Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g56850 | OGI:04099400 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:33888004-33894393 | ||||||||
| Gene Symbol | MP, OsMP, OsARF5, OsARF11, DLN125, OsDLN125, OsMP/OsARF11 | ||||||||||
| DNA seq | CGTTCTATAATACTACATTGAAAAATTTGAAAATCATTGTTTTTGGTTCTACAATCTAACTCATGTTTGTATACTGTACTACCTCCCCTCGTATTGCATCATGGAGAGAGATCAAACTGAATGTATACTGAGTGAAGTAAGGAACCAAATAAGTTTCTGATTCGACATAGCTCGCAACATACAGTGGAAGTTGGAAATGCATCAAAGCATGAGTAATCACTGCACACTATTTTCCACAGCTTGGGCTTTCCTACCTGGTCTTCTTGCAAAAGATGAGCCTTTTTTTTTCCTGTAAGTCTCTACCACAAACACTACTGTCAAGTGTCAACAAATCAGCTTAACATTCAGTAATGCAACGCATTCAGAGAACTACAGCTTCTCGGATGTGCATTTCTCTTGTGGCCTTCATGTCGATATAGAGCTTCATCCAGAAAATGGTACTACTAAGCTGCTTGAATACAGTCGTTCAAAACATGCATGCCATTCTCGCTCATCTGTTGTACTTCTGAAGGTGACAAAATCCGGATGCACCGGACACAGTTGATGAATTCCCTGTAGAAGCAAAAGCACATAGGTATGAGTGTCAATTAATATGCTGACCAGGAGTAGAAAGAACAGGAGACACCAATTCGAAGACATGTCTACTTACTCCCATGGATCATCTCCGACAAGAAGAACATCATTTTCGTAGTCGACATATACAAGCTTCCACTCTGAACTGCCAGGATGCTCCAATTTCCCCTGGAGACCAAACATGCAAGCGATGGCAGATCTCAACTCATGGTAATTTCTAAACCCTGTAACATCGATAGATCTTCCAACTGATCCTTGCTTTTGAACCTATGTATTACAAAAAAAAACATAATAGATAGTTGTTAAGTTATATTTACTATCAAGAGCATTTGACAAATGGTAACATATAAACAGTCAAGTAGTATAAACCTTTGTATATGTCCGCACTGGTGGTTTCATCGGCTTCGCACTTCGGTCAAGGCTGTACTCGGTTGCATCCATACTGCAAGCTGATGTTCCCATGGAATTGGTATGAATCTCTGGCAAAGACAAGATTTGGGATTCTTTTAAACGTGGCAACTTTGAGTACATCCCTGCATCAAAGCCCCCAGTAGACATTGGTTGAGAGCATGAAGTGGTGTTTATGCTTCTGTGTGTAGATTCCATGTGAAGTCCACTTAAGTTTGCACTCTGACTTGCACTCTCTTCAGAAAAACTCATCTGTACAAACGAGTTGGACGTGCTTGGCAAATTGCTTCCATCATGCTGGAGTTGGACCTCCAAATTTTGCATGTCAGGTGAAAGAAAGGTTAGTGAATTCAGATCTGGGCTGGAGATGAATTCTTGTATGGAATTAGGAAGGCAATCAGAAAGACATGAAGCCTGAAAAGTCTCCATAGTATCAGCAATCATTGAGGGAGGTATATCTGCAGAAGAACTGAAAATGTTCTCTGACACACCGGCTGGTTGAATTACATTGGAGTCTTGGTAGTAGGAAGGCTGAGTCATCCAATCAAGACCATCAATGAACTGCGAAAAACACCCTTGGTTTGGAAACGAATTGACAGACTTTCCTCCATCAGGTGATTTTGATGATTCTACCTTTGGTGGCGACAGCACTCCCTTTTGTTCAACCTGATGGCCATGCGGCTGTCCAACAAAATTACCTTGAGTAAGTGCACCTGATGAATCTTCAATATTTCCACAGTTTACTTGTTCATCACAACCAACCAGTTTCGATTCTAAACCAACCTGCTGATTGTCACAGATCCAAGAAGGGGCTGAAGAAAGGTCAGATTTCTCTGAAACGGTTTTGTGAGGCAAGCCCTTCTTACTCCTACGAGTCTTGCCTCTAGGCTCACCCTTACTGTTTTGCTCCGAAGTACTTCGACTTGTGTATGAATCTGTGTTTCTTGGATCTCTTGATGTAGCATTCAACTTTGACTCAGAAATCGAATCAATGACAGGCTGGACTTCAGAGCCTTCAAGATCACCATTCTGCATATTTGCCATATGGAACTGGTGCTGGGCATCATCTGAAGGCAGGCTTTCTTGCTTTGTCAAACAAGCTGAAGTGCTAACTGTTAGAGGAGGGATATAATTTTGCTTCACATTTTGGATAATACTAGAATATGAGGACTGGTGAAAACTAAGGGGACTCCCAAGGGTTTGACCAGATTGGTTGAGAAGCATGATAGCCAATTCTGATCCAACAGCTGGAATGTGCTGCAAACTGCCATAGGGATTACCCTGAGCCCTTGGAAATGATGACATATTTGCTGATCCAATTTCCATCCCAGGCACTGAAACTGCAAAAGGGTAAGGCATGTTTCAGCATATTGCACGACCATAAATATTTGTATAGCATATGTCAGAGACATACCTCCATAACCAGGAAGACATTGCCGCTTTGAATTCAAGGTCGACGAAGGGAACACAAGAGTGTTTTCTGGAGTTTCAATATCCCATATGCTCACACGCTCAGGTCTTTCTCCATACCCATGTTCATCCCATTCGACCTAGTAGCAAGAAGTATATAAATATCAAATACACCATGATAGGCAGAATTCTGAGTTTTCCTTAAGCTTTTGCATGAAAAAGGCACCTGTAAGTTGCGCCATTTAGAATTGGGCCATCTCATGGGGTCGTAGTCACTTATTCCCACAACTGTACCTGTGTATCTGTAAAACAAGACAATTTTGTTTACAATATGGAATATGTTTTCTAGCTGTACTTAATCAACAAAACGCTAAACTCAACATAGAACGCAAGTATGCCCATGCAACGACATTTGATGTAGTCATTATTTTTCCAATGTGAATCATGAAAATTCACAGTTGAATTATTTATACTTTTAAAGCAGCATAATCCATTACACGGTTGTACACCAAGGTCTAGTTTGTGGACATAAATAAATAGCATAAAGATAAAATCTGAAACAGAAAACAAAAGCTATGTAAAATGAGAACAAAAAGTGGACAAACCTGCGCTTGCTTGACTCCTCTGTCTCAAACATCATCGCAAATCTCATTCCAACTGATGGTTGCATATATGTTGCCTTGTTGTACCTTGCTACAGGAATTACAAATGGCGAAGGACTTGTCCTATGGAGATTCCATGAATGACCAAATGCTCACCAGGAAAAAAAAAAGCATATGTAAAAGGGTAAGTAAATTTCTGTACCTAGGATTGTAGTAGATAGTAAATGAACTACCACTTGATGCGGCATGAGCTGCAGCAGCAAGAACGCCAATGTGCATGCTATCAGTAGATAGAACAGAAGATGACAACATTGTTTGTTGTCGCGTGGCTCGCCTAACACCCAAAAGAAGTTGTGACTTCTCATCCCTGCAATCAGGAACTTCTGTCAAAAATGGCATTTCATCCTCACATATTTGTGAAGAAAATATTATACTATTACATACAAGCTGTTGTCAGTCCGAGCGAGTAAAAAGTGCGGTGTCCTATAACAGTCATATTCACATTAGAACTGACAAGAAATAGAAAAGTTATTGTTGTTGAGATTTTAATATTCTAGAAAGTTGAATATGTATATATTGGTTAAGGTTAAGTAGATAGCCGCTGTAGGAAAATCTAATACTGGTAATGGACATTCTTTCGAAAGAGCAAATAACATAAGCAGTTCTTGTGGTATTTCAATGCATGAATTGTTGCATAGGGTTTAGTATCAAAAGGCTTAACAATCTCAGATTCAATTTTCTGATAGCACACACAGGTTAAGTAACAAACAGACTTTGCATGTATTTATAGAACTTATTTCACCTTATAAATAAGACAGAGTCCCCTGCTTTTAGACGCTTTGCCCCAACAAAGAGACTCCATCCAGTTGTTAGAAGATGTCGTTTTGGCTGTCCTGCAAGGGACAAGAAAAGAAGAAACTTTTAGGAGACAGTGGCCCAAGAAGCATATATTTATGTATCAATGAACAAGACAAATAAAATCCGAATATTGTTTGACCCTACCACGATAAATGTGACGGAATGTCCACATGTTATCATGCAAATCTCGAACAATAAGCTCCTGGTTAGGAGGTTGCATTGAGTAATCCTGTCGGTACAAAACTTAAACCCATGAGCTGAAGCATTTTTTTACAGAAAAACTATGCGGCAAACAAAATGTAGATAAAGGCTATACCAGTTGTGGGAACAACTTCTCTGCAGCCCTTCGTGGCACCGAGAAACCACCATGTGTACTCGTATCACTTGCGGTTAAATTCTTGCAGAAATATTCAGTGGGGTGCTTGCTTTTGGTATAAGCACCAAGAGTTGGAATAGGGAATACATCCGTTTCCTACAATAGACGGCACAAATAAATATTAATTTAGAATCCATCTTTTATTCCTTGCACACTGAATTTTTGTTTCTGTAATCACATTTTATGCATTTCAATAACAATTGGTGTTTACATTTTAATAGAACCAAATAAAGTAGTACAGAACTCAGTACACAATGTAACAGAGAAACATCATACTTACAGAGTTTACTGGCTGAAGGGTCATCTGTGCATAAACTTCATCAGTGTCCTTGTCGGCCTGTGCAAAACAAACAATCAAGCACAGGCAAAACACATTTGGCCACAAATATGTTTGGAATTGAATTTGCTTGAACTCACATGCAAGGTGATGTTGTGAACTTGACACAGCAACTGAGATGGCAGGTTTGGGTAGTTCGGAATGCGGGAATTTGGAATCTTTCTAGTTGTCGCTGCAACCTGCAAGGGCATCATCCCTTCAACATTGATCATTCCAATAGCAATCCCAAAGTATTATTGAGCATCAATCTGACCAAATTGTTGTCTATGGTTGCAGCATTTCAAAACGAGATTAGCTGCAATTTGTGAAAAAAGACAGTAAGATTGACCTGTTCACTGTGCCCCTGAGGGAAGTAGTACACGAGGCTCCCCCGCTGCGGCAAGCACACAAGCGGCCCGGCACAAGCGTGCCAGAGCTCCGAGTTGATCACCTTCTTGGCACCTGAAGAAGGAACGGACGCTACTCGCATCATGCCAAAAATTGCAACAAATTTGTGCGCAATTATGCATCAACAAGCAGCAGAATCTGACTGAAAGTCTGAAACACTCACCCTGTGTTTCTCCCATGAGCTGCATTTCGTCGAGCAGCGCTGCGGCATTTCTCAGAACACCCGTCTTGGCCTTCTCCTGCGAGGACGCCATATGTCTCCAAGAAACCCAAGAACAGCTGCAATCTGAATGCCAAGATTCTGATAAAACCTCAATTCCAGAGTACTAAGCCAAGCGAGCAGCTTAGCCACACTTCACCATCGACCAAATGTCACAAATGCCTGCATACCATTGCAACAGAGGCAGAGGATATCATTTCATACGGTGTGCAGTGTGAGCAGCAGTCAAAGTGGAGAGCCAAAATAAAATAGGAATTCGTGGAGAAGGGAGGTTCAAAATGCATTGGCTAGCTATAGCTTGGGTGTTGGGTCCCCATGGCGGCCAAAACCACCTCCCTTTCCCAAGAAAGCAGGCGGCTTTTGTGTTTTTACGCCACACAGCTCATGTCTCTAGGATTAGTAGCAGTAGAAAGCTACGCGGAGAGTAGTAGCACTAGTACTAGTAAATGTCACCACGAATATATCAGCTACGTGCTCGACGAAATGCCACTTGGCAATCATCCTCTGCCGTGCAGCTTGTAAATGCAAACACAACTCCAGGCGAATGCCTACGAACAAGGGAACAGGAACGCCACCCCTCTAGTAGCACTAGTACCAGCCCTCCTTCCCCCAGGTGAGGCATTTTCACAAGAAGCGAAGACCATCACTCACCCATGCATATGAATGTGTGATCGTAGTCTCAAGAACATCGGCAATGCCGGAGGGAACACCCAAGATCACCGGATTAGAACAACCAAAAACTTAAAATGGGTAATGCTAAGAAGAAGCAAGTAGCTGAGAGACAAGCCAAGAGCACAGAGCCCACTCACCTCCTGAGAGAGGAGAAGACGCCGCAATGGCACCCCACGAATGTCTCCAGTGGCACCCGCCCAAACCCGAAGTATAAAAAAGAAGCAGCGAGTGTGGCAAAACGCGCAACGCCAGCAAAGGCAAAGCGGTGAAGAGAGAGAGATGGGCAGGCGAGCTCGTGCTACAGCTAGGCCCGGACGCACGCGAGGAGGAAGAAGAAGAGGTTGTGGAGTGGAGTAGACGGGTGTAGGAGTAGTAGTAGGATGGGGGCAGTAGATGGCAATGATACGGAGGAGGGTGGTCGTGCTCCCCTCTTCCCCTTTGCGCCTTTTGCCTTCTCTCTCTTGGTCTTGGCTTCCCAGCCTCTCTCCTGCTGCTGCTGCTGCTGCTGCTGCAGTGTGTGATGCTGCTGACCGCGGCTGCTTTGCGC
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| CDS seq | ATGGCGTCCTCGCAGGAGAAGGCCAAGACGGGTGTTCTGAGAAATGCCGCAGCGCTGCTCGACGAAATGCAGCTCATGGGAGAAACACAGGGTGCCAAGAAGGTGATCAACTCGGAGCTCTGGCACGCTTGTGCCGGGCCGCTTGTGTGCTTGCCGCAGCGGGGGAGCCTCGTGTACTACTTCCCTCAGGGGCACAGTGAACAGGTTGCAGCGACAACTAGAAAGATTCCAAATTCCCGCATTCCGAACTACCCAAACCTGCCATCTCAGTTGCTGTGTCAAGTTCACAACATCACCTTGCATGCCGACAAGGACACTGATGAAGTTTATGCACAGATGACCCTTCAGCCAGTAAACTCTGAAACGGATGTATTCCCTATTCCAACTCTTGGTGCTTATACCAAAAGCAAGCACCCCACTGAATATTTCTGCAAGAATTTAACCGCAAGTGATACGAGTACACATGGTGGTTTCTCGGTGCCACGAAGGGCTGCAGAGAAGTTGTTCCCACAACTGGATTACTCAATGCAACCTCCTAACCAGGAGCTTATTGTTCGAGATTTGCATGATAACATGTGGACATTCCGTCACATTTATCGTGGACAGCCAAAACGACATCTTCTAACAACTGGATGGAGTCTCTTTGTTGGGGCAAAGCGTCTAAAAGCAGGGGACTCTGTCTTATTTATAAGGGATGAGAAGTCACAACTTCTTTTGGGTGTTAGGCGAGCCACGCGACAACAAACAATGTTGTCATCTTCTGTTCTATCTACTGATAGCATGCACATTGGCGTTCTTGCTGCTGCAGCTCATGCCGCATCAAGTGGTAGTTCATTTACTATCTACTACAATCCTAGGACAAGTCCTTCGCCATTTGTAATTCCTGTAGCAAGGTACAACAAGGCAACATATATGCAACCATCAGTTGGAATGAGATTTGCGATGATGTTTGAGACAGAGGAGTCAAGCAAGCGCAGATACACAGGTACAGTTGTGGGAATAAGTGACTACGACCCCATGAGATGGCCCAATTCTAAATGGCGCAACTTACAGGTCGAATGGGATGAACATGGGTATGGAGAAAGACCTGAGCGTGTGAGCATATGGGATATTGAAACTCCAGAAAACACTCTTGTGTTCCCTTCGTCGACCTTGAATTCAAAGCGGCAATGTCTTCCTGGTTATGGAGTTTCAGTGCCTGGGATGGAAATTGGATCAGCAAATATGTCATCATTTCCAAGGGCTCAGGGTAATCCCTATGGCAGTTTGCAGCACATTCCAGCTGTTGGATCAGAATTGGCTATCATGCTTCTCAACCAATCTGGTCAAACCCTTGGGAGTCCCCTTAGTTTTCACCAGTCCTCATATTCTAGTATTATCCAAAATGTGAAGCAAAATTATATCCCTCCTCTAACAGTTAGCACTTCAGCTTGTTTGACAAAGCAAGAAAGCCTGCCTTCAGATGATGCCCAGCACCAGTTCCATATGGCAAATATGCAGAATGGTGATCTTGAAGGCTCTGAAGTCCAGCCTGTCATTGATTCGATTTCTGAGTCAAAGTTGAATGCTACATCAAGAGATCCAAGAAACACAGATTCATACACAAGTCGAAGTACTTCGGAGCAAAACAGTAAGGGTGAGCCTAGAGGCAAGACTCGTAGGAGTAAGAAGGGCTTGCCTCACAAAACCGTTTCAGAGAAATCTGACCTTTCTTCAGCCCCTTCTTGGATCTGTGACAATCAGCAGGTTGGTTTAGAATCGAAACTGGTTGGTTGTGATGAACAAGTAAACTGTGGAAATATTGAAGATTCATCAGGTGCACTTACTCAAGGTAATTTTGTTGGACAGCCGCATGGCCATCAGGTTGAACAAAAGGGAGTGCTGTCGCCACCAAAGGTAGAATCATCAAAATCACCTGATGGAGGAAAGTCTGTCAATTCGTTTCCAAACCAAGGGTGTTTTTCGCAGTTCATTGATGGTCTTGATTGGATGACTCAGCCTTCCTACTACCAAGACTCCAATGTAATTCAACCAGCCGGTGTGTCAGAGAACATTTTCAGTTCTTCTGCAGATATACCTCCCTCAATGATTGCTGATACTATGGAGACTTTTCAGGCTTCATGTCTTTCTGATTGCCTTCCTAATTCCATACAAGAATTCATCTCCAGCCCAGATCTGAATTCACTAACCTTTCTTTCACCTGACATGCAAAATTTGGAGGTCCAACTCCAGCATGATGGAAGCAATTTGCCAAGCACGTCCAACTCGTTTGTACAGATGAGTTTTTCTGAAGAGAGTGCAAGTCAGAGTGCAAACTTAAGTGGACTTCACATGGAATCTACACACAGAAGCATAAACACCACTTCATGCTCTCAACCAATGTCTACTGGGGGCTTTGATGCAGGGATGTACTCAAAGTTGCCACGTTTAAAAGAATCCCAAATCTTGTCTTTGCCAGAGATTCATACCAATTCCATGGGAACATCAGCTTGCAGTATGGATGCAACCGAGTACAGCCTTGACCGAAGTGCGAAGCCGATGAAACCACCAGTGCGGACATATACAAAGGTTCAAAAGCAAGGATCAGTTGGAAGATCTATCGATGTTACAGGGTTTAGAAATTACCATGAGTTGAGATCTGCCATCGCTTGCATGTTTGGTCTCCAGGGGAAATTGGAGCATCCTGGCAGTTCAGAGTGGAAGCTTGTATATGTCGACTACGAAAATGATGTTCTTCTTGTCGGAGATGATCCATGGGAGGAATTCATCAACTGTGTCCGGTGCATCCGGATTTTGTCACCTTCAGAAGTACAACAGATGAGCGAGAATGGCATGCATGTTTTGAACGACTGTATTCAAGCAGCTTAG
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| Protein seq | MASSQEKAKTGVLRNAAALLDEMQLMGETQGAKKVINSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRDEKSQLLLGVRRATRQQTMLSSSVLSTDSMHIGVLAAAAHAASSGSSFTIYYNPRTSPSPFVIPVARYNKATYMQPSVGMRFAMMFETEESSKRRYTGTVVGISDYDPMRWPNSKWRNLQVEWDEHGYGERPERVSIWDIETPENTLVFPSSTLNSKRQCLPGYGVSVPGMEIGSANMSSFPRAQGNPYGSLQHIPAVGSELAIMLLNQSGQTLGSPLSFHQSSYSSIIQNVKQNYIPPLTVSTSACLTKQESLPSDDAQHQFHMANMQNGDLEGSEVQPVIDSISESKLNATSRDPRNTDSYTSRSTSEQNSKGEPRGKTRRSKKGLPHKTVSEKSDLSSAPSWICDNQQVGLESKLVGCDEQVNCGNIEDSSGALTQGNFVGQPHGHQVEQKGVLSPPKVESSKSPDGGKSVNSFPNQGCFSQFIDGLDWMTQPSYYQDSNVIQPAGVSENIFSSSADIPPSMIADTMETFQASCLSDCLPNSIQEFISSPDLNSLTFLSPDMQNLEVQLQHDGSNLPSTSNSFVQMSFSEESASQSANLSGLHMESTHRSINTTSCSQPMSTGGFDAGMYSKLPRLKESQILSLPEIHTNSMGTSACSMDATEYSLDRSAKPMKPPVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGMHVLNDCIQAA |
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| Function | Auxin response factor 11 [UniProtKB/Swiss-Prot:Q8S983] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g56850 | LOC_Os04g56850.1 | Chr04 | 33888004 | 33894393 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGTCCTCGCAGGAGAAGGCCAAGACGGGTGTTCTGAGAAATGCCGCAGCGCTGCTCGACGAAATGCAGCTCATGGGAGAAACACAGGGTGCCAAGAAGGTGATCAACTCGGAGCTCTGGCACGCTTGTGCCGGGCCGCTTGTGTGCTTGCCGCAGCGGGGGAGCCTCGTGTACTACTTCCCTCAGGGGCACAGTGAACAGGTTGCAGCGACAACTAGAAAGATTCCAAATTCCCGCATTCCGAACTACCCAAACCTGCCATCTCAGTTGCTGTGTCAAGTTCACAACATCACCTTGCATGCCGACAAGGACACTGATGAAGTTTATGCACAGATGACCCTTCAGCCAGTAAACTCTGAAACGGATGTATTCCCTATTCCAACTCTTGGTGCTTATACCAAAAGCAAGCACCCCACTGAATATTTCTGCAAGAATTTAACCGCAAGTGATACGAGTACACATGGTGGTTTCTCGGTGCCACGAAGGGCTGCAGAGAAGTTGTTCCCACAACTGGATTACTCAATGCAACCTCCTAACCAGGAGCTTATTGTTCGAGATTTGCATGATAACATGTGGACATTCCGTCACATTTATCGTGGACAGCCAAAACGACATCTTCTAACAACTGGATGGAGTCTCTTTGTTGGGGCAAAGCGTCTAAAAGCAGGGGACTCTGTCTTATTTATAAGGGATGAGAAGTCACAACTTCTTTTGGGTGTTAGGCGAGCCACGCGACAACAAACAATGTTGTCATCTTCTGTTCTATCTACTGATAGCATGCACATTGGCGTTCTTGCTGCTGCAGCTCATGCCGCATCAAGTGGTAGTTCATTTACTATCTACTACAATCCTAGGACAAGTCCTTCGCCATTTGTAATTCCTGTAGCAAGGTACAACAAGGCAACATATATGCAACCATCAGTTGGAATGAGATTTGCGATGATGTTTGAGACAGAGGAGTCAAGCAAGCGCAGATACACAGGTACAGTTGTGGGAATAAGTGACTACGACCCCATGAGATGGCCCAATTCTAAATGGCGCAACTTACAGGTCGAATGGGATGAACATGGGTATGGAGAAAGACCTGAGCGTGTGAGCATATGGGATATTGAAACTCCAGAAAACACTCTTGTGTTCCCTTCGTCGACCTTGAATTCAAAGCGGCAATGTCTTCCTGGTTATGGAGTTTCAGTGCCTGGGATGGAAATTGGATCAGCAAATATGTCATCATTTCCAAGGGCTCAGGGTAATCCCTATGGCAGTTTGCAGCACATTCCAGCTGTTGGATCAGAATTGGCTATCATGCTTCTCAACCAATCTGGTCAAACCCTTGGGAGTCCCCTTAGTTTTCACCAGTCCTCATATTCTAGTATTATCCAAAATGTGAAGCAAAATTATATCCCTCCTCTAACAGTTAGCACTTCAGCTTGTTTGACAAAGCAAGAAAGCCTGCCTTCAGATGATGCCCAGCACCAGTTCCATATGGCAAATATGCAGAATGGTGATCTTGAAGGCTCTGAAGTCCAGCCTGTCATTGATTCGATTTCTGAGTCAAAGTTGAATGCTACATCAAGAGATCCAAGAAACACAGATTCATACACAAGTCGAAGTACTTCGGAGCAAAACAGTAAGGGTGAGCCTAGAGGCAAGACTCGTAGGAGTAAGAAGGGCTTGCCTCACAAAACCGTTTCAGAGAAATCTGACCTTTCTTCAGCCCCTTCTTGGATCTGTGACAATCAGCAGGTTGGTTTAGAATCGAAACTGGTTGGTTGTGATGAACAAGTAAACTGTGGAAATATTGAAGATTCATCAGGTGCACTTACTCAAGGTAATTTTGTTGGACAGCCGCATGGCCATCAGGTTGAACAAAAGGGAGTGCTGTCGCCACCAAAGGTAGAATCATCAAAATCACCTGATGGAGGAAAGTCTGTCAATTCGTTTCCAAACCAAGGGTGTTTTTCGCAGTTCATTGATGGTCTTGATTGGATGACTCAGCCTTCCTACTACCAAGACTCCAATGTAATTCAACCAGCCGGTGTGTCAGAGAACATTTTCAGTTCTTCTGCAGATATACCTCCCTCAATGATTGCTGATACTATGGAGACTTTTCAGGCTTCATGTCTTTCTGATTGCCTTCCTAATTCCATACAAGAATTCATCTCCAGCCCAGATCTGAATTCACTAACCTTTCTTTCACCTGACATGCAAAATTTGGAGGTCCAACTCCAGCATGATGGAAGCAATTTGCCAAGCACGTCCAACTCGTTTGTACAGATGAGTTTTTCTGAAGAGAGTGCAAGTCAGAGTGCAAACTTAAGTGGACTTCACATGGAATCTACACACAGAAGCATAAACACCACTTCATGCTCTCAACCAATGTCTACTGGGGGCTTTGATGCAGGGATGTACTCAAAGTTGCCACGTTTAAAAGAATCCCAAATCTTGTCTTTGCCAGAGATTCATACCAATTCCATGGGAACATCAGCTTGCAGTATGGATGCAACCGAGTACAGCCTTGACCGAAGTGCGAAGCCGATGAAACCACCAGTGCGGACATATACAAAGGTTCAAAAGCAAGGATCAGTTGGAAGATCTATCGATGTTACAGGGTTTAGAAATTACCATGAGTTGAGATCTGCCATCGCTTGCATGTTTGGTCTCCAGGGGAAATTGGAGCATCCTGGCAGTTCAGAGTGGAAGCTTGTATATGTCGACTACGAAAATGATGTTCTTCTTGTCGGAGATGATCCATGGGAGGAATTCATCAACTGTGTCCGGTGCATCCGGATTTTGTCACCTTCAGAAGTACAACAGATGAGCGAGAATGGCATGCATGTTTTGAACGACTGTATTCAAGCAGCTTAG
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| Protein seq | MASSQEKAKTGVLRNAAALLDEMQLMGETQGAKKVINSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRDEKSQLLLGVRRATRQQTMLSSSVLSTDSMHIGVLAAAAHAASSGSSFTIYYNPRTSPSPFVIPVARYNKATYMQPSVGMRFAMMFETEESSKRRYTGTVVGISDYDPMRWPNSKWRNLQVEWDEHGYGERPERVSIWDIETPENTLVFPSSTLNSKRQCLPGYGVSVPGMEIGSANMSSFPRAQGNPYGSLQHIPAVGSELAIMLLNQSGQTLGSPLSFHQSSYSSIIQNVKQNYIPPLTVSTSACLTKQESLPSDDAQHQFHMANMQNGDLEGSEVQPVIDSISESKLNATSRDPRNTDSYTSRSTSEQNSKGEPRGKTRRSKKGLPHKTVSEKSDLSSAPSWICDNQQVGLESKLVGCDEQVNCGNIEDSSGALTQGNFVGQPHGHQVEQKGVLSPPKVESSKSPDGGKSVNSFPNQGCFSQFIDGLDWMTQPSYYQDSNVIQPAGVSENIFSSSADIPPSMIADTMETFQASCLSDCLPNSIQEFISSPDLNSLTFLSPDMQNLEVQLQHDGSNLPSTSNSFVQMSFSEESASQSANLSGLHMESTHRSINTTSCSQPMSTGGFDAGMYSKLPRLKESQILSLPEIHTNSMGTSACSMDATEYSLDRSAKPMKPPVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGMHVLNDCIQAA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g56850 | LOC_Os04g56850.2 | Chr04 | 33888004 | 33894393 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGTCCTCGCAGGAGAAGGCCAAGACGGGTGTTCTGAGAAATGCCGCAGCGCTGCTCGACGAAATGCAGCTCATGGGAGAAACACAGGGTGCCAAGAAGGTGATCAACTCGGAGCTCTGGCACGCTTGTGCCGGGCCGCTTGTGTGCTTGCCGCAGCGGGGGAGCCTCGTGTACTACTTCCCTCAGGGGCACAGTGAACAGGTTGCAGCGACAACTAGAAAGATTCCAAATTCCCGCATTCCGAACTACCCAAACCTGCCATCTCAGTTGCTGTGTCAAGTTCACAACATCACCTTGCATGCCGACAAGGACACTGATGAAGTTTATGCACAGATGACCCTTCAGCCAGTAAACTCTGAAACGGATGTATTCCCTATTCCAACTCTTGGTGCTTATACCAAAAGCAAGCACCCCACTGAATATTTCTGCAAGAATTTAACCGCAAGTGATACGAGTACACATGGTGGTTTCTCGGTGCCACGAAGGGCTGCAGAGAAGTTGTTCCCACAACTGGATTACTCAATGCAACCTCCTAACCAGGAGCTTATTGTTCGAGATTTGCATGATAACATGTGGACATTCCGTCACATTTATCGTGGACAGCCAAAACGACATCTTCTAACAACTGGATGGAGTCTCTTTGTTGGGGCAAAGCGTCTAAAAGCAGGGGACTCTGTCTTATTTATAAGGGATGAGAAGTCACAACTTCTTTTGGGTGTTAGGCGAGCCACGCGACAACAAACAATGTTGTCATCTTCTGTTCTATCTACTGATAGCATGCACATTGGCGTTCTTGCTGCTGCAGCTCATGCCGCATCAAGTGGTAGTTCATTTACTATCTACTACAATCCTAGGACAAGTCCTTCGCCATTTGTAATTCCTGTAGCAAGGTACAACAAGGCAACATATATGCAACCATCAGTTGGAATGAGATTTGCGATGATGTTTGAGACAGAGGAGTCAAGCAAGCGCAGATACACAGGTACAGTTGTGGGAATAAGTGACTACGACCCCATGAGATGGCCCAATTCTAAATGGCGCAACTTACAGGTCGAATGGGATGAACATGGGTATGGAGAAAGACCTGAGCGTGTGAGCATATGGGATATTGAAACTCCAGAAAACACTCTTGTGTTCCCTTCGTCGACCTTGAATTCAAAGCGGCAATGTCTTCCTGGTTATGGAGTTTCAGTGCCTGGGATGGAAATTGGATCAGCAAATATGTCATCATTTCCAAGGGCTCAGGGTAATCCCTATGGCAGTTTGCAGCACATTCCAGCTGTTGGATCAGAATTGGCTATCATGCTTCTCAACCAATCTGGTCAAACCCTTGGGAGTCCCCTTAGTTTTCACCAGTCCTCATATTCTAGTATTATCCAAAATGTGAAGCAAAATTATATCCCTCCTCTAACAGTTAGCACTTCAGCTTGTTTGACAAAGCAAGAAAGCCTGCCTTCAGATGATGCCCAGCACCAGTTCCATATGGCAAATATGCAGAATGGTGATCTTGAAGGCTCTGAAGTCCAGCCTGTCATTGATTCGATTTCTGAGTCAAAGTTGAATGCTACATCAAGAGATCCAAGAAACACAGATTCATACACAAGTCGAAGTACTTCGGAGCAAAACAGTAAGGGTGAGCCTAGAGGCAAGACTCGTAGGAGTAAGAAGGGCTTGCCTCACAAAACCGTTTCAGAGAAATCTGACCTTTCTTCAGCCCCTTCTTGGATCTGTGACAATCAGCAGGTTGGTTTAGAATCGAAACTGGTTGGTTGTGATGAACAAGTAAACTGTGGAAATATTGAAGATTCATCAGGTGCACTTACTCAAGGTAATTTTGTTGGACAGCCGCATGGCCATCAGGTTGAACAAAAGGGAGTGCTGTCGCCACCAAAGGTAGAATCATCAAAATCACCTGATGGAGGAAAGTCTGTCAATTCGTTTCCAAACCAAGGGTGTTTTTCGCAGTTCATTGATGGTCTTGATTGGATGACTCAGCCTTCCTACTACCAAGACTCCAATGTAATTCAACCAGCCGGTGTGTCAGAGAACATTTTCAGTTCTTCTGCAGATATACCTCCCTCAATGATTGCTGATACTATGGAGACTTTTCAGGCTTCATGTCTTTCTGATTGCCTTCCTAATTCCATACAAGAATTCATCTCCAGCCCAGATCTGAATTCACTAACCTTTCTTTCACCTGACATGCAAAATTTGGAGGTCCAACTCCAGCATGATGGAAGCAATTTGCCAAGCACGTCCAACTCGTTTGTACAGATGAGTTTTTCTGAAGAGAGTGCAAGTCAGAGTGCAAACTTAAGTGGACTTCACATGGAATCTACACACAGAAGCATAAACACCACTTCATGCTCTCAACCAATGTCTACTGGGGGCTTTGATGCAGGGATGTACTCAAAGTTGCCACGTTTAAAAGAATCCCAAATCTTGTCTTTGCCAGAGATTCATACCAATTCCATGGGAACATCAGCTTGCAGTATGGATGCAACCGAGTACAGCCTTGACCGAAGTGCGAAGCCGATGAAACCACCAGTGCGGACATATACAAAGGTTCAAAAGCAAGGATCAGTTGGAAGATCTATCGATGTTACAGGGTTTAGAAATTACCATGAGTTGAGATCTGCCATCGCTTGCATGTTTGGTCTCCAGGGGAAATTGGAGCATCCTGGCAGTTCAGAGTGGAAGCTTGTATATGTCGACTACGAAAATGATGTTCTTCTTGTCGGAGATGATCCATGGGAGTAA
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| Protein seq | MASSQEKAKTGVLRNAAALLDEMQLMGETQGAKKVINSELWHACAGPLVCLPQRGSLVYYFPQGHSEQVAATTRKIPNSRIPNYPNLPSQLLCQVHNITLHADKDTDEVYAQMTLQPVNSETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPNQELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRDEKSQLLLGVRRATRQQTMLSSSVLSTDSMHIGVLAAAAHAASSGSSFTIYYNPRTSPSPFVIPVARYNKATYMQPSVGMRFAMMFETEESSKRRYTGTVVGISDYDPMRWPNSKWRNLQVEWDEHGYGERPERVSIWDIETPENTLVFPSSTLNSKRQCLPGYGVSVPGMEIGSANMSSFPRAQGNPYGSLQHIPAVGSELAIMLLNQSGQTLGSPLSFHQSSYSSIIQNVKQNYIPPLTVSTSACLTKQESLPSDDAQHQFHMANMQNGDLEGSEVQPVIDSISESKLNATSRDPRNTDSYTSRSTSEQNSKGEPRGKTRRSKKGLPHKTVSEKSDLSSAPSWICDNQQVGLESKLVGCDEQVNCGNIEDSSGALTQGNFVGQPHGHQVEQKGVLSPPKVESSKSPDGGKSVNSFPNQGCFSQFIDGLDWMTQPSYYQDSNVIQPAGVSENIFSSSADIPPSMIADTMETFQASCLSDCLPNSIQEFISSPDLNSLTFLSPDMQNLEVQLQHDGSNLPSTSNSFVQMSFSEESASQSANLSGLHMESTHRSINTTSCSQPMSTGGFDAGMYSKLPRLKESQILSLPEIHTNSMGTSACSMDATEYSLDRSAKPMKPPVRTYTKVQKQGSVGRSIDVTGFRNYHELRSAIACMFGLQGKLEHPGSSEWKLVYVDYENDVLLVGDDPWE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0664400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0664400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0030000 | RBH | 0.0 | 1.704427 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0030770 | RBH | 0.0 | 0.546627 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0030340 | RBH | 0.0 | 0.000000 | 0.505264 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0030170 | RBH | 0.0 | 0.015325 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0030430 | RBH | 0.0 | 0.000000 | 0.881339 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0534000 | RBH | 0.8754285 | 1.261232 | 11.4775485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0029080 | RBH | 0.0 | 0.000000 | 0.032020 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0538800 | RBH | 1.143685 | 0.350935 | 24.6880325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0029510 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0029360 | RBH | 0.0 | 0.784890 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0029480 | RBH | 0.0 | 1.640492 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0030030 | RBH | 0.000000 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0030040 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G029480 | RBH | 0.0 | 0.231080 | 0.276573 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0029250 | RBH | 0.0 | 2.458366 | 0.000000 |
