATGLEQWRLQQMQSFPFFHAMDHQAAMAAPPPAMAMPGMFQLGLDGDGHGSGGGEDGGELHHAMPSSKREGYPRGMYGDHHLAGGYTSYSSATTGNHLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.259178 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0112200 | RBH | 0.0 | 0.0 | 1.178506 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g16850 | RBH | 0.0 | 0.0 | 0.212769 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0112200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0000920 | RBH | 0.000000 | 0.000000 | 0.356721 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0000910 | RBH | 0.0 | 1.201571 | 0.357651 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000970 | RBH | 0.0 | 0.0 | 1.454140 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000890 | RBH | 0.040774 | 0.067452 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0000880 | RBH | 0.0 | 0.0 | 1.601332 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0010400 | RBH | 0.855581 | 2.046679 | 4.6553615 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0000900 | RBH | 0.0 | 0.000000 | 0.068584 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0010700 | RBH | 1.231358 | 2.556857 | 9.6250545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000920 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000860 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0000920 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0000900 | RBH | 0.000000 | 0.541639 | 0.130578 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000910 | RBH | 0.0 | 1.878954 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G000850 | RBH | 0.0 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0000950 | RBH | 0.0 | 6.618821 | 1.553848 |
