Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g57660 | OGI:04100560 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:34329717-34332205 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACAGCGCACCGACATTATACTAGTCATATAAAAGAGAAGAAGAGCTCTCCCATCTCTATTAACAAAACGGCTTTGTTCAGCTACAGTTATTACAGAGAGAGAGAACAACTTGAAGCTTAAGTATCCACCACGCAGCTATCAACACTGGCACATCTGTACCAAATGGAAATCATGTCTACAATACGATGTGAAAGCAGCACTGCTAAATGACACCTGAGTTGAAAACAATCAAGACACCAAAAGCTGGAGAAATACAATATACAGAGTACATAATTCGATTGAAGAGCCTAGTTAGAACTAGTGGAGAACCCCGTCTGACTTTGTTTTAAGGATGATCTTTATGTTCCCATTTCCTTCTGAGTCTGTTCAAGTTCACCATTGTTATCACATAAAACCTATCAAAGAAATTATCAACCATCTGAAAATACGCGGCCCTCCAAGAACTTGCAAAGAACAGTACGTTCCAGACGGTTAACAGTCCAAAGGCAAATCCAGCTTCCACGGTCAAAAAAAGCCCAAAAGTAAAACGTGTCTCAGAACTCATTTCAGTCGTGACCGCCCGCTTGTAGCATGACTGGCTCTGACTACGACACAGCGCAGGATTGCCCGCGAACTCCTCTTCTGTGAACGTGGAGAATTGGCCTCCTGCCGGGACATCTCCAGACAAATTGTTGTACGAAACATCAAACTTGGACAGAAAGTTCAGCTTCGTTAGAGATGATGGTATGCTCCCACTGAGATCATTGTGAGCTAAATCCAGTACTTCCAAGCTCGACATATTTGATAACTCATCAGGAATTGGCCCAGAAAAATTGTTAAAGCCCAAGTCCAGCACATGAAGCTTCACTAGACGGCCAAAGGATGGCAATATTGACCCAACAAGCTTGTTATTTGAGAGGATCAGTGATGACGGGAAGCTACTGAGTTGGTTGTACTGCAAGCCTTTACCAGTGGAAGTCGAATTCTTCTTGACGAAGGATAATGGGAGGTCTCCTGTTGACGCCTGCCCACTTGAGCCATTACTTGAAATTAAACTCTTCATCTGTGTAAAGGTTGCAGGAAGCTCCCCACTGAATGAGTTGTTGGACAGATCGATGTAGAAAAGACTGTCGAGGTTGCCTAACCATGGCGGGATCTCCCCATGCAAATTGTTCCATGAAATATCCAGCACACTGAGGCTCTTCAAGCTCTGCAGCCAAGGTGGAACCGTGCCCAAGAGTGCACAGTTCGCCAGGACAAGAACCTGCATTCTCTTGAACCCTTCGATGCCGTCCATTGGCATGGTTTCACCACCACGGAAGTTATTGGTGAGCACCAAGCTAGTTAAGTTGGGCAGGTGCTGCAAGACTTGCAATGCTGATGACAAGTTGGTAAAACCATTCCCCGTAAGAGAAAGGTATGACAGTGATGTCAAATTCTTGAAGCTCTCCGGTAGCTCCCCCTGAAGCTTGTTCCTTGCAAGGTTCAGCGTCCTCAACTCAGTGCACGAGGCAAGGCGAGGCGGTATAGCACCACGCAGCGTGTTGGTCCCAGCATCAAAGTTGTTCAGCCTCGTGAGCAATCTGCAGTCAATGGTAATCTCACCGGACAGCGAATTGTTCCTCAGGCTGACCACTCTAAGCATCGGGCAGCTCGACAGGGATAGAGGCAATGTGCCATTCAATTGGTTGGAAGCCAAGTTTAAGGACTCCAAGCTCCTCAATTTCCCAAACACATCAGGGATATTGCCATTGAACATGTTATATGACAAGTCAATCAGGGTAAGCTTGGAGAGGTTACCGAGGGCCTTATCGAGGCTGCCAGAGAGCTGATTTTCCTGTAAGCTTAGCCACCTCAACTCTGGAATCGTGTACAAGTCCTTGGGGAGGCTCCCAGTAAGGCCATTGCCATCAAGGAAGAGGTCGTTGAGCAGCTTGCACTGACCAAAGCCGGCCGGCACATCACCAGAGAAGGCATTCGCCGAGAACCGCAGGACCTTGACCGGCGAAGCGCAGAGCGCGGTGACGTTGATGCCGCCGGAGAAGGCGTTGCCGGTGATATCAAGAACCGTCAGGTTCGGCGCACCGGGGAACGCGGGGTGCGGCCCGGTGAATCCGTTGGAGGAGACGTTCACCACCTCGATCGCCGGGAAGCCGCTCGCCGGGAACGCGCCAACGAGGCCGTTCGTGCTGAGGTCGAGGCGCCGCAGGCACGGCAGGCGGCCGAGCTGCGCCACCGCCACGCCCCGAAAAGAGTTCCGGGAGAGGCTCCGGTTGGAGAGATCCAGCTCCACCACCCTCCCGAGATCGCATGAAATGCCCGTCCACGAGCAGCAGGAGGTGTCGTTGGGACCCCATCCGACCAGCCCGGCGCCCATCCTGTCCAAGCCATCGGAGAAGGCCAGAAGCGACGCCAGGTCGGCGGGGTCGCACATCTGGGAGTGGCCGCCATGGATGTGGAGCACGAAGACGAACACATGTAAGAAGCGGATGCAACGGCAGCAGCTTCCC
More
|
||||||||||
| CDS seq | ATGTGCGACCCCGCCGACCTGGCGTCGCTTCTGGCCTTCTCCGATGGCTTGGACAGGATGGGCGCCGGGCTGGTCGGATGGGGTCCCAACGACACCTCCTGCTGCTCGTGGACGGGCATTTCATGCGATCTCGGGAGGGTGGTGGAGCTGGATCTCTCCAACCGGAGCCTCTCCCGGAACTCTTTTCGGGGCGTGGCGGTGGCGCAGCTCGGCCGCCTGCCGTGCCTGCGGCGCCTCGACCTCAGCACGAACGGCCTCGTTGGCGCGTTCCCGGCGAGCGGCTTCCCGGCGATCGAGGTGGTGAACGTCTCCTCCAACGGATTCACCGGGCCGCACCCCGCGTTCCCCGGTGCGCCGAACCTGACGGTTCTTGATATCACCGGCAACGCCTTCTCCGGCGGCATCAACGTCACCGCGCTCTGCGCTTCGCCGGTCAAGGTCCTGCGGTTCTCGGCGAATGCCTTCTCTGGTGATGTGCCGGCCGGCTTTGGTCAGTGCAAGCTGCTCAACGACCTCTTCCTTGATGGCAATGGCCTTACTGGGAGCCTCCCCAAGGACTTGTACACGATTCCAGAGTTGAGGTGGCTAAGCTTACAGGAAAATCAGCTCTCTGGCAGCCTCGATAAGGCCCTCGGTAACCTCTCCAAGCTTACCCTGATTGACTTGTCATATAACATGTTCAATGGCAATATCCCTGATGTGTTTGGGAAATTGAGGAGCTTGGAGTCCTTAAACTTGGCTTCCAACCAATTGAATGGCACATTGCCTCTATCCCTGTCGAGCTGCCCGATGCTTAGAGTGGTCAGCCTGAGGAACAATTCGCTGTCCGGTGAGATTACCATTGACTGCAGATTGCTCACGAGGCTGAACAACTTTGATGCTGGGACCAACACGCTGCGTGGTGCTATACCGCCTCGCCTTGCCTCGTGCACTGAGTTGAGGACGCTGAACCTTGCAAGGAACAAGCTTCAGGGGGAGCTACCGGAGAGCTTCAAGAATTTGACATCACTGTCATACCTTTCTCTTACGGGGAATGGTTTTACCAACTTGTCATCAGCATTGCAAGTCTTGCAGCACCTGCCCAACTTAACTAGCTTGGTGCTCACCAATAACTTCCGTGGTGGTGAAACCATGCCAATGGACGGCATCGAAGGGTTCAAGAGAATGCAGGTTCTTGTCCTGGCGAACTGTGCACTCTTGGGCACGGTTCCACCTTGGCTGCAGAGCTTGAAGAGCCTCAGTGTGCTGGATATTTCATGGAACAATTTGCATGGGGAGATCCCGCCATGGTTAGGCAACCTCGACAGTCTTTTCTACATCGATCTGTCCAACAACTCATTCAGTGGGGAGCTTCCTGCAACCTTTACACAGATGAAGAGTTTAATTTCAAGTAATGGCTCAAGTGGGCAGGCGTCAACAGGAGACCTCCCATTATCCTTCGTCAAGAAGAATTCGACTTCCACTGGTAAAGGCTTGCAGTACAACCAACTCAGTAGCTTCCCGTCATCACTGATCCTCTCAAATAACAAGCTTGTTGGGTCAATATTGCCATCCTTTGGCCGTCTAGTGAAGCTTCATGTGCTGGACTTGGGCTTTAACAATTTTTCTGGGCCAATTCCTGATGAGTTATCAAATATGTCGAGCTTGGAAGTACTGGATTTAGCTCACAATGATCTCAGTGGGAGCATACCATCATCTCTAACGAAGCTGAACTTTCTGTCCAAGTTTGATGTTTCGTACAACAATTTGTCTGGAGATGTCCCGGCAGGAGGCCAATTCTCCACGTTCACAGAAGAGGAGTTCGCGGGCAATCCTGCGCTGTGTCGTAGTCAGAGCCAGTCATGCTACAAGCGGGCGGTCACGACTGAAATGAGTTCTGAGACACGTTTTACTTTTGGGCTTTTTTTGACCGTGGAAGCTGGATTTGCCTTTGGACTGTTAACCGTCTGGAACGTACTGTTCTTTGCAAGTTCTTGGAGGGCCGCGTATTTTCAGATGGTTGATAATTTCTTTGATAGGTTTTATGTGATAACAATGGTGAACTTGAACAGACTCAGAAGGAAATGGGAACATAAAGATCATCCTTAA
More
|
||||||||||
| Protein seq | MCDPADLASLLAFSDGLDRMGAGLVGWGPNDTSCCSWTGISCDLGRVVELDLSNRSLSRNSFRGVAVAQLGRLPCLRRLDLSTNGLVGAFPASGFPAIEVVNVSSNGFTGPHPAFPGAPNLTVLDITGNAFSGGINVTALCASPVKVLRFSANAFSGDVPAGFGQCKLLNDLFLDGNGLTGSLPKDLYTIPELRWLSLQENQLSGSLDKALGNLSKLTLIDLSYNMFNGNIPDVFGKLRSLESLNLASNQLNGTLPLSLSSCPMLRVVSLRNNSLSGEITIDCRLLTRLNNFDAGTNTLRGAIPPRLASCTELRTLNLARNKLQGELPESFKNLTSLSYLSLTGNGFTNLSSALQVLQHLPNLTSLVLTNNFRGGETMPMDGIEGFKRMQVLVLANCALLGTVPPWLQSLKSLSVLDISWNNLHGEIPPWLGNLDSLFYIDLSNNSFSGELPATFTQMKSLISSNGSSGQASTGDLPLSFVKKNSTSTGKGLQYNQLSSFPSSLILSNNKLVGSILPSFGRLVKLHVLDLGFNNFSGPIPDELSNMSSLEVLDLAHNDLSGSIPSSLTKLNFLSKFDVSYNNLSGDVPAGGQFSTFTEEEFAGNPALCRSQSQSCYKRAVTTEMSSETRFTFGLFLTVEAGFAFGLLTVWNVLFFASSWRAAYFQMVDNFFDRFYVITMVNLNRLRRKWEHKDHP |
||||||||||
| Function | Phytosulfokine receptor 1 [UniProtKB/Swiss-Prot:Q8LPB4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g57660 | LOC_Os04g57660.1 | Chr04 | 34329717 | 34332205 | - | MSU_osa1r7 | ||
| CDS seq | ATGTGCGACCCCGCCGACCTGGCGTCGCTTCTGGCCTTCTCCGATGGCTTGGACAGGATGGGCGCCGGGCTGGTCGGATGGGGTCCCAACGACACCTCCTGCTGCTCGTGGACGGGCATTTCATGCGATCTCGGGAGGGTGGTGGAGCTGGATCTCTCCAACCGGAGCCTCTCCCGGAACTCTTTTCGGGGCGTGGCGGTGGCGCAGCTCGGCCGCCTGCCGTGCCTGCGGCGCCTCGACCTCAGCACGAACGGCCTCGTTGGCGCGTTCCCGGCGAGCGGCTTCCCGGCGATCGAGGTGGTGAACGTCTCCTCCAACGGATTCACCGGGCCGCACCCCGCGTTCCCCGGTGCGCCGAACCTGACGGTTCTTGATATCACCGGCAACGCCTTCTCCGGCGGCATCAACGTCACCGCGCTCTGCGCTTCGCCGGTCAAGGTCCTGCGGTTCTCGGCGAATGCCTTCTCTGGTGATGTGCCGGCCGGCTTTGGTCAGTGCAAGCTGCTCAACGACCTCTTCCTTGATGGCAATGGCCTTACTGGGAGCCTCCCCAAGGACTTGTACACGATTCCAGAGTTGAGGTGGCTAAGCTTACAGGAAAATCAGCTCTCTGGCAGCCTCGATAAGGCCCTCGGTAACCTCTCCAAGCTTACCCTGATTGACTTGTCATATAACATGTTCAATGGCAATATCCCTGATGTGTTTGGGAAATTGAGGAGCTTGGAGTCCTTAAACTTGGCTTCCAACCAATTGAATGGCACATTGCCTCTATCCCTGTCGAGCTGCCCGATGCTTAGAGTGGTCAGCCTGAGGAACAATTCGCTGTCCGGTGAGATTACCATTGACTGCAGATTGCTCACGAGGCTGAACAACTTTGATGCTGGGACCAACACGCTGCGTGGTGCTATACCGCCTCGCCTTGCCTCGTGCACTGAGTTGAGGACGCTGAACCTTGCAAGGAACAAGCTTCAGGGGGAGCTACCGGAGAGCTTCAAGAATTTGACATCACTGTCATACCTTTCTCTTACGGGGAATGGTTTTACCAACTTGTCATCAGCATTGCAAGTCTTGCAGCACCTGCCCAACTTAACTAGCTTGGTGCTCACCAATAACTTCCGTGGTGGTGAAACCATGCCAATGGACGGCATCGAAGGGTTCAAGAGAATGCAGGTTCTTGTCCTGGCGAACTGTGCACTCTTGGGCACGGTTCCACCTTGGCTGCAGAGCTTGAAGAGCCTCAGTGTGCTGGATATTTCATGGAACAATTTGCATGGGGAGATCCCGCCATGGTTAGGCAACCTCGACAGTCTTTTCTACATCGATCTGTCCAACAACTCATTCAGTGGGGAGCTTCCTGCAACCTTTACACAGATGAAGAGTTTAATTTCAAGTAATGGCTCAAGTGGGCAGGCGTCAACAGGAGACCTCCCATTATCCTTCGTCAAGAAGAATTCGACTTCCACTGGTAAAGGCTTGCAGTACAACCAACTCAGTAGCTTCCCGTCATCACTGATCCTCTCAAATAACAAGCTTGTTGGGTCAATATTGCCATCCTTTGGCCGTCTAGTGAAGCTTCATGTGCTGGACTTGGGCTTTAACAATTTTTCTGGGCCAATTCCTGATGAGTTATCAAATATGTCGAGCTTGGAAGTACTGGATTTAGCTCACAATGATCTCAGTGGGAGCATACCATCATCTCTAACGAAGCTGAACTTTCTGTCCAAGTTTGATGTTTCGTACAACAATTTGTCTGGAGATGTCCCGGCAGGAGGCCAATTCTCCACGTTCACAGAAGAGGAGTTCGCGGGCAATCCTGCGCTGTGTCGTAGTCAGAGCCAGTCATGCTACAAGCGGGCGGTCACGACTGAAATGAGTTCTGAGACACGTTTTACTTTTGGGCTTTTTTTGACCGTGGAAGCTGGATTTGCCTTTGGACTGTTAACCGTCTGGAACGTACTGTTCTTTGCAAGTTCTTGGAGGGCCGCGTATTTTCAGATGGTTGATAATTTCTTTGATAGGTTTTATGTGATAACAATGGTGAACTTGAACAGACTCAGAAGGAAATGGGAACATAAAGATCATCCTTAA
More
|
|||||||
| Protein seq | MCDPADLASLLAFSDGLDRMGAGLVGWGPNDTSCCSWTGISCDLGRVVELDLSNRSLSRNSFRGVAVAQLGRLPCLRRLDLSTNGLVGAFPASGFPAIEVVNVSSNGFTGPHPAFPGAPNLTVLDITGNAFSGGINVTALCASPVKVLRFSANAFSGDVPAGFGQCKLLNDLFLDGNGLTGSLPKDLYTIPELRWLSLQENQLSGSLDKALGNLSKLTLIDLSYNMFNGNIPDVFGKLRSLESLNLASNQLNGTLPLSLSSCPMLRVVSLRNNSLSGEITIDCRLLTRLNNFDAGTNTLRGAIPPRLASCTELRTLNLARNKLQGELPESFKNLTSLSYLSLTGNGFTNLSSALQVLQHLPNLTSLVLTNNFRGGETMPMDGIEGFKRMQVLVLANCALLGTVPPWLQSLKSLSVLDISWNNLHGEIPPWLGNLDSLFYIDLSNNSFSGELPATFTQMKSLISSNGSSGQASTGDLPLSFVKKNSTSTGKGLQYNQLSSFPSSLILSNNKLVGSILPSFGRLVKLHVLDLGFNNFSGPIPDELSNMSSLEVLDLAHNDLSGSIPSSLTKLNFLSKFDVSYNNLSGDVPAGGQFSTFTEEEFAGNPALCRSQSQSCYKRAVTTEMSSETRFTFGLFLTVEAGFAFGLLTVWNVLFFASSWRAAYFQMVDNFFDRFYVITMVNLNRLRRKWEHKDHP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.148810 | 0.355424 | 0.150607 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0672600 | RBH | 0.222013 | 0.533158 | 0.590281 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g57630 | RBH | 0.362717 | 0.376947 | 0.633674 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0672600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0030630 | RBH | 0.057220 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0031410 | RBH | 0.000000 | 0.000000 | 0.406236 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0030940 | SBH | 0.053663 | 5.958163 | 2.320041 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0030800 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031050 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0540800 | SBH | 3.645007 | 22.7398375 | 12.088713 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0029700 | RBH | 0.0 | 0.0 | 0.123245 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0546900 | RBH | 0.079453 | 0.683573 | 0.828428 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0030140 | RBH | 0.046526 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0029980 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0030100 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0030650 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0030660 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G030150 | RBH | 0.000000 | 0.000000 | 0.181691 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0029850 | RBH | 0.000000 | 4.097730 | 0.000000 |
