Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g58860 | OGI:04102690 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:35010940-35012452 | ||||||||
| Gene Symbol | OsNDR1 | ||||||||||
| DNA seq | TCTCTTTTCTTCAATTTTTTTTATAGAGAGAATCGAAAGGCAAGACGAGCAAAACACACAGGTGTACATATGAACATTTTTTTTAATTATTGATGTACTCACATTGGAATATAATTATTGCCAAATGCAAATCGAATTATGCAGACACTTCACGTCTACTCCCAGCTGTACGTCTATTATGCATCTTTTCAGAATACCCCAATTTTCCCTTTCACTCCAAGCTACACTAGCTCCAAACCAACTACGGTCTAAATTAAGAAGCTAGTACTATCATCGATCGGTTTTTCTTCATTGATATGAGATGATTGATTCCGGTGAGAAAAATTAAGCAAGAAGAAGAAGAGAAGCCGTGAAACTAATTAAAAAGAAGAAGAGAAGGAGGAGGAGGAAATGAAGAAAGAAGACACAGCTAGACATCGACGGCGCATGCAGCTGCTTGCTGGAAGCGGAAGTAGCCATCGCCGCCGCCGTAGTTGACGCCGTAGCTGCCCTTGCCGTCGTTGACGGTGAGGAGGGCGGGGCAGTTGACGCGGAGGTGGTAGTGGCCGGAGATCCAGGTGCCGACCTTCCATCGGACCCAGCCGTCGAGGCGGATGTCGACGAGGACGTAGCCGGCGGTCTCGTCCTGGGCGAGGGCGACGGCGAGGTTGGGGGGGAGGACGACGTGGTCGAGCGATTGGAGGAAGGGGGACCAGACGGACTGGTCGTAGTGGCCCTGGTACTCCACGGGGAGCCTCGTCGGCACCGTGATGGCCACGTCCTTGTACTGCGCGTACACGTCCACCTTGTCGTAGTAGACGCCCACGCGGCCGTTGTCGTTGCGCGCCGCCACCGTCGCCTGCATGGTGGTGAAGAGGTAGGCGGACGCCGGCGGCGTCACGTTGAGGCACAGCACGGACAGGTCCTGCAGGTAGAACCGCGGCTTGTGCGGCCGCAGCGCCAGCCACACCACCAGCACGATGAAGAGCGTCAGGAGCACCAGCGCCACCAGCGCCCAGCACAGCCGCCGGTGCACCTTCTCCTTCTCGCACTCGCACCCCTTGTGCCCCCCACAATCCTTGATCACCGACATCCCCTCTTTGCTCTCCTTGATCGATCGAAATGGCTGGGAGGAGGTCGCGGCAGCGGGTGGGGAGGGGGTTTATATATGAGCTCAGATGGTGGTGTGGCTCATGTACAGCAATGGCAGGTTGATTGATTGGAAGGAGGTGATCAGCATCGGCTGACAGTGTGAGCAGAGCAGGGTAGGTTCAGTTGTTGGTTGCTGCTGCTCACTTTTGGGTGGCTTACTAGACTTTGCACGGTCGCCTGCTGCTTAACTTAATTTCAGCTTTGTAAGCATGGTGTATGTCTCAAAGGGGTGGATTATGATGGTGGAGCTGGTGATCGATGGTGGTGAGTGGTAAGCTCCAAAAGAAGCTATGATTGATTGAAAGGTAATCAAGTTTTGTTAAGGACTCGGAGAAAACGCCTTTCGTCGATACAAAAAGTGAAAAGGAAGGATTTTGATTCT
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| CDS seq | ATGTCGGTGATCAAGGATTGTGGGGGGCACAAGGGGTGCGAGTGCGAGAAGGAGAAGGTGCACCGGCGGCTGTGCTGGGCGCTGGTGGCGCTGGTGCTCCTGACGCTCTTCATCGTGCTGGTGGTGTGGCTGGCGCTGCGGCCGCACAAGCCGCGGTTCTACCTGCAGGACCTGTCCGTGCTGTGCCTCAACGTGACGCCGCCGGCGTCCGCCTACCTCTTCACCACCATGCAGGCGACGGTGGCGGCGCGCAACGACAACGGCCGCGTGGGCGTCTACTACGACAAGGTGGACGTGTACGCGCAGTACAAGGACGTGGCCATCACGGTGCCGACGAGGCTCCCCGTGGAGTACCAGGGCCACTACGACCAGTCCGTCTGGTCCCCCTTCCTCCAATCGCTCGACCACGTCGTCCTCCCCCCCAACCTCGCCGTCGCCCTCGCCCAGGACGAGACCGCCGGCTACGTCCTCGTCGACATCCGCCTCGACGGCTGGGTCCGATGGAAGGTCGGCACCTGGATCTCCGGCCACTACCACCTCCGCGTCAACTGCCCCGCCCTCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCAAGCAGCTGCATGCGCCGTCGATGTCTAG
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| Protein seq | MSVIKDCGGHKGCECEKEKVHRRLCWALVALVLLTLFIVLVVWLALRPHKPRFYLQDLSVLCLNVTPPASAYLFTTMQATVAARNDNGRVGVYYDKVDVYAQYKDVAITVPTRLPVEYQGHYDQSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDGWVRWKVGTWISGHYHLRVNCPALLTVNDGKGSYGVNYGGGDGYFRFQQAAACAVDV |
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| Function | NDR1/HIN1-like protein 1 [UniProtKB/Swiss-Prot:Q9SRN0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g58860 | LOC_Os04g58860.1 | Chr04 | 35010940 | 35012452 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCGGTGATCAAGGATTGTGGGGGGCACAAGGGGTGCGAGTGCGAGAAGGAGAAGGTGCACCGGCGGCTGTGCTGGGCGCTGGTGGCGCTGGTGCTCCTGACGCTCTTCATCGTGCTGGTGGTGTGGCTGGCGCTGCGGCCGCACAAGCCGCGGTTCTACCTGCAGGACCTGTCCGTGCTGTGCCTCAACGTGACGCCGCCGGCGTCCGCCTACCTCTTCACCACCATGCAGGCGACGGTGGCGGCGCGCAACGACAACGGCCGCGTGGGCGTCTACTACGACAAGGTGGACGTGTACGCGCAGTACAAGGACGTGGCCATCACGGTGCCGACGAGGCTCCCCGTGGAGTACCAGGGCCACTACGACCAGTCCGTCTGGTCCCCCTTCCTCCAATCGCTCGACCACGTCGTCCTCCCCCCCAACCTCGCCGTCGCCCTCGCCCAGGACGAGACCGCCGGCTACGTCCTCGTCGACATCCGCCTCGACGGCTGGGTCCGATGGAAGGTCGGCACCTGGATCTCCGGCCACTACCACCTCCGCGTCAACTGCCCCGCCCTCCTCACCGTCAACGACGGCAAGGGCAGCTACGGCGTCAACTACGGCGGCGGCGATGGCTACTTCCGCTTCCAGCAAGCAGCTGCATGCGCCGTCGATGTCTAG
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| Protein seq | MSVIKDCGGHKGCECEKEKVHRRLCWALVALVLLTLFIVLVVWLALRPHKPRFYLQDLSVLCLNVTPPASAYLFTTMQATVAARNDNGRVGVYYDKVDVYAQYKDVAITVPTRLPVEYQGHYDQSVWSPFLQSLDHVVLPPNLAVALAQDETAGYVLVDIRLDGWVRWKVGTWISGHYHLRVNCPALLTVNDGKGSYGVNYGGGDGYFRFQQAAACAVDV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.222602 | 4.154771 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0685400 | RBH | 0.0 | 0.487586 | 23.414375 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g01220 | RBH | 1.968740 | 0.966122 | 5.134023 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0685400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031680 | RBH | 0.0 | 45.804981 | 14.073015 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0032470 | RBH | 0.086161 | 12.240009 | 1.822356 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0032030 | RBH | 0.0 | 41.899975 | 8.187518 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0031870 | RBH | 0.0 | 1.321574 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0032140 | RBH | 0.581555 | 25.195953 | 10.204762 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0553800 | RBH | 16.6313655 | 26.833373 | 5.4356705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030760 | RBH | 0.0 | 1.906811 | 0.608626 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0559700 | RBH | 19.0866045 | 14.8227275 | 3.3958105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031240 | RBH | 0.0 | 1.082637 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0031030 | RBH | 0.0 | 28.818354 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031170 | RBH | 0.0 | 50.110073 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0031740 | RBH | 0.0 | 1.759644 | 1.370678 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031740 | RBH | 0.0 | 34.869965 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031220 | RBH | 0.222382 | 22.477121 | 6.195656 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0030960 | RBH | 0.0 | 17.819490 | 4.119614 |
