Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g57160 | OGI:04099860 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:34060040-34063474 | ||||||||
| Gene Symbol | F3H3, OsF3H-3, F3H-3, OsF3H3 | ||||||||||
| DNA seq | GCGTACAGTTCTAATTCTGCATAACCAATTGGCGTACCTGAGCTGCGTGTGGCTTCTTCGCTGATCAACAATGTCTGACACGTCGAAGGGTATCCCTCAAGAGCAGCTGCCATCACAGGAGCTCCACCCGCCGCCAATGCCAGTGATCAACCTTGGCCACCTCAGTCTTGATGATCCCACGGTGCGGTCCCGGGTGGTCAACGATATCGCCAAAGCATGCCGTGATCTGGGATACTTCCAGGTAAATTTCCTTTAACGCAACGTAGTGACACAGCCTTTTTGTCATGTTCTTACTCTCTAGACTTGGTCTTTTCCTATGTCCAAACACTGAAGACAGTTTACGTTGACGCCATTTTGACATGTGCTAGAATGGTATGGGGTAGTCAACCAAGGAAGCTTATCCTTGTGTCCCAGCCACATTTCTATCTGGCAGAAAACTCCAAATCAAAGAGCAAGTAATTGAACCCTAGGAGCTATCAGATCGGGACCCTTCTTTGAAATCCTGCAGGTAGCAATGGCAGCATAATATTGTTCGCTAACGGTGAAGAATATGGTATGCGCCTCCTTTTTCTGGAAGTGGTGATATGGGCAGTCTGTATCTACTGAACTACATGTTTGATGAGCTGCATCCTATTTTTGCTCCCACCAAAATGGAGAGTTTGATCTGTGCAAGTCTAGGAAAACTGTACATATAGTACAATTCACTGCACCAACTCTATGTATGGGCTAAACAGCTCTTTCATGAAAATGGGAAAAACTAGATAAGGAAAAAAAACAACTAAACTTTATCAGTTTGTTATGTGGAAACCCACAAATGATGAAGCGGAAGCAAACCTTGTGCTGTGAGCATGCTAGACTTGATTAGCTTGCCAAACCGAAGGTACACAAATACATGACATATGCAAAGTACCGTATCATTGCAATGCAATGAATGACTTGATACTTTGAATTGAGACCTTAGTTCTTTGTAACAATAAATATTTCAATGATGAACTGTAAATTAGTATTCACAAAATTTGAAAAGATATGCCAAAGTATCTCTTTCTAGGTTAAAAAAGACATATGTAAAACCTCTATATGATCATCTACTTTTTACAAGATTGGTTAACATTTCAAGTTCACAAGTCTGAAACTGACTCTACACCTAATCGATATTTTAGCTTTGGGTTCTAAACCACTGCAATTTTTTTTTCTTTTTCCGTCCATGTGGACATATCAAGGCTGCCAGCACTATCACTGGGGTGTTTTATAAACCTTTCAGTAATGACAAGAACGGACCATGTATATAAAAGTGCAATTTGTGCATATAGAGAAGGACCATTCAAATGCTATTTTTCCTGATTAAGTTGCTACTTCATAAGATAAGTACCAAAGCATTCTTTTCCTACATCATCACTAACTAGCAGGCAGTAAGGGAACAAAGAAAGCTTACTTGTGCACCCAAGTCTCTACTAATTCTGCCATTTTGCAGGTTATAAGTCATGGGATCAGTCAATCAGTCATGGATGGTGCTATTGAAGCTGCTTCAGAATTCTTCAAACTGCCAAATGAGATAAAGAAAGAGTATGCATCAGATGATATCCGGCAACCTGTTAGATACGATACCAGCTCAAAGGATGGCATTAGTATGTCTCGGGCATTCCTGAAGCATTATGCCCATCCCCTCTGCGATTGGCTGCAATACTGGCCACAGCAACCACCAATATATAGGCAAGCAGTTTCTTCTCTTAGAAAGTCATTTTACATTGTTGAACAAACAAAATAACAGTGCATGACAGTAAGAATGAAAATGACTCCTTTTGTTTATTGAAAACAGGGAATACATGGCAAAATATGCCGTAGAAGTAAGGGTGGTGGCTCTGAAACTGATGGAAGCAATTCTAGAAGGCCTAGGCATTGGCAAGGAATACATGCAAGAGAAATTTGAGGAAGGCTTACAGCTATTGTCAGTGAATTGCTACCCTAAAGTGTCTCAAAGTGATACGTCAATAGGTCTGGCAGCACATTCTGATTATGGGCTCCTAACCATCTTGCTCACAAGTTGTCAGGGCCTTGAGGTTGTTGACCGCAGCAGCAACAGCTGGAAAGTGGTCCAGCAACTCCCACATGCATTGCATGTCCATGTAGGAGACCACATGGAAGTTCTAAGCAATGGCCGAATCAAGACTGTTGTGCACCGCGCTGTTCTGAATCCTCAAGAAGCAAGGATTTCTCTCGCTAGCATTCATGGTTTTGCACTGCATGAGAAGGTCTCCAGTGCCAAAGAGCTGGTCGACGAGGAAAATCCACAAAAGTACAAAGAAAACAGCTTTAATGACTTCCTAGAGCATCTCACTGCCAATATGGACAACAGGCAAAGGAACTTTCTTGAGAGCCTTAGAATGTAAGGGGCACATTCACGGTACGGTCTTCACTTTACGTCCAAAAGTAGGTAGTACGATGTGCATATGTCTCCCAACAGTTTATCCCTATCTGTTTCAGACTAATGCTGCGTCTTTAATTAGTCTATTTTGTACCATTTTGATCTAGTTTTACTAACTTGTTTACTGTCAAGTTGTTTTTCCTTTCCATCATACGGTATTGATATGGGTCTGTAGAAGGTAAGGAAAACCAACCGTGTAAAAAATATACAATAACAATAGGGCTCCTGCTGTTAGCCATTTAAGCTAGGACTTTGTATTAACTACTCCGTATGAAAGGGACACATTTATTCATTTTGTTTATTTTTTCTTGGTGGACACTGTCATCCATATAAAATTTTTACATTTAAGAGCCAAGGAATTAAGGAAGAATAAAGATTTATGAATGAGAAACAATGAAAAGAGTGAAGTACAGAAGGTAATCACGTTAAGAAAAATGATGTGAGAAACGCCTAGGAGTCTTCCGGCTAGCTCCACAAGGTGGTGGGCTAGACGACCTGGATTCGAAGTTTCACCCCTTCTAATTATTTGATATTAGGTCCTTCCCTAATATTCACGTCTTTTTTGTTAAGAAAAATGATGTAACCATCTATAAGGAGCAAATCCAGACCAGAAGTGCTCAATTATATACCTTGTGGTTATATACATGGTCATGTAATTTGTTTTTATGGTATGAGATTTTAACATCACCCAATCATGTAGGCCAATTGGTTCTATGGTATTGAGAAGCAGATCAAGCTAAAGTTTATCTTGGCATGTTGAAATCCTAAGCATCATCATCATCATCATCATCATCATCATCATCATCATCAATACAAGCCATATCTTGGCTGCCAGGTGTCCATTTCCAGTCTAATAAGAGTCAGTTGGTTTTTCTTTCAGAGAAACGCATGTAATTATCTTTAGCCATCATCTACAACTTTTAGGATCGAATATATTTCAAAATTTAAAGTGCATGTGTGGTTTACATGTCCCAATGTGTAATTCCATTATATATATTAAGCATGCCATTTAC
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| CDS seq | ATGTCTGACACGTCGAAGGGTATCCCTCAAGAGCAGCTGCCATCACAGGAGCTCCACCCGCCGCCAATGCCAGTGATCAACCTTGGCCACCTCAGTCTTGATGATCCCACGGTGCGGTCCCGGGTGGTCAACGATATCGCCAAAGCATGCCGTGATCTGGGATACTTCCAGGTTATAAGTCATGGGATCAGTCAATCAGTCATGGATGGTGCTATTGAAGCTGCTTCAGAATTCTTCAAACTGCCAAATGAGATAAAGAAAGAGTATGCATCAGATGATATCCGGCAACCTGTTAGATACGATACCAGCTCAAAGGATGGCATTAGTATGTCTCGGGCATTCCTGAAGCATTATGCCCATCCCCTCTGCGATTGGCTGCAATACTGGCCACAGCAACCACCAATATATAGGGAATACATGGCAAAATATGCCGTAGAAGTAAGGGTGGTGGCTCTGAAACTGATGGAAGCAATTCTAGAAGGCCTAGGCATTGGCAAGGAATACATGCAAGAGAAATTTGAGGAAGGCTTACAGCTATTGTCAGTGAATTGCTACCCTAAAGTGTCTCAAAGTGATACGTCAATAGGTCTGGCAGCACATTCTGATTATGGGCTCCTAACCATCTTGCTCACAAGTTGTCAGGGCCTTGAGGTTGTTGACCGCAGCAGCAACAGCTGGAAAGTGGTCCAGCAACTCCCACATGCATTGCATGTCCATGTAGGAGACCACATGGAAGTTCTAAGCAATGGCCGAATCAAGACTGTTGTGCACCGCGCTGTTCTGAATCCTCAAGAAGCAAGGATTTCTCTCGCTAGCATTCATGGTTTTGCACTGCATGAGAAGGTCTCCAGTGCCAAAGAGCTGGTCGACGAGGAAAATCCACAAAAGTACAAAGAAAACAGCTTTAATGACTTCCTAGAGCATCTCACTGCCAATATGGACAACAGGCAAAGGAACTTTCTTGAGAGCCTTAGAATGTAA
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| Protein seq | MSDTSKGIPQEQLPSQELHPPPMPVINLGHLSLDDPTVRSRVVNDIAKACRDLGYFQVISHGISQSVMDGAIEAASEFFKLPNEIKKEYASDDIRQPVRYDTSSKDGISMSRAFLKHYAHPLCDWLQYWPQQPPIYREYMAKYAVEVRVVALKLMEAILEGLGIGKEYMQEKFEEGLQLLSVNCYPKVSQSDTSIGLAAHSDYGLLTILLTSCQGLEVVDRSSNSWKVVQQLPHALHVHVGDHMEVLSNGRIKTVVHRAVLNPQEARISLASIHGFALHEKVSSAKELVDEENPQKYKENSFNDFLEHLTANMDNRQRNFLESLRM |
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| Function | Flavanone 3-dioxygenase 3 [UniProtKB/Swiss-Prot:Q7XR84] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g57160 | LOC_Os04g57160.1 | Chr04 | 34060040 | 34063474 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCTGACACGTCGAAGGGTATCCCTCAAGAGCAGCTGCCATCACAGGAGCTCCACCCGCCGCCAATGCCAGTGATCAACCTTGGCCACCTCAGTCTTGATGATCCCACGGTGCGGTCCCGGGTGGTCAACGATATCGCCAAAGCATGCCGTGATCTGGGATACTTCCAGGTTATAAGTCATGGGATCAGTCAATCAGTCATGGATGGTGCTATTGAAGCTGCTTCAGAATTCTTCAAACTGCCAAATGAGATAAAGAAAGAGTATGCATCAGATGATATCCGGCAACCTGTTAGATACGATACCAGCTCAAAGGATGGCATTAGTATGTCTCGGGCATTCCTGAAGCATTATGCCCATCCCCTCTGCGATTGGCTGCAATACTGGCCACAGCAACCACCAATATATAGGGAATACATGGCAAAATATGCCGTAGAAGTAAGGGTGGTGGCTCTGAAACTGATGGAAGCAATTCTAGAAGGCCTAGGCATTGGCAAGGAATACATGCAAGAGAAATTTGAGGAAGGCTTACAGCTATTGTCAGTGAATTGCTACCCTAAAGTGTCTCAAAGTGATACGTCAATAGGTCTGGCAGCACATTCTGATTATGGGCTCCTAACCATCTTGCTCACAAGTTGTCAGGGCCTTGAGGTTGTTGACCGCAGCAGCAACAGCTGGAAAGTGGTCCAGCAACTCCCACATGCATTGCATGTCCATGTAGGAGACCACATGGAAGTTCTAAGCAATGGCCGAATCAAGACTGTTGTGCACCGCGCTGTTCTGAATCCTCAAGAAGCAAGGATTTCTCTCGCTAGCATTCATGGTTTTGCACTGCATGAGAAGGTCTCCAGTGCCAAAGAGCTGGTCGACGAGGAAAATCCACAAAAGTACAAAGAAAACAGCTTTAATGACTTCCTAGAGCATCTCACTGCCAATATGGACAACAGGCAAAGGAACTTTCTTGAGAGCCTTAGAATGTAA
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| Protein seq | MSDTSKGIPQEQLPSQELHPPPMPVINLGHLSLDDPTVRSRVVNDIAKACRDLGYFQVISHGISQSVMDGAIEAASEFFKLPNEIKKEYASDDIRQPVRYDTSSKDGISMSRAFLKHYAHPLCDWLQYWPQQPPIYREYMAKYAVEVRVVALKLMEAILEGLGIGKEYMQEKFEEGLQLLSVNCYPKVSQSDTSIGLAAHSDYGLLTILLTSCQGLEVVDRSSNSWKVVQQLPHALHVHVGDHMEVLSNGRIKTVVHRAVLNPQEARISLASIHGFALHEKVSSAKELVDEENPQKYKENSFNDFLEHLTANMDNRQRNFLESLRM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g57160 | LOC_Os04g57160.2 | Chr04 | 34060040 | 34062557 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCTGACACGTCGAAGGGTATCCCTCAAGAGCAGCTGCCATCACAGGAGCTCCACCCGCCGCCAATGCCAGTGATCAACCTTGGCCACCTCAGTCTTGATGATCCCACGGTGCGGTCCCGGGTGGTCAACGATATCGCCAAAGCATGCCGTGATCTGGGATACTTCCAGGTTATAAGTCATGGGATCAGTCAATCAGTCATGGATGGTGCTATTGAAGCTGCTTCAGAATTCTTCAAACTGCCAAATGAGATAAAGAAAGAGTATGCATCAGATGATATCCGGCAACCTGTTAGATACGATACCAGCTCAAAGGATGGCATTAGTATGTCTCGGGCATTCCTGAAGCATTATGCCCATCCCCTCTGCGATTGGCTGCAATACTGGCCACAGCAACCACCAATATATAGGGAATACATGGCAAAATATGCCGTAGAAGTAAGGGTGGTGGCTCTGAAACTGATGGAAGCAATTCTAGAAGGCCTAGGCATTGGCAAGGAATACATGCAAGAGAAATTTGAGGAAGGCTTACAGCTATTGTCAGTGAATTGCTACCCTAAAGTGTCTCAAAGTGATACGTCAATAGGTCTGGCAGCACATTCTGATTATGGGCTCCTAACCATCTTGCTCACAAGTTGTCAGGGCCTTGAGGTTGTTGACCGCAGCAGCAACAGCTGGAAAGTGGTCCAGCAACTCCCACATGCATTGCATGTCCATGTAGGAGACCACATGGAAGTTCTAAGCAATGGCCGAATCAAGACTGTTGTGCACCGCGCTGTTCTGAATCCTCAAGAAGCAAGGATTTCTCTCGCTAGCATTCATGGTTTTGCACTGCATGAGAAGGTCTCCAGTGCCAAAGAGCTGGTCGACGAGGAAAATCCACAAAAGTACAAAGAAAACAGCTTTAATGACTTCCTAGAGCATCTCACTGCCAATATGGACAACAGGCAAAGGAACTTTCTTGAGAGCCTTAGAATGTAA
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| Protein seq | MSDTSKGIPQEQLPSQELHPPPMPVINLGHLSLDDPTVRSRVVNDIAKACRDLGYFQVISHGISQSVMDGAIEAASEFFKLPNEIKKEYASDDIRQPVRYDTSSKDGISMSRAFLKHYAHPLCDWLQYWPQQPPIYREYMAKYAVEVRVVALKLMEAILEGLGIGKEYMQEKFEEGLQLLSVNCYPKVSQSDTSIGLAAHSDYGLLTILLTSCQGLEVVDRSSNSWKVVQQLPHALHVHVGDHMEVLSNGRIKTVVHRAVLNPQEARISLASIHGFALHEKVSSAKELVDEENPQKYKENSFNDFLEHLTANMDNRQRNFLESLRM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.095170 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0667200 | RBH | 0.000000 | 0.000000 | 0.369710 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0667200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0030200 | RBH | 0.082086 | 5.731569 | 0.462251 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0030970 | RBH | 0.0 | 0.767776 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0030540 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0030370 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0030630 | RBH | 0.678221 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0537100 | SBH | 1.5647455 | 6.7503885 | 6.6539355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0029280 | RBH | 0.000000 | 0.196659 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0541800 | RBH | 0.2511545 | 0.335375 | 0.322156 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0029710 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0029560 | RBH | 0.131572 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0029680 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0030230 | RBH | 0.224833 | 0.346188 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0030240 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G029720 | RBH | 0.000000 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0029440 | RBH | 0.0 | 1.916955 | 0.000000 |
