Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g57910 | OGI:04101090 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:34501609-34503161 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAATTTGCCCTTCTCCGTTTTCGCTCCACCTCGCCGTCGGCAGGCTCTGGCACCACCCGTTCCACAGTGACAACATTGCGATGGTCTGTCTTGCAAACAAATTCAGTGGCGACTCGATGGCCATCCACGTAATGCTTCTTCTCGTACTCATCAGCACAAGGGTCTGAAAACGCCAGATCGTTGCCAATCTCTAGCTTTGGGGTGATCACCATCTGCTCGAGGGTCATGGAGCTGCGAAGGATGTGAAGTGCTAGCTCCACCTGGTCTTTGTGGCCAAAGAAACCACTGATGCGAACGCGTTTGAGATGAGCGTGCTGGTGTGGAGGACCAACAATCCTTAGCTCACCATCCTCTTCGCGATACGGTTGATGCCGGCAGTTCAGCATCCACATCTAATGGGGAAAAAGAAATATTGCATGCATTAAAACGTGGAGTTAGTACATGGATCAAGGCAATAATATTGTTTCTGAAATTCATGTGACCCAAAGGGTTGCCTTTGAGTGTTCACCTGTGATGCACCGATACGGCAGTTTGCCGCCGTTCCCGTATGGGATACGTATCCGATACGGCGATACGTGGGATACGCGAGCGATACGGTATCGGAGAAGTATCGCTGATTTGTTAGCCAAAAAAATAAAAAAAAATGAGCGATACGGCATCAATACATGGTCGATACTTCCCTCGATACGGCGCCCAGTATAAGGAATAAGTTCACTCCATGACCCTCAAATGTGATCGAAATCTAAACCATGACCCTAAACTACAAAACCAGATATCTCGACCCCTAAACTTCTAAAACCGGTGCAATTTGACTCCCTGAGCGGTTTTGCTGATGTGGCGCCACGTGGCGCCTACGTGGCAATATTGACCGAGTCTTTGTTACACGTGGCGTTGACGTGGCACCTACGTGGCAGTAGAAATAAAAAATATGCGTAGGACCCATTAGTCATTCACACAAAAAAAAATGTGGGCCCACTAGCATGTGGGGCCCACATGTCAGTCCTCCTTCCTCCTCCCTCACTCCCTTCTCTCTCTTTCTCTTCCCTTCTTCCCCTTCGCCGCCGCTCCCACCGCCACCGCCGCCGCTCCCTACCACCGGCGAGCTCCTGCCCCTCCCCCGCGCGCAGACAGCTGGCGAGCCCCTCCCCTGCGGGCGGACGGCCGGCGAGCCCCTCCCCCGTGTGCGGACGGCCGGCGAGCCCCTCCCCGCGCGCGGACGGCCGGCGAGCCCCACCCCGCTCGCGGACGGCCGGCGAGCGCCTCCCCCGTGCGCTATCGTCGTCGCCGCCGCCACGACGCCTCGGCGCATGGCCGCCTCCCCCGTGAGTTCCTCTACTGGGCCGCCTTCTCGTTGCCATCGTCGTCGACCCCCCACTCCCTCCGCACCTACTGCCTCCTCGTCCACCTCCTCTCCCGCACCGCCGCCGCCGGATGCCGACGCCGCTCGTTCTCGTTGTCCCAGCACGCCACCGGCCGAAGGGGAAGAAGGGGAGAGAAAGAGAGAGAAGGGAGAGAGGGAGGAGGAAGAAAGTCTGACATGTGGGCCCCACAT
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| CDS seq | ATGTGGGGCCCACATGTCAGACTTTCTTCCTCCTCCCTCTCTCCCTTCTCTCTCTTTCTCTCCCCTTCTTCCCCTTCGGCCGGTGGCGTGCTGGGACAACGAGAACGAGCGGCGTCGGCATCCGGCGGCGGCGGTGCGGGAGAGGAGGTGGACGAGGAGGCAATGTGGATGCTGAACTGCCGGCATCAACCGTATCGCGAAGAGGATGGTGAGCTAAGGATTGTTGGTCCTCCACACCAGCACGCTCATCTCAAACGCGTTCGCATCAGTGGTTTCTTTGGCCACAAAGACCAGGTGGAGCTAGCACTTCACATCCTTCGCAGCTCCATGACCCTCGAGCAGATGGTGATCACCCCAAAGCTAGAGATTGGCAACGATCTGGCGTTTTCAGACCCTTGTGCTGATGAGTACGAGAAGAAGCATTACGTGGATGGCCATCGAGTCGCCACTGAATTTGTTTGCAAGACAGACCATCGCAATGTTGTCACTGTGGAACGGGTGGTGCCAGAGCCTGCCGACGGCGAGGTGGAGCGAAAACGGAGAAGGGCAAATTAG
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| Protein seq | MWGPHVRLSSSSLSPFSLFLSPSSPSAGGVLGQRERAASASGGGGAGEEVDEEAMWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRISGFFGHKDQVELALHILRSSMTLEQMVITPKLEIGNDLAFSDPCADEYEKKHYVDGHRVATEFVCKTDHRNVVTVERVVPEPADGEVERKRRRAN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g57910 | LOC_Os04g57910.1 | Chr04 | 34501609 | 34503161 | - | MSU_osa1r7 | ||
| CDS seq | ATGTGGGGCCCACATGTCAGACTTTCTTCCTCCTCCCTCTCTCCCTTCTCTCTCTTTCTCTCCCCTTCTTCCCCTTCGGCCGGTGGCGTGCTGGGACAACGAGAACGAGCGGCGTCGGCATCCGGCGGCGGCGGTGCGGGAGAGGAGGTGGACGAGGAGGCAATGTGGATGCTGAACTGCCGGCATCAACCGTATCGCGAAGAGGATGGTGAGCTAAGGATTGTTGGTCCTCCACACCAGCACGCTCATCTCAAACGCGTTCGCATCAGTGGTTTCTTTGGCCACAAAGACCAGGTGGAGCTAGCACTTCACATCCTTCGCAGCTCCATGACCCTCGAGCAGATGGTGATCACCCCAAAGCTAGAGATTGGCAACGATCTGGCGTTTTCAGACCCTTGTGCTGATGAGTACGAGAAGAAGCATTACGTGGATGGCCATCGAGTCGCCACTGAATTTGTTTGCAAGACAGACCATCGCAATGTTGTCACTGTGGAACGGGTGGTGCCAGAGCCTGCCGACGGCGAGGTGGAGCGAAAACGGAGAAGGGCAAATTAG
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| Protein seq | MWGPHVRLSSSSLSPFSLFLSPSSPSAGGVLGQRERAASASGGGGAGEEVDEEAMWMLNCRHQPYREEDGELRIVGPPHQHAHLKRVRISGFFGHKDQVELALHILRSSMTLEQMVITPKLEIGNDLAFSDPCADEYEKKHYVDGHRVATEFVCKTDHRNVVTVERVVPEPADGEVERKRRRAN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0675700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0675700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0030880 | SBH | 0.172471 | 2.695133 | 1.675538 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0031660 | SBH | 0.352312 | 0.000000 | 0.754290 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0031230 | SBH | 0.300714 | 1.652880 | 2.567867 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0031060 | SBH | 0.021019 | 0.047703 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0029530 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0523700 | SBH | 0.016766 | 0.0045895 | 0.0248395 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0028170 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0528600 | SBH | 0.0149865 | 0 | 0.1128025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0030390 | SBH | 0.138349 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0028450 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0028560 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0029160 | SBH | 0.000000 | 0.000000 | 0.076356 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0029130 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G030410 | SBH | 0.000000 | 1.268872 | 1.400447 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0030100 | SBH | 0.191278 | 2.782490 | 3.328465 |
