Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g56750 | OGI:04099260 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:33848611-33853994 | ||||||||
| Gene Symbol | C3H30, OsC3H30 | ||||||||||
| DNA seq | TTAGTGAATTCAGAACAAGATATCGAGCTCGAACTTGATTCAGTAAAAATTTGAGCACCAATCAATCATGAAATATTTTGCTTTCTTTCAGAACATCTCCTCTCCTCGACGAACATAAAAAAGGAGGCTAATGGAAGAGCTAACGGAGTAATATTTACTGATCCATGATAGATGAACCAAAGAACAGTCAAAAATTAAATGGCGGCTTCAGCTCAATTTCGACCGCCCATTGTGTTGTCTAATTTTATCCTTTTTGATCCCTTTTGCTTCTGATGATCTTTTCTTGTTGGGGCTGACGCATCATGTAGGAATGTGCAACTAGCACCATTTCGACAACCCTTCGGGCTGTTAAAGTATGCACACGGTTTCATCGGCCTCACCTTGCCATCTCTGCTCACCATAGCAGCAGCACCGTTCATGGCATCAATACCGCCATTTTGTGGAGGACCAGGTTGGCGGTACATACCAAACTGCATTCCATGCTGCTCAAATGGTTGTTCCAGTCTCTCCCCTCCATGCTGATGGATGAGGGTTTTATAATAGCCGACACCCCTCCCTGGAACACTTCCAAAGTTCACTGATGGGCTTGAACTTGGCAGGGCACTTCCAAAGTTCATTGCTGGGCTTGAACTTGGTGGATGATTCATAGCAACTGAAGGAATGGTTGAAGGTGGCCGATTCATCATTGGTGGTGGAGGCGGCAGGGTAGGATTCATGCCATGAAAGGTTCCGACATGATCAGAGAAGGGGGCAGGAGAGCTTGCAGTTATTTGGGGTGGTGGGATTGATACCAATGGGGCAACAACAGAACTACTAGCTGATTGTTCATGTCTGACTGGGCCACATTCTTTCATTAACCTCTGAAGCTGTGAAGGATCACTTAGTATTTTGAAGAGTAGTTCCTGGTCAATCGTGCTCCCGTTTTGGTCAGCCATGCTCCCATTTTGATTACTCTGTATGGTTTGCATAATTGCAGTGACTGTTGCTGAGACTGCAGCCTGAGGCTCAATGGTGAATCCAGAACTTATAGCACCACCACATGGTGGTTGTTGCTCAGCGGAAACAGGAGTATTTGAAACTCCTGTTATGTTGTAATGGCTTGGTAGATCAAGGGTTGGTCCTTCCAATTGATCAGATGCATCATCATCTTCAAGAGGGATCAAAGGAACCAACAGGGTTTTGGAATCGTCATAATGGGCATCTTTCACATCAAGAGAAAGAAATGGGCTGGATTGGCACACAAAAAAATCATTATAAAAAATGGTATGTGACATCTGAAGAACTTGTAATGAAAAAAAAGGAGCTTGCTTACTTTGGCGGAATGTTCGATGGACGTGGGTAAATTGCCTCAAGCGCTCCATTTATTCTCTCATTTTGAATTTCAATCTCCCTACTTTCTTCTCCAGCAACAATATGCCAATCCTGCTCCAATACTATCTGCAATCAAGAGAGTGTTGGGAATTTCAGTAATCTTTGAACTTGTCTTGCTATTGTCCAACACAACAGTAACTGTGAGCCTTACATGTGGGGGGCATTTCCACCTAATTAGGGGGATTTGAGACATGTCAATTTTGAGGTCATTGCTTGGCGGCAATGACTCAAAGCCTGGAGGCAAGGAATCATCTGAGCTTGGGCCAGCTGCATGCAGTAACCATGAGCCTTTTGCTTGGAGATTATCCTGCGGTCTTAATCCAGCTTGAGAGGGGGAATCCTCTGACAGGAAAAGCCTTACCTGACACAAACACATGATACAAGGTTGTTCAGTATTTATAATTTATTACAATGCTTTAGTGACACAAGAAACATTAAACGAGACAATCAAGTCCGAAGAACATGGGCAATAAGATGATTCACTATCATGAAGCATTCTGTGAGCCAAATAACAAATTTGAAGAACTTGGTCATCGTATCATCAAAAGGGCTATAATGCTGGGTGATAAAAACTTCAGCTCAGATTAAATTTAATCTTCTGCTGACTACCAAAATGTATAGTTCAATGAAGTCTCAAAAAAGAATAATTTTTTTAGGAGGGTTCACAATGTTAAGGCATGATAACAGTTTGTGACAGACATTAACCTCAAACAAAGCAAGGAGCTAGTTTCTATCCAATGTTCTTTTTTCTTTTTTGAAAGAACTCCATCCAATGTTCAATCACTTGCTTAGCACCTACCTGCCTCCAGGATAGTTAAAACCATTCTTTATTATCCAGTAAAATAAAAGGATTGTTTAATACCTTCATGCCACTTTTATATATCTTATATGCCTATCCAAGACAAGATGAAAAGAAACAAGAACTAAACCCTTCCTCTTCAATGCCATTTCAGGGCTACTTCAGCAGTTCAACTATTTATTCTTTTAATTTTCCTAACATACATTCTAACAGCCGGCAGATTGCAGCTTGTATGAATCCACAAAACACAATTGCTGACTAGTTTTAAGATGTTTCTTAACAGAAGACTATGACCATCCTTCAAAATTCTAGAACACCAATAAAAATCTCTTACAATTAATACCATCTTACTATTGATCATTTATTCAAAGTACTACTAAACCATCAGCCAAATTTTATTCCCGCAATCTGTACAATTTAAACACTCAAGGCCAATGTGAAGTGCTAAAATCAACTTTCAGATAATATATACATGATTTGACACGTTGTATATGCAAATCCATATTAACTTCTTAGATTTCACAGTCCATAACATATCAGCTACCAGGCACCAGCAATCAAGATTCGAGGAAAGTACTTCATTCAGTCCTATGTAAATCTGCAACTAACATGTCATCTCACAAACAGGATACTTAAGATATGAATACCAATTTAGCTGTTCATTAGCTGGATTGGCAGTAGGAATATTTTGTTCACATTGTTGATCCATTTAAAAAACAACAATGAATACCATTATAGCACGAAGAAAGAAAGGTGCACGTGCAAGGGGAAAAGGAGTGTTGTATTGGTGATATGGATGCACTTTCATACGGTTGTCAGTTATCCGTCCATACGTACAAAAAGGATATGAGTGGAACAAGGAGTCAACTCTGGACTTATCACAACATAGCATAAGGATGAGTGGAACAAGGAGCCAACTCTGGACTCTGGACTTATCACAACATAGCATGGTATTGATATCACTAAAAAAAATACTGGTGATATAACAATCATGGAAGCAACATGCATGTGTGATTACATATATATAGACGTGGCCTTTGAAGGATGCTTACTGCATATGCTGATTACTTGGTTTCGGTGAAATAAATGCTTTAGTATCTCATGAGCTTATTGTGAATTGCTGAATAAATTAGAGATTATTGTGAATTGCTGAATCAATTAGAGATCACTCTTTGTACTTCAAAGCAAAAAAAGGTTGAGATGAATCATATAACTCATAGAATATTTGTTTCATGTCTTACTTTCATCCTTTAAAGTCATGTGTTAACAAGTGATATAAGCTCCACATAGCTTAATATGTTAAAAATGATATATTGGTCATTAAGTTCTATAGGACACTTTGAATTGAATCATCAAAGTTTATTAGAGTCATTAATGGCAGGAAATGGTCAAAATGAGACGAAGCGAGATAGCCTGATTAAATGTTTACATTACTTTTAAGTGTAGTGCTACAGTTCAATTCTTGATCCCAAAATGAAGCACAATCCTGATTAAATGTTTACATTACTATTGAGTGTAGTGCTACAGTTCAATTCTTGAGCCCAAAATGAAGCACAATCCAATATATTATACCATAAACAGCCATACTTTTGAATTATTTTTGTTTGTATCCTATTAACACATTAGAACATCCTTTAGATTAGGTTTTAATATATAAAAGTTAACAATTTGAACCTAGACAACAGTCACATGCTTCAAATTAACATTGCTTGTGTTTCATCCCAATATATGACAATTCTGAAATATATGTAATGCCTAGTCAATTAAAGGTAAAAAAAAAAGTAAAAAAAATCCAGCATTTTTTGCAAGCTAAACAATTCATGGTATTCGAGTTATAGAGGGTAAATAATGAGACATTTCTCAAATACACGTCCTATCATGCATACTGATGTGTCAGAGACATGACCTGCTTTGCATCAGGTGTCTATTGAAAATCTAAGCCCCAATCTCATTCGGTGTCTATTGAAAATCTAAGCCCCAAACTCATTCGGTGTCTATTGAAAATCTAAGCCCCAAATTCATTCATATTTAGGGCAGTGCTTGCTGCCTGCTAGGGCATAAAATTCAGCATTACATGTGAACACTAACAGAAGTTGGTATAGACCTATGGAATAAAAATTATAAAAAACCTAAGACGAAAATTGTGAACAAATGCCATTTAAAATTATCTGGCTATACAATTTGAATAGAATCTTAAAGCATGCAGTCCTTCCACTCAAGAATATGAAAAAAAAAAGATTCTTTGGTACATAATTTTCTAGATGAAGATCAAATGGCTAAATCTTGCTTCACCGATGGGACATATTTTGTCCCCAAAAGAATGATACACCAATGGGACATATTCCCCAAAAGAATGATAGTTTACATGCACCAGGTATCATGTTGTTATCGTCCTTTTTGTTTCATTATCTGCGTATTAATTGTGGTTCGGTACTGATATTTGCTGGGGGTTCCCCCATCTTTTTTTCGCTGCAAATTCAGCATAGAAATTCTGCATCATTGGCAGAATGAAATCCATCTCAGTCGATTCTTCTGCTCATGGATTTGCAAACTGAGAATAGCATGTTCGTTTTTTTTGTAAGCATTCACACATTTACCACTGAAAAAAAATTGAGAGATCGTATTTGATCGTATTTTTCGCGGAGTTTGAACAAAAGGCGACTAAATCAAAAAGCAAATCAAGGGTAGAAAGCGAGCTAGCAGAGCAAAACAATCTCCAACGAATGCACTGCACGGAGACGATGCAAATCTCCGCAACAAAACTGGGAGATACAGGATAAGCGAATCCGTCTCCTCGCCGTGGCGGTGGCAAGTTTTTATCACAGTACCTTGCAGAGATTGCCTCCGGAGGCCCATGAAACGCGCCTGGATCGCCTCGACCCCATCATTACTCTCCAAACCCAAGCAACCAATCCGAACCGATCCGATCTACAGCGCGGGAAACCCTAGATAGGGTGGGGCGGGCGATCGACGGACGGACGAACGAGCGGAAAAGCCGGCGGCGGGTTCCCGACCCCGAGATCGGGACGGTTTGGGGTTTCCTCCTGCTTCTCCCCACTCCCTCCCTCGCCGTCGCTCCGGTGGCGGCGGCGGCGGCGCAAGCGGAGCGGCCGAGGGGAGGGTTGGATTTGGAGCGGAAGAGGGACGGGAGGTGGTGAGGCGGATGGGCTGGCTCTCGCGTCGGCGGCTTTGCCCTTATTTCTTCGCGTCGATT
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| CDS seq | ATGATGGGGTCGAGGCGATCCAGGCGCGTTTCATGGGCCTCCGGAGGCAATCTCTGCAAGGTAAGGCTTTTCCTGTCAGAGGATTCCCCCTCTCAAGCTGGATTAAGACCGCAGGATAATCTCCAAGCAAAAGGCTCATGGTTACTGCATGCAGCTGGCCCAAGCTCAGATGATTCCTTGCCTCCAGGCTTTGAGTCATTGCCGCCAAGCAATGACCTCAAAATTGACATGTCTCAAATCCCCCTAATTAGGTGGAAATGCCCCCCACATATAGTATTGGAGCAGGATTGGCATATTGTTGCTGGAGAAGAAAGTAGGGAGATTGAAATTCAAAATGAGAGAATAAATGGAGCGCTTGAGGCAATTTACCCACGTCCATCGAACATTCCGCCAAACCCATTTCTTTCTCTTGATGTGAAAGATGCCCATTATGACGATTCCAAAACCCTGTTGGTTCCTTTGATCCCTCTTGAAGATGATGATGCATCTGATCAATTGGAAGGACCAACCCTTGATCTACCAAGCCATTACAACATAACAGGAGTTTCAAATACTCCTGTTTCCGCTGAGCAACAACCACCATGTGGTGGTGCTATAAGTTCTGGATTCACCATTGAGCCTCAGGCTGCAGTCTCAGCAACAGTCACTGCAATTATGCAAACCATACAGAGTAATCAAAATGGGAGCATGGCTGACCAAAACGGGAGCACGATTGACCAGGAACTACTCTTCAAAATACTAAGTGATCCTTCACAGCTTCAGAGGTTAATGAAAGAATGTGGCCCAGTCAGACATGAACAATCAGCTAGTAGTTCTGTTGTTGCCCCATTGGTATCAATCCCACCACCCCAAATAACTGCAAGCTCTCCTGCCCCCTTCTCTGATCATGTCGGAACCTTTCATGGCATGAATCCTACCCTGCCGCCTCCACCACCAATGATGAATCGGCCACCTTCAACCATTCCTTCAGTTGCTATGAATCATCCACCAAGTTCAAGCCCAGCAATGAACTTTGGAAGTGCCCTGCCAAGTTCAAGCCCATCAGTGAACTTTGGAAGTGTTCCAGGGAGGGGTGTCGGCTATTATAAAACCCTCATCCATCAGCATGGAGGGGAGAGACTGGAACAACCATTTGAGCAGCATGGAATGCAGTTTGGTATGTACCGCCAACCTGGTCCTCCACAAAATGGCGGTATTGATGCCATGAACGGTGCTGCTGCTATGGTGAGCAGAGATGGCAAGGTGAGGCCGATGAAACCGTGTGCATACTTTAACAGCCCGAAGGGTTGTCGAAATGGTGCTAGTTGCACATTCCTACATGATGCGTCAGCCCCAACAAGAAAAGATCATCAGAAGCAAAAGGGATCAAAAAGGATAAAATTAGACAACACAATGGGCGGTCGAAATTGA
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| Protein seq | MMGSRRSRRVSWASGGNLCKVRLFLSEDSPSQAGLRPQDNLQAKGSWLLHAAGPSSDDSLPPGFESLPPSNDLKIDMSQIPLIRWKCPPHIVLEQDWHIVAGEESREIEIQNERINGALEAIYPRPSNIPPNPFLSLDVKDAHYDDSKTLLVPLIPLEDDDASDQLEGPTLDLPSHYNITGVSNTPVSAEQQPPCGGAISSGFTIEPQAAVSATVTAIMQTIQSNQNGSMADQNGSTIDQELLFKILSDPSQLQRLMKECGPVRHEQSASSSVVAPLVSIPPPQITASSPAPFSDHVGTFHGMNPTLPPPPPMMNRPPSTIPSVAMNHPPSSSPAMNFGSALPSSSPSVNFGSVPGRGVGYYKTLIHQHGGERLEQPFEQHGMQFGMYRQPGPPQNGGIDAMNGAAAMVSRDGKVRPMKPCAYFNSPKGCRNGASCTFLHDASAPTRKDHQKQKGSKRIKLDNTMGGRN |
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| Function | Zinc finger CCCH domain-containing protein 30 [UniProtKB/Swiss-Prot:Q7XM16] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g56750 | LOC_Os04g56750.1 | Chr04 | 33848611 | 33853994 | - | MSU_osa1r7 | ||
| CDS seq | ATGATGGGGTCGAGGCGATCCAGGCGCGTTTCATGGGCCTCCGGAGGCAATCTCTGCAAGGTAAGGCTTTTCCTGTCAGAGGATTCCCCCTCTCAAGCTGGATTAAGACCGCAGGATAATCTCCAAGCAAAAGGCTCATGGTTACTGCATGCAGCTGGCCCAAGCTCAGATGATTCCTTGCCTCCAGGCTTTGAGTCATTGCCGCCAAGCAATGACCTCAAAATTGACATGTCTCAAATCCCCCTAATTAGGTGGAAATGCCCCCCACATATAGTATTGGAGCAGGATTGGCATATTGTTGCTGGAGAAGAAAGTAGGGAGATTGAAATTCAAAATGAGAGAATAAATGGAGCGCTTGAGGCAATTTACCCACGTCCATCGAACATTCCGCCAAACCCATTTCTTTCTCTTGATGTGAAAGATGCCCATTATGACGATTCCAAAACCCTGTTGGTTCCTTTGATCCCTCTTGAAGATGATGATGCATCTGATCAATTGGAAGGACCAACCCTTGATCTACCAAGCCATTACAACATAACAGGAGTTTCAAATACTCCTGTTTCCGCTGAGCAACAACCACCATGTGGTGGTGCTATAAGTTCTGGATTCACCATTGAGCCTCAGGCTGCAGTCTCAGCAACAGTCACTGCAATTATGCAAACCATACAGAGTAATCAAAATGGGAGCATGGCTGACCAAAACGGGAGCACGATTGACCAGGAACTACTCTTCAAAATACTAAGTGATCCTTCACAGCTTCAGAGGTTAATGAAAGAATGTGGCCCAGTCAGACATGAACAATCAGCTAGTAGTTCTGTTGTTGCCCCATTGGTATCAATCCCACCACCCCAAATAACTGCAAGCTCTCCTGCCCCCTTCTCTGATCATGTCGGAACCTTTCATGGCATGAATCCTACCCTGCCGCCTCCACCACCAATGATGAATCGGCCACCTTCAACCATTCCTTCAGTTGCTATGAATCATCCACCAAGTTCAAGCCCAGCAATGAACTTTGGAAGTGCCCTGCCAAGTTCAAGCCCATCAGTGAACTTTGGAAGTGTTCCAGGGAGGGGTGTCGGCTATTATAAAACCCTCATCCATCAGCATGGAGGGGAGAGACTGGAACAACCATTTGAGCAGCATGGAATGCAGTTTGGTATGTACCGCCAACCTGGTCCTCCACAAAATGGCGGTATTGATGCCATGAACGGTGCTGCTGCTATGGTGAGCAGAGATGGCAAGGTGAGGCCGATGAAACCGTGTGCATACTTTAACAGCCCGAAGGGTTGTCGAAATGGTGCTAGTTGCACATTCCTACATGATGCGTCAGCCCCAACAAGAAAAGATCATCAGAAGCAAAAGGGATCAAAAAGGATAAAATTAGACAACACAATGGGCGGTCGAAATTGA
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| Protein seq | MMGSRRSRRVSWASGGNLCKVRLFLSEDSPSQAGLRPQDNLQAKGSWLLHAAGPSSDDSLPPGFESLPPSNDLKIDMSQIPLIRWKCPPHIVLEQDWHIVAGEESREIEIQNERINGALEAIYPRPSNIPPNPFLSLDVKDAHYDDSKTLLVPLIPLEDDDASDQLEGPTLDLPSHYNITGVSNTPVSAEQQPPCGGAISSGFTIEPQAAVSATVTAIMQTIQSNQNGSMADQNGSTIDQELLFKILSDPSQLQRLMKECGPVRHEQSASSSVVAPLVSIPPPQITASSPAPFSDHVGTFHGMNPTLPPPPPMMNRPPSTIPSVAMNHPPSSSPAMNFGSALPSSSPSVNFGSVPGRGVGYYKTLIHQHGGERLEQPFEQHGMQFGMYRQPGPPQNGGIDAMNGAAAMVSRDGKVRPMKPCAYFNSPKGCRNGASCTFLHDASAPTRKDHQKQKGSKRIKLDNTMGGRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.490497 | 0.157722 | 0.721953 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0663200 | RBH | 0.905976 | 0.090511 | 4.681506 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0663200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029900 | RBH | 0.469945 | 10.500107 | 4.066818 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0030670 | RBH | 0.233079 | 0.607804 | 2.982433 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0030240 | RBH | 0.455355 | 3.597569 | 8.007530 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0030070 | RBH | 0.074285 | 0.091963 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0030340 | RBH | 5.967841 | 7.034574 | 12.628959 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0533200 | RBH | 3.0231675 | 9.6595695 | 4.279924 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0028990 | RBH | 0.147610 | 0.595167 | 1.516639 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0537800 | RBH | 3.5674855 | 10.9292575 | 8.3355865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0029420 | RBH | 0.000000 | 0.075145 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0029260 | RBH | 0.351728 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0029390 | RBH | 5.827407 | 6.141358 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0029930 | RBH | 0.226895 | 0.398672 | 0.733284 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0029950 | RBH | 0.073016 | 3.179653 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G029380 | RBH | 0.145439 | 2.170115 | 1.343611 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0029160 | RBH | 0.881721 | 9.910901 | 6.037137 |
