Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g57290 | OGI:04100050 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:34110319-34112206 | ||||||||
| Gene Symbol | OsFbox237, Os_F0241 | ||||||||||
| DNA seq | GAGAGAGAGAGTGGACGCCTACTACGTCCAAAAAAGAAAAAAAAAAGAAGAGGAGAGAGAGCGGAGGAGCAGCCTGCGACTCAGGCAGGCGCTGCAGCCTGCCTGTTTCTCCTCTTCAAATCACCCCAGATTTGCGATTCCCCCTCGCCGATCTCGCGGCGATGGGTGACGCGGCCGCGCCGCCGGCGGCGGTGGCGGCGGCGGCGCGGGCGGCGCGGCCGACGAGCCCGTCGCGCCCGCCCAAGGCGATCCGCAGCACCAAGCCGCGGGGGCTCGACGAGGAGACCGCCGCGCCCGCCGCCGCCACGTTCCCCTCCATCAAGGCCCCCTCCGCCGCCGCCGCCTCGCTCCTCCACGCCGACGTCCCCATGGAGGCGCGCGTCTGGGCGCCCCTCCCCGACGACCTCCTCCTCGAGGTGCTCGCCCGCGTCCCGCCCTTCCTGCTCTTCCGCCTCCGCCCCGTCTCCCGCCGCTGGGACTCCATCCTCCACGACCCGGCCTTCCTCGCCGCGCACGCCGGGGTCCCCTCCCACGGGCCCTGCCTCCTCACCTTCTGGAGGGGCGCCGCGAGCTCGCCGCCGCAGTGCAGCGTGCTCAGCCTGCCCCTCCGCGCCCGCTACAAGCTCCCGTTCGGCTTCCTCCCCGCCTGGGACCTCTGGCTAGTCGGCTCCTCGGGGGGTCTCGTCTGCTTCTCCGGCTTTGACGGCGCCGGATTCCGCACCGTGGTTTGCAATCCGCTCACGCAGACCTGGCGGGTGCTCCCGGACATGCATTACAACCAGCAGCGGCAGCTGGTGCTCGCGGTGGATAAGAAGCGCAGGTCGTTCAAGGTAATCGCCGCGAGCGATGTCTATGGGGACAAGACGCTCCCCACCGAGGTCTATGACTCCAAGGAGAATAAGTGGTCAGTGCATCAGATGATGCCTGCGGCGAATCTGTGCTCGTCGAAGATGGCGTTCTGTGACTCCAGGTTGTACTTGGAGACGCTCTCGCCACTGGGGCTGATGATGTATAGAGTGGATGCGGGCAATTGGGAGCATATACCAGCCAAATTCCCACGGTCGCTGCTGGATGGATATCTAGTTGCAGGAGCTCGCACACGGTTGTTCTTGGTAGGAAGGATTGGGCTATACAGCACACTGCAGAGTATGAGGATCTGGGAGCTTGATCATGGTAGGACAGTCTGGGTAGAGATAAGCCGGATGCCGCCCAAGTACTTCAGGGCTTTGCTGAGGTTGTCTGCTGAAAGGTTCGAGTGCTTTGGGCAGGACAACTTGATATGTTTCACATCGTGGAACCAGGGAAAAGGTCTTCTATACGATGTGGATAAGAAGGCTTGGTCATGGATTGCTGGTTGTGCAAGCCAGCTTTGCAATAGCCAGATCTGTTTTTATGAGCCAAGATTTGACACGTTGATCTATTGACAATGGTAGAGATGTCCTGCGAAGGCTCAAGCTCAAATGCTTCTCAGTTCAGTATCTGGATTCAGTACATTTTTCTATTGGAGCAAGGCTACCAGCCATATCAAGTGCTGGGATCGATAGTGTTTTCTTCCTCGAGACTGTAAGTTGAGATATTTCAACAAAGAGTTGAGTGGCCAACAATGACAAATCATGCCATTGGAGATCCATCGATCCTTTGTTACTTGAGAAGTTATGTTGTATGACAATGCTGTATGAGGATATATGGAAGGAAGTATCATCAGAAATAGAGGTCCGCTTGTTCCCATTCCATTTTGTTAGCAAATCCGTGACTTGTAAAATATTCCATTTTCATCTCTTAAATGAAAATCATTAGCATCTTGTTCTATAAGAAGGAATGATTGTGTTCACTCGATTCATGGAATTCTATCTGAAATATAGCACAATTTCAGTTTGTCATTGCTTTT
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| CDS seq | ATGGGTGACGCGGCCGCGCCGCCGGCGGCGGTGGCGGCGGCGGCGCGGGCGGCGCGGCCGACGAGCCCGTCGCGCCCGCCCAAGGCGATCCGCAGCACCAAGCCGCGGGGGCTCGACGAGGAGACCGCCGCGCCCGCCGCCGCCACGTTCCCCTCCATCAAGGCCCCCTCCGCCGCCGCCGCCTCGCTCCTCCACGCCGACGTCCCCATGGAGGCGCGCGTCTGGGCGCCCCTCCCCGACGACCTCCTCCTCGAGGTGCTCGCCCGCGTCCCGCCCTTCCTGCTCTTCCGCCTCCGCCCCGTCTCCCGCCGCTGGGACTCCATCCTCCACGACCCGGCCTTCCTCGCCGCGCACGCCGGGGTCCCCTCCCACGGGCCCTGCCTCCTCACCTTCTGGAGGGGCGCCGCGAGCTCGCCGCCGCAGTGCAGCGTGCTCAGCCTGCCCCTCCGCGCCCGCTACAAGCTCCCGTTCGGCTTCCTCCCCGCCTGGGACCTCTGGCTAGTCGGCTCCTCGGGGGGTCTCGTCTGCTTCTCCGGCTTTGACGGCGCCGGATTCCGCACCGTGGTTTGCAATCCGCTCACGCAGACCTGGCGGGTGCTCCCGGACATGCATTACAACCAGCAGCGGCAGCTGGTGCTCGCGGTGGATAAGAAGCGCAGGTCGTTCAAGGTAATCGCCGCGAGCGATGTCTATGGGGACAAGACGCTCCCCACCGAGGTCTATGACTCCAAGGAGAATAAGTGGTCAGTGCATCAGATGATGCCTGCGGCGAATCTGTGCTCGTCGAAGATGGCGTTCTGTGACTCCAGGTTGTACTTGGAGACGCTCTCGCCACTGGGGCTGATGATGTATAGAGTGGATGCGGGCAATTGGGAGCATATACCAGCCAAATTCCCACGGTCGCTGCTGGATGGATATCTAGTTGCAGGAGCTCGCACACGGTTGTTCTTGGTAGGAAGGATTGGGCTATACAGCACACTGCAGAGTATGAGGATCTGGGAGCTTGATCATGGTAGGACAGTCTGGGTAGAGATAAGCCGGATGCCGCCCAAGTACTTCAGGGCTTTGCTGAGGTTGTCTGCTGAAAGGTTCGAGTGCTTTGGGCAGGACAACTTGATATGTTTCACATCGTGGAACCAGGGAAAAGGTCTTCTATACGATGTGGATAAGAAGGCTTGGTCATGGATTGCTGGTTGTGCAAGCCAGCTTTGCAATAGCCAGATCTGTTTTTATGAGCCAAGATTTGACACGTTGATCTATTGA
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| Protein seq | MGDAAAPPAAVAAAARAARPTSPSRPPKAIRSTKPRGLDEETAAPAAATFPSIKAPSAAAASLLHADVPMEARVWAPLPDDLLLEVLARVPPFLLFRLRPVSRRWDSILHDPAFLAAHAGVPSHGPCLLTFWRGAASSPPQCSVLSLPLRARYKLPFGFLPAWDLWLVGSSGGLVCFSGFDGAGFRTVVCNPLTQTWRVLPDMHYNQQRQLVLAVDKKRRSFKVIAASDVYGDKTLPTEVYDSKENKWSVHQMMPAANLCSSKMAFCDSRLYLETLSPLGLMMYRVDAGNWEHIPAKFPRSLLDGYLVAGARTRLFLVGRIGLYSTLQSMRIWELDHGRTVWVEISRMPPKYFRALLRLSAERFECFGQDNLICFTSWNQGKGLLYDVDKKAWSWIAGCASQLCNSQICFYEPRFDTLIY |
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| Function | F-box/kelch-repeat protein At5g15710 [UniProtKB/Swiss-Prot:Q9LFV5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g57290 | LOC_Os04g57290.1 | Chr04 | 34110319 | 34112206 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGTGACGCGGCCGCGCCGCCGGCGGCGGTGGCGGCGGCGGCGCGGGCGGCGCGGCCGACGAGCCCGTCGCGCCCGCCCAAGGCGATCCGCAGCACCAAGCCGCGGGGGCTCGACGAGGAGACCGCCGCGCCCGCCGCCGCCACGTTCCCCTCCATCAAGGCCCCCTCCGCCGCCGCCGCCTCGCTCCTCCACGCCGACGTCCCCATGGAGGCGCGCGTCTGGGCGCCCCTCCCCGACGACCTCCTCCTCGAGGTGCTCGCCCGCGTCCCGCCCTTCCTGCTCTTCCGCCTCCGCCCCGTCTCCCGCCGCTGGGACTCCATCCTCCACGACCCGGCCTTCCTCGCCGCGCACGCCGGGGTCCCCTCCCACGGGCCCTGCCTCCTCACCTTCTGGAGGGGCGCCGCGAGCTCGCCGCCGCAGTGCAGCGTGCTCAGCCTGCCCCTCCGCGCCCGCTACAAGCTCCCGTTCGGCTTCCTCCCCGCCTGGGACCTCTGGCTAGTCGGCTCCTCGGGGGGTCTCGTCTGCTTCTCCGGCTTTGACGGCGCCGGATTCCGCACCGTGGTTTGCAATCCGCTCACGCAGACCTGGCGGGTGCTCCCGGACATGCATTACAACCAGCAGCGGCAGCTGGTGCTCGCGGTGGATAAGAAGCGCAGGTCGTTCAAGGTAATCGCCGCGAGCGATGTCTATGGGGACAAGACGCTCCCCACCGAGGTCTATGACTCCAAGGAGAATAAGTGGTCAGTGCATCAGATGATGCCTGCGGCGAATCTGTGCTCGTCGAAGATGGCGTTCTGTGACTCCAGGTTGTACTTGGAGACGCTCTCGCCACTGGGGCTGATGATGTATAGAGTGGATGCGGGCAATTGGGAGCATATACCAGCCAAATTCCCACGGTCGCTGCTGGATGGATATCTAGTTGCAGGAGCTCGCACACGGTTGTTCTTGGTAGGAAGGATTGGGCTATACAGCACACTGCAGAGTATGAGGATCTGGGAGCTTGATCATGGTAGGACAGTCTGGGTAGAGATAAGCCGGATGCCGCCCAAGTACTTCAGGGCTTTGCTGAGGTTGTCTGCTGAAAGGTTCGAGTGCTTTGGGCAGGACAACTTGATATGTTTCACATCGTGGAACCAGGGAAAAGGTCTTCTATACGATGTGGATAAGAAGGCTTGGTCATGGATTGCTGGTTGTGCAAGCCAGCTTTGCAATAGCCAGATCTGTTTTTATGAGCCAAGATTTGACACGTTGATCTATTGA
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| Protein seq | MGDAAAPPAAVAAAARAARPTSPSRPPKAIRSTKPRGLDEETAAPAAATFPSIKAPSAAAASLLHADVPMEARVWAPLPDDLLLEVLARVPPFLLFRLRPVSRRWDSILHDPAFLAAHAGVPSHGPCLLTFWRGAASSPPQCSVLSLPLRARYKLPFGFLPAWDLWLVGSSGGLVCFSGFDGAGFRTVVCNPLTQTWRVLPDMHYNQQRQLVLAVDKKRRSFKVIAASDVYGDKTLPTEVYDSKENKWSVHQMMPAANLCSSKMAFCDSRLYLETLSPLGLMMYRVDAGNWEHIPAKFPRSLLDGYLVAGARTRLFLVGRIGLYSTLQSMRIWELDHGRTVWVEISRMPPKYFRALLRLSAERFECFGQDNLICFTSWNQGKGLLYDVDKKAWSWIAGCASQLCNSQICFYEPRFDTLIY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.393673 | 0.802747 | 0.643332 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0668600 | RBH | 2.147318 | 1.243587 | 2.521105 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0668600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0030320 | RBH | 0.220006 | 7.597380 | 3.303860 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0031090 | RBH | 0.185966 | 0.758788 | 1.332311 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0030660 | RBH | 0.550517 | 7.083169 | 4.973685 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0030490 | RBH | 0.041293 | 0.221219 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0030750 | RBH | 2.765848 | 5.985187 | 8.141044 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0537800 | RBH | 2.1773865 | 8.482524 | 8.4695915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0029400 | RBH | 0.0 | 0.617536 | 0.366270 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0543200 | RBH | 2.4306145 | 7.2573775 | 9.8655255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0029830 | RBH | 0.0 | 0.211075 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0029680 | RBH | 0.211234 | 12.233503 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0029800 | RBH | 0.0 | 7.312378 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0030350 | RBH | 0.0 | 0.552930 | 0.381362 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0030360 | RBH | 0.068365 | 2.384876 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G029840 | RBH | 0.272352 | 0.515014 | 1.719263 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0029560 | RBH | 1.375934 | 4.570355 | 2.266459 |
