Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os05g02080 | OGI:08000190 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr05:612964-619232 | ||||||||
| Gene Symbol | RPA1C, RPA1c, OsRPA1c | ||||||||||
| DNA seq | ATGCCGGCGCCGCTCCACGGACCTGGCAGGGGGGTGGCTGGTGGCGGCGATGGTGGCGGATGTGGCGGCGACGAAGTTGGCGACGAAGGCGGCGGACTGCGGCGCGTGCCGCGACGCCAGCCCTCGTCAAGAACCTCGCCGCCACGAGGGAGGCGCGTCTCCCGTCAATTGTATGCCGTGCCCGTGACGCCTTCCTCCATGGCGCCGGCGACCCGCACTGCGCGCTGCACCTTCAGGTCTGCGCCACCCGGCCGGTCTGGACGGCTGGCAGCTGGCGACGATGGCGGCTGGACGGGGGTGGTGGTGGCGGTGGCGATGGCGATGGTGGCTGGCGGTGGCGGCTGGCGACGGTGGTGGCTGTGGCGCTGGCGGTGGCGGCTGTCGACGGTGGTGCAAGGCCATCATCCGGGGCTGACGGTGCGTTGTCGTCGGCAGCGGCATGTGGAGGCGGGGAAGGAGGAGTTCGGGTGCGGGCGCGCTGTCGAGAACTGTGGGCGGTGGCCTTGGCCGAATTTCTGAAGGGACAATGTTGTTGACCGACAAAGATCCTTCTTGTGTGGATTGGTGGTGTGGTTTTGGACAGGGAATCGCGGGCGAAAGCCTTGTCGAGCCGTTTGGCCGGCTAACGACGGCGACGCCGTTTGGCGTCGTTCCCCTCCTTGGAGGCGTCGTTTTAGATTACCCCTCTCCTTTCCTAACCATATTTTCCGGGTGAAAACCTTGCTTCGTTCCGAACGAGCGGTGGCGGCGATCCACATCTCATCCTCCTTGGGGGCACCGCTTTGGAGAAACCTCTTCGTGCAAGGATTGTCTAAGGGTCTATGTATTGGCTTCGAACTTCAGTCTTAGGCTTTGACGAGGCATTCTAGCTCCACATTTTGTTTTGCTTTTCTTAGTTTGGGTCCTCTCTTTTCCTGTTTAGTGTGTTCAACTTGTCTTGAACTACACTCTCTTCTGGAGTGGAACTTTGTAATAATTGGCTGTAGCTCTTTTTGAGCAAAGACCGAGATATTATATTCCATTATCTAGAAAACAAACGCATCAATACTTCTCTTTTACTTGGTATATGTTTGATCTTGAAGTGTTGGAATTTACCTTTCATTGTCTACAAACGCCGTAAAATCTATCTATTATATACTAAAAGTCCATTAAACTCCCTACAAACGCTCTTAAGCTGCCACGTGTCTCCCTCAAAACACTCTCAACTTGCCACGTGGCGTAACGAGAGGAATTCAGCACCTCGTAGGGCCCGCACATTATTTCCATAAATATATGTACGTGTACACAAGGCAAGATTTGAAATCTATCTAAAAGCAAAACATGTACTTGTCGTGAACGAACATAGATTAGTTACATATTTGTGTGTGAGAGGCAATATTCCAAATCTCTCAAAGCAAAACATTCCAAATCTCAAAAAGCAAAATTTAGATCACTAGGAAAGATTATTAATTGCAACAAGGATTAGTTCCATATACATGAGACAATATTCGTAAGGCTTGCATGCATATATATACACCCCGCCAGCATGCGACATTAGTCGATTCCGGAAGAAGTCGATTCCGACGACGGAGCAGAAGAAGTCGATTCCGGCGGACGGAGCAGAAGAAGTCTGCGGCACCTTGCGAATCATCTTTGGCATAAGAAGGTATATCACGCACCCACAAAAGAACACAATCATGACATCATCTAATCATGATCTTGCAGCTAGGAAATAACATATGCATCTATACAGTTTTGTCATCATATTTTCAGCAGAAGAAACTAACATTGCACCTACAAAAGAACACAATTACGATATCCTGTATTAGTTAGAGGTACATTATGTTGCATCTATGTATACAATTTTGTCAATTTTTTTTCCAGCACAAAAAAGTAACCTTGCACCTATCAAAGAACACAATTATGAGAGTTTGTATTAATTAGTTCTATAAAATAACATAAACATGTATACGACTCTCTGTCAAATTTGTTTAGTAACTATATGCAGTACTACTCATTTGCAGATAACATGGCACCTAGCAATTTGATTACTGCATTAACACCAAAGAACGATAGGTGGAGAATCAAAGTAAAAGTTATTAGGCTATGGGATGCGGTTAATCCTACAATGGTTGATGAGTTCTATGGTATACAGATGATTGTACTAGATGCAGAGGTATGATTGTTGTAAACATGTGATTTAATATATTGTTCTATTATGTAAATACTATTTTTTTGGTGCAGGGCAACTCAATACATGTCTCTATCTCAAAGCAATTGGCGAACCACTTCAGGCCAAAAATTAAGATTAACTCAATATATACTTTTAAAAATTTCAAAGTTATGGAACATGATAAATACCGTGTCCTAAAAAACAATCTGAAAATCCTTTTTTATCATGATACCATAGTAAAAGAGGTAAAATCAAAAAGACAATGTTTCTTGGACTATTACTTCGAGTTTACAGACAGGAAAACATTAAGGAGTAGGTTGAATAAAGATCAACAGTTATCAGGTATGTGCATAATCTTACTTCTTTTAAACATTGTTATTTGTACTAAAGACCTGTTTGTATTTAGATGTGATTGGCTTACTTAGCGGGATGAAGCCGATCGAGCAAAGAATGCTAGGAAAAAACACAAGCAGGGAGAGGGTTTGCAACATGCGTGAAATTGAACTCCTTTTATTAGAGTAAGATTGTTGTCTGCAAATTTAAACCAGCACTAATACTTTCTATGTGGTATATTTTACATGACTTTATTGCATTTGTAGGGGAGAAAAAGTTAAAATTACTCTATGGGGAGATATTTTAGCAAATATGGTTGACGACGATTTGCTTGGGAAGCAAACTGTGTTCATCGCCACTGGACTTCTGGTTAAAGAATATGAAAGTGAGGATGTTATTTTTTTCTAATTTAACGTACTTATAGTTTTAGTAAACTAACGACATTGATCATTTAGAATTATTATCATTTGGAGTAACAAGTTCAACAGAAGTTTTTTTGGATATGGAAATTCCTGCAAGCATGGAAATATTGAGCAGGTGTGCAGTAGTAGCATTTAAATTCATATATATTTGTTGATTTGTCTAAAATTATCTGATGGATTATATTGCATTTTATTTATAGGCATAATGCTGAAAAGGTTTTGCCCACAATGATTGAAGTGGACGCAAGCACTCAAGGAACCATTGAAGAGCAAATGTTCTACAATAGAAAGACATTGAAAGAAATAACAGAATTGCGATATAGTAATATACAACAGAAGGTACATATCCATTCCTATGTTACGTTTATTTTTCATTTGTGTATTTAATGTTGGGAAAAATCTACTTGATGGCTGATGTAATGAGCATTACCTAAATTAAGTGGTACGTTTAGTCGTGAAGTCATCTTTAGTCACTCTTTCAAGCTGATTAGTTAACCAACATTAATTTGTTTTTTATTTAGGAATTTATATGCACAGTCAAAGCTAAAATTGAGGAGATTAAATCAAGAAATTGGTGGTATATGTCTTGCGATAAGTGCTTTTGTGGAACAAGAAAGGAATCAAATGTATACATTTGCAATTCATGCGGAAAGGAAGCAGTGAACCCAAAACCACGGTAAGCATGCTCTTCAAATTTTATTTGACATATTGTAGCAGGTATATTTACCATTAACGGCACATTGTACCAGGTATGTAATAAACCTTGAGATAAGTGACCACACTACTAGGACGACATGTACAATATTTAATGAGGAAGCAGAAAGAATATTTGGTCATAAGTCTGTGTCCACCATGCTGGAGGAACAGAATGGACAAATTGATATGATTCCTGATACAATACGTCAGATATGTGGAAGAATATTGATATTCAGATTGAAGTTGACTAAAAGGAATTTAGAAGAGTGTAAGGAAGACTACAAAGTGAACTACACTTTTACACCTAATGAAAAGCTTGAGATGAATTATGTAAATGACAAGGCAGAAGAGGTATGACTATTTGCATTATTCTTTTTTATACATGTTATAGATCTTATATTACAATATAAATATTAATTTGCAGTCAATGTTGAAGTACAACGATGATTATGGCTTCACTGATTTGAAAAAAATATTTTTGTAATGCATATGATATATATATAATTATTTATTGGATGTTCTGTAGTTTGGGCAGCACAATTTTCAGGTAAAAGAAGAGCCAAAAAATGAAAGTAGTGATGATTATGAAATGAACAATCATCGCAAAACAAAGAAAGAGAGATCAAACATGAGATCTACAAAAAGATCAAACAAGGTATGTATAATTGCTTTCTTACATAACAATTCGTAAAGTTGTTTATAGTAGTACACTAATAATGATGTTTTATAGGAACCATACATTACCGATTCTGATGGGAAAACAAATGAAAAGGCAATCACAATCGATGATGATTCCGAAGAATCACTTGATGATTATTTTGATGAAGAATACAATAAAAAGGTTACCCAGGAGAGTACAAAGACAAATCCTTCTAAAAGAAGAGTTACAAGACGCTTTAAAATAGCTAACAAGGTACTTCATTTATTTACTTTCCAAATTCACTCAATTTAGTTTTCACATAAATTATTTACCATTTCAATATGGCACTATGATATAGGCTAAGAAAGATCTTATATTACAATATAAATATTAATTTGCAGTCAATGTTGAAGTGCAATGATGATTATGGCTTCACTGATTTGCAAAAATCAGAAGATGAGGTAATATATAACAAATAAAAAATATTTTTACAATATATATTATATATATAATTATTTATTGGATGTTCTGTAGTTTGGGCAGCACAATTTTCAGATAAAAGAAGAGCCAAAAAATGAAAGTAGTGATGATTATGAAATGAACAATCATCGCAAAACAAAGAAAGAGAGATCAAACATGAGATGTACAAAAAGATCAAACAAGGTATGTATAATTGCTTTCTTATATAACAATTCGTAAAGTTATTTATAGTACTACACTAATAATGATGTTTTATAGGAACCATACATTACCGATTTTGATGGGAAAACAAATGAAAAGGCAATTACAATCGATGATGATTGTGAAGAATCACTTGATGATTATTTTGATGAAGAATACAATGAAAAGGTTACACAGGAGAGTACAAAGACGAATCCTTCTAAAAGAAGAGTTACAAGATGTTTTAAAACATCTAACAAGGTACTTCATTTATTTTACTTTCCAAATTCACTCAATTTAGTTTTCACATAAATTATTTACCATTTCAATATGGCACTATGATATAGGCTAAGAAAGGAAAATGTTCTGAAATGAAAACTCAGAGAAATAAGGTACAATTCTTACTTTTCTTTCATATACAAAACGATTTGTCAAACTATTACTGACATGTTATATACAATTGATGGGTATTAATAGGAACCATATACTACTGATTGTGAGAAGATAGCAAATGACAAACCAATTTCGCTTGATGATGATTTTGATGAAGAATATAATAAAAATATGGTCATGGCGGACACCAGTACTTCTAAAAGAAAAGTCAGACACTACATAGGACAAACTAACATTGTACTTCATTGAGTTTTACTTTCTATTTAATGTTACCTTTCATGTTTGTCCATTAATGTCAATATGCTATTGTGCAGGTAAGGGGAAAAGGTTGTGGAAAGAAGAGTACAAATATGGGAACTTGCACAAAAAGTGCAATTGAAAATACAATTCAAGATGATGAAGTATTTGATATATTTGTTAAATAAATCATGTATTTTAACATAAAACTTTTTTAATTAACTAACTAAGAACACAAAATTTAGGTGCATGACGGAAAAATTGCTTCAGGAACTGCTAAAAGACCATCAAGGAAATTTATAATTTCAGATAGTGAGGTACTGCATGAGACAATTTATCAAGTTATTAATTAATATATTTTTTTTTGTAACAACTAATTTTTTTCCCATAGGATGAGCACAGCAGTAATACAAAGGTGACTGGGGACAGCACCAGCTGTAATAGTAGTAAGGAAGATATAAACAAAGGTCGATGCAATTATAATATTGAGAACATTAAAGTTCACATGAATGAGCAGTCCAGTCGATGCAGATCAACAAGGATTAGAAGACCACCCACCCGATACTCATATTAGGTACAACATATTACTTATGGGAAAATGTTGGTTGCTTTAGATTTGGTTTGATTAGTAAATTATAATAATATGGTCTTTCGTCTGCAGGTAATTTATCGTCAAGAAGGCCCAAAAGAACCAATTAAAAGGAGGGTTCAGCCAATACTTTTTATTGAAGAATAG
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| CDS seq | ATGCCGGCGCCGCTCCACGGACCTGGCAGGGGGGTGGCTGGTGGCGGCGATGGTGGCGGATGTGGCGGCGACGAAGTTGGCGACGAAGGCGGCGGACTGCGGCGCGTGCCGCGACGCCAGCCCTCGTCAAGAACCTCGCCGCCACGAGGGAGGCGCGTCTCCCGTCAATTGTATGCCGTGCCCGTGACGCCTTCCTCCATGGCGCCGGCGACCCGCACTGCGCGCTGCACCTTCAGCTGGCGACGATGGCGGCTGGACGGGGGTGGTGGTGGCGGTGGCGATGGCGATGGTGGCTGGCGGTGGCGGCTGGCGACGGTGGTGGCTGTGGCGCTGGCGGTGGCGGCTGTCGACGGTGGTGCAAGGCCATCATCCGGGGCTGACGCATGCGACATTAGTCGATTCCGGAAGAAGTCGATTCCGACGACGGAGCAGAAGAAGTCGATTCCGGCGGACGGAGCAGAAGAAGTCTGCGGCACCTTGCGAATCATCTTTGGCATAAGAAGTAACTATATGCAGTACTACTCATTTGCAGATAACATGGCACCTAGCAATTTGATTACTGCATTAACACCAAAGAACGATAGGTGGAGAATCAAAGTAAAAGTTATTAGGCTATGGGATGCGGTTAATCCTACAATGGTTGATGAGTTCTATGGTATACAGATGATTGTACTAGATGCAGAGGGCAACTCAATACATGTCTCTATCTCAAAGCAATTGGCGAACCACTTCAGGCCAAAAATTAAGATTAACTCAATATATACTTTTAAAAATTTCAAAGTTATGGAACATGATAAATACCGTGTCCTAAAAAACAATCTGAAAATCCTTTTTTATCATGATACCATAGTAAAAGAGACCTGTTTGTATTTAGATGTGATTGGCTTACTTAGCGGGATGAAGCCGATCGAGCAAAGAATGCTAGGAAAAAACACAAGCAGGGAGAGGGTTTGCAACATGCGTGAAATTGAACTCCTTTTATTAGAGGGAGAAAAAGTTAAAATTACTCTATGGGGAGATATTTTAGCAAATATGGTTGACGACGATTTGCTTGGGAAGCAAACTGTGTTCATCGCCACTGGACTTCTGGTTAAAGAATATGAAAAATTATTATCATTTGGAGTAACAAGTTCAACAGAAGTTTTTTTGGATATGGAAATTCCTGCAAGCATGGAAATATTGAGCAGGCATAATGCTGAAAAGGTTTTGCCCACAATGATTGAAGTGGACGCAAGCACTCAAGGAACCATTGAAGAGCAAATGTTCTACAATAGAAAGACATTGAAAGAAATAACAGAATTGCGATATAGTAATATACAACAGAAGGAATTTATATGCACAGTCAAAGCTAAAATTGAGGAGATTAAATCAAGAAATTGGTGGTATATGTCTTGCGATAAGTGCTTTTGTGGAACAAGAAAGGAATCAAATGTATACATTTGCAATTCATGCGGAAAGGAAGCAGTGAACCCAAAACCACGGTATGTAATAAACCTTGAGATAAGTGACCACACTACTAGGACGACATGTACAATATTTAATGAGGAAGCAGAAAGAATATTTGGTCATAAGTCTGTGTCCACCATGCTGGAGGAACAGAATGGACAAATTGATATGATTCCTGATACAATACGTCAGATATGTGGAAGAATATTGATATTCAGATTGAAGTTGACTAAAAGGAATTTAGAAGAGTGTAAGGAAGACTACAAAGTGAACTACACTTTTACACCTAATGAAAAGCTTGAGATGAATTATGTAAATGACAAGGCAGAAGAGTTTGGGCAGCACAATTTTCAGGTAAAAGAAGAGCCAAAAAATGAAAGTAGTGATGATTATGAAATGAACAATCATCGCAAAACAAAGAAAGAGAGATCAAACATGAGATCTACAAAAAGATCAAACAAGGAACCATACATTACCGATTCTGATGGGAAAACAAATGAAAAGGCAATCACAATCGATGATGATTCCGAAGAATCACTTGATGATTATTTTGATGAAGAATACAATAAAAAGGTTACCCAGGAGAGTACAAAGACAAATCCTTCTAAAAGAAGAGTTACAAGACGCTTTAAAATAGCTAACAAGTCAATGTTGAAGTGCAATGATGATTATGGCTTCACTGATTTGCAAAAATCAGAAGATGAGTTTGGGCAGCACAATTTTCAGATAAAAGAAGAGCCAAAAAATGAAAGTAGTGATGATTATGAAATGAACAATCATCGCAAAACAAAGAAAGAGAGATCAAACATGAGATGTACAAAAAGATCAAACAAGGAACCATACATTACCGATTTTGATGGGAAAACAAATGAAAAGGCAATTACAATCGATGATGATTGTGAAGAATCACTTGATGATTATTTTGATGAAGAATACAATGAAAAGGTTACACAGGAGAGTACAAAGACGAATCCTTCTAAAAGAAGAGTTACAAGATGTTTTAAAACATCTAACAAGGCTAAGAAAGGAAAATGTTCTGAAATGAAAACTCAGAGAAATAAGGAACCATATACTACTGATTGTGAGAAGATAGCAAATGACAAACCAATTTCGCTTGATGATGATTTTGATGAAGAATATAATAAAAATATGGTAAGGGGAAAAGGTTGTGGAAAGAAGAGTACAAATATGGGAACTTGCACAAAAAGTGCAATTGAAAATACAATTCAAGATGATGAAGTGCATGACGGAAAAATTGCTTCAGGAACTGCTAAAAGACCATCAAGGAAATTTATAATTTCAGATAGTGAGGTAATTTATCGTCAAGAAGGCCCAAAAGAACCAATTAAAAGGAGGGTTCAGCCAATACTTTTTATTGAAGAATAG
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| Protein seq | MPAPLHGPGRGVAGGGDGGGCGGDEVGDEGGGLRRVPRRQPSSRTSPPRGRRVSRQLYAVPVTPSSMAPATRTARCTFSWRRWRLDGGGGGGGDGDGGWRWRLATVVAVALAVAAVDGGARPSSGADACDISRFRKKSIPTTEQKKSIPADGAEEVCGTLRIIFGIRSNYMQYYSFADNMAPSNLITALTPKNDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQLANHFRPKIKINSIYTFKNFKVMEHDKYRVLKNNLKILFYHDTIVKETCLYLDVIGLLSGMKPIEQRMLGKNTSRERVCNMREIELLLLEGEKVKITLWGDILANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASMEILSRHNAEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKIEEIKSRNWWYMSCDKCFCGTRKESNVYICNSCGKEAVNPKPRYVINLEISDHTTRTTCTIFNEEAERIFGHKSVSTMLEEQNGQIDMIPDTIRQICGRILIFRLKLTKRNLEECKEDYKVNYTFTPNEKLEMNYVNDKAEEFGQHNFQVKEEPKNESSDDYEMNNHRKTKKERSNMRSTKRSNKEPYITDSDGKTNEKAITIDDDSEESLDDYFDEEYNKKVTQESTKTNPSKRRVTRRFKIANKSMLKCNDDYGFTDLQKSEDEFGQHNFQIKEEPKNESSDDYEMNNHRKTKKERSNMRCTKRSNKEPYITDFDGKTNEKAITIDDDCEESLDDYFDEEYNEKVTQESTKTNPSKRRVTRCFKTSNKAKKGKCSEMKTQRNKEPYTTDCEKIANDKPISLDDDFDEEYNKNMVRGKGCGKKSTNMGTCTKSAIENTIQDDEVHDGKIASGTAKRPSRKFIISDSEVIYRQEGPKEPIKRRVQPILFIEE |
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| Function | Replication protein A 70 kDa DNA-binding subunit C [UniProtKB/Swiss-Prot:Q65XV7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os05g02080 | LOC_Os05g02080.1 | Chr05 | 612964 | 619232 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCGGCGCCGCTCCACGGACCTGGCAGGGGGGTGGCTGGTGGCGGCGATGGTGGCGGATGTGGCGGCGACGAAGTTGGCGACGAAGGCGGCGGACTGCGGCGCGTGCCGCGACGCCAGCCCTCGTCAAGAACCTCGCCGCCACGAGGGAGGCGCGTCTCCCGTCAATTGTATGCCGTGCCCGTGACGCCTTCCTCCATGGCGCCGGCGACCCGCACTGCGCGCTGCACCTTCAGCTGGCGACGATGGCGGCTGGACGGGGGTGGTGGTGGCGGTGGCGATGGCGATGGTGGCTGGCGGTGGCGGCTGGCGACGGTGGTGGCTGTGGCGCTGGCGGTGGCGGCTGTCGACGGTGGTGCAAGGCCATCATCCGGGGCTGACGCATGCGACATTAGTCGATTCCGGAAGAAGTCGATTCCGACGACGGAGCAGAAGAAGTCGATTCCGGCGGACGGAGCAGAAGAAGTCTGCGGCACCTTGCGAATCATCTTTGGCATAAGAAGTAACTATATGCAGTACTACTCATTTGCAGATAACATGGCACCTAGCAATTTGATTACTGCATTAACACCAAAGAACGATAGGTGGAGAATCAAAGTAAAAGTTATTAGGCTATGGGATGCGGTTAATCCTACAATGGTTGATGAGTTCTATGGTATACAGATGATTGTACTAGATGCAGAGGGCAACTCAATACATGTCTCTATCTCAAAGCAATTGGCGAACCACTTCAGGCCAAAAATTAAGATTAACTCAATATATACTTTTAAAAATTTCAAAGTTATGGAACATGATAAATACCGTGTCCTAAAAAACAATCTGAAAATCCTTTTTTATCATGATACCATAGTAAAAGAGACCTGTTTGTATTTAGATGTGATTGGCTTACTTAGCGGGATGAAGCCGATCGAGCAAAGAATGCTAGGAAAAAACACAAGCAGGGAGAGGGTTTGCAACATGCGTGAAATTGAACTCCTTTTATTAGAGGGAGAAAAAGTTAAAATTACTCTATGGGGAGATATTTTAGCAAATATGGTTGACGACGATTTGCTTGGGAAGCAAACTGTGTTCATCGCCACTGGACTTCTGGTTAAAGAATATGAAAAATTATTATCATTTGGAGTAACAAGTTCAACAGAAGTTTTTTTGGATATGGAAATTCCTGCAAGCATGGAAATATTGAGCAGGCATAATGCTGAAAAGGTTTTGCCCACAATGATTGAAGTGGACGCAAGCACTCAAGGAACCATTGAAGAGCAAATGTTCTACAATAGAAAGACATTGAAAGAAATAACAGAATTGCGATATAGTAATATACAACAGAAGGAATTTATATGCACAGTCAAAGCTAAAATTGAGGAGATTAAATCAAGAAATTGGTGGTATATGTCTTGCGATAAGTGCTTTTGTGGAACAAGAAAGGAATCAAATGTATACATTTGCAATTCATGCGGAAAGGAAGCAGTGAACCCAAAACCACGGTATGTAATAAACCTTGAGATAAGTGACCACACTACTAGGACGACATGTACAATATTTAATGAGGAAGCAGAAAGAATATTTGGTCATAAGTCTGTGTCCACCATGCTGGAGGAACAGAATGGACAAATTGATATGATTCCTGATACAATACGTCAGATATGTGGAAGAATATTGATATTCAGATTGAAGTTGACTAAAAGGAATTTAGAAGAGTGTAAGGAAGACTACAAAGTGAACTACACTTTTACACCTAATGAAAAGCTTGAGATGAATTATGTAAATGACAAGGCAGAAGAGTTTGGGCAGCACAATTTTCAGGTAAAAGAAGAGCCAAAAAATGAAAGTAGTGATGATTATGAAATGAACAATCATCGCAAAACAAAGAAAGAGAGATCAAACATGAGATCTACAAAAAGATCAAACAAGGAACCATACATTACCGATTCTGATGGGAAAACAAATGAAAAGGCAATCACAATCGATGATGATTCCGAAGAATCACTTGATGATTATTTTGATGAAGAATACAATAAAAAGGTTACCCAGGAGAGTACAAAGACAAATCCTTCTAAAAGAAGAGTTACAAGACGCTTTAAAATAGCTAACAAGTCAATGTTGAAGTGCAATGATGATTATGGCTTCACTGATTTGCAAAAATCAGAAGATGAGTTTGGGCAGCACAATTTTCAGATAAAAGAAGAGCCAAAAAATGAAAGTAGTGATGATTATGAAATGAACAATCATCGCAAAACAAAGAAAGAGAGATCAAACATGAGATGTACAAAAAGATCAAACAAGGAACCATACATTACCGATTTTGATGGGAAAACAAATGAAAAGGCAATTACAATCGATGATGATTGTGAAGAATCACTTGATGATTATTTTGATGAAGAATACAATGAAAAGGTTACACAGGAGAGTACAAAGACGAATCCTTCTAAAAGAAGAGTTACAAGATGTTTTAAAACATCTAACAAGGCTAAGAAAGGAAAATGTTCTGAAATGAAAACTCAGAGAAATAAGGAACCATATACTACTGATTGTGAGAAGATAGCAAATGACAAACCAATTTCGCTTGATGATGATTTTGATGAAGAATATAATAAAAATATGGTAAGGGGAAAAGGTTGTGGAAAGAAGAGTACAAATATGGGAACTTGCACAAAAAGTGCAATTGAAAATACAATTCAAGATGATGAAGTGCATGACGGAAAAATTGCTTCAGGAACTGCTAAAAGACCATCAAGGAAATTTATAATTTCAGATAGTGAGGTAATTTATCGTCAAGAAGGCCCAAAAGAACCAATTAAAAGGAGGGTTCAGCCAATACTTTTTATTGAAGAATAG
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| Protein seq | MPAPLHGPGRGVAGGGDGGGCGGDEVGDEGGGLRRVPRRQPSSRTSPPRGRRVSRQLYAVPVTPSSMAPATRTARCTFSWRRWRLDGGGGGGGDGDGGWRWRLATVVAVALAVAAVDGGARPSSGADACDISRFRKKSIPTTEQKKSIPADGAEEVCGTLRIIFGIRSNYMQYYSFADNMAPSNLITALTPKNDRWRIKVKVIRLWDAVNPTMVDEFYGIQMIVLDAEGNSIHVSISKQLANHFRPKIKINSIYTFKNFKVMEHDKYRVLKNNLKILFYHDTIVKETCLYLDVIGLLSGMKPIEQRMLGKNTSRERVCNMREIELLLLEGEKVKITLWGDILANMVDDDLLGKQTVFIATGLLVKEYEKLLSFGVTSSTEVFLDMEIPASMEILSRHNAEKVLPTMIEVDASTQGTIEEQMFYNRKTLKEITELRYSNIQQKEFICTVKAKIEEIKSRNWWYMSCDKCFCGTRKESNVYICNSCGKEAVNPKPRYVINLEISDHTTRTTCTIFNEEAERIFGHKSVSTMLEEQNGQIDMIPDTIRQICGRILIFRLKLTKRNLEECKEDYKVNYTFTPNEKLEMNYVNDKAEEFGQHNFQVKEEPKNESSDDYEMNNHRKTKKERSNMRSTKRSNKEPYITDSDGKTNEKAITIDDDSEESLDDYFDEEYNKKVTQESTKTNPSKRRVTRRFKIANKSMLKCNDDYGFTDLQKSEDEFGQHNFQIKEEPKNESSDDYEMNNHRKTKKERSNMRCTKRSNKEPYITDFDGKTNEKAITIDDDCEESLDDYFDEEYNEKVTQESTKTNPSKRRVTRCFKTSNKAKKGKCSEMKTQRNKEPYTTDCEKIANDKPISLDDDFDEEYNKNMVRGKGCGKKSTNMGTCTKSAIENTIQDDEVHDGKIASGTAKRPSRKFIISDSEVIYRQEGPKEPIKRRVQPILFIEE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0111000 | SBH | 0.610717 | 0.394777 | 1.314970 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g73290 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0111000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0000830 | SBH | 0.000000 | 4.716577 | 1.826377 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0000830 | SBH | 0.0 | 0.0 | 1.077613 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0000900 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0000810 | SBH | 0.000000 | 0.164776 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0000800 | SBH | 0.709831 | 5.335914 | 2.870083 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0009800 | RBH | 0 | 0 | 0.0137105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0000820 | SBH | 0.094396 | 0.373423 | 0.080159 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0009700 | SBH | 2.8621395 | 2.243838 | 9.5373655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000840 | SBH | 0.0 | 0.092273 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0000770 | SBH | 0.0 | 2.516715 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0013290 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0000820 | SBH | 0.123007 | 0.556533 | 0.218740 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0000830 | SBH | 0.038395 | 2.696239 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004590 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004540 | RBH | 0.0 | 0.0 | 0.000000 |
