Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g56450 | OGI:04098780 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:33648946-33653884 | ||||||||
| Gene Symbol | OsPP2C45, PP2C45, OsPP70 | ||||||||||
| DNA seq | GAAGATATGGCCGTCGGGGCCCAAATGGTTTCTGCTGGTGATCACATGGGCAGGAACGGCGTTGCTTGTTAGTAACAACTGGCAAAGTGTTGGATTTTGAGGATTGTGTTTGTGAAAGCGCCTGTGTAGATCACCGGTCAAAAGAAATCATCGATGGGGCATTGGCATGCCAAAAATGGATGTACTGAACATGTCCCTGAGAAGGGCCTCTTCTTAGGCTGCGAAAAGTTCAGGTCACAAGGCGCAGGGCGCCTTTCCTTCAATGATAACGGTGGCTGTATTTGCCCTCTAACATACTTGAAGGAACTCTAATCATCTAGAAATGATTATTAACATTCCAAAACTGTTAAACCCTTTGCCACCATCTCCAATCTGTCTTTGATGATTAATCAAACGCTCCGATCTGTCTTCGATGATATCTTGTGTGGTGCCGGCTTCCCTGCCCTCGACACGGGCACGACACGCCGCAATTCTCGTCGGATCTCGATTCTCACCGCCGGACGGCCGGTCAGGATGGAGAGCTCCAGGGCGTCCAGCATCACACATAAAAAACATGCAGTTTGAGATGTGGTTGCTCTGCCATAAACTCTGCAATCTGAATCTGGTTCGGCCATGTAGAACAGCATGGATTCTCTACTTCTCTTCCAACCCACCAAACTGCAGAGATACATAATGCTGTCACTGTCTCACTGATGTCTACAGTAATAACAAGAATGGCTACAAAGTCAAACTTAGCTCACCGGAAGTGGAGGATACAAACAAATAAATAGAGGAGTAATATCCACGTACATTGAACCTAGGGAAACGATCCAGTCTCCCGTAGCAATACAACACGACCATCAAATCCAGGGTCAAAAGCAACGAACTATGGTGATCGGTCACCAGCAAACTTATTGTTAACCTAAGGCATACTCACCCTTCAGCTTACTTCAGCCATCAGAATACACGTATCCTACTCCGAGTTTCTCTCCATTTAACCCCGTGAGATTTGAATTAAAACATGTATACATGGTGGTACACAACTACATTGGGTAACTTTTACCAGTTGTTTTTTAAGCATATCCACTACTCCCTTGCCCATGCAAGAAGCGCACGACAACACAAGTTATGTTGTCACTGCTCTCCCTCTTGTAGGCCTCTTGCAAGAGCTTCTTTGCAGCTTCTTCTGGGTCATGAATCGATCTGGTCATGTCGACAGCCTCCTGCATAAGAGCAAATGCAAAAGGGGGCTACATCAAGCACAAGGAATACGATTAAGATACATAAAAATCTTCTCTTTTCATTTTCTTGAATTTACCTCATTGGTTACTACATCCCACAGCCCATCACTTGCAAGAATGAGGAACTCGAGAGAGTGATCAATAACTTCCTCCTATGACCCACAAAAGCATTACTGAACAAGGTCATCATTTGTGAAAGGTGAATATAAAGGATGATTATTCTGAAGCCTAAAAAATTAACAACATATATTAGGAAATGGTTCTTCAGGTCGACTAAGAAGCTGGCAGTAGAACAGATCAGAAGTGCAGCTGTAAGACATTGATAACAAAAAGGCCAAAAATGAAACAATGCTGAAGACAAAATATGTCCCTGGTCGTTTATCATACCGCCCTATTAGTTTTGCTATGGAATATCTGGAAGTGCCTCAACAACAAAGTTTTCAGCAACTACGACAAGACGCTGTGCGGAAGACCTCCAGTGGTCCCATCGCAGCACAAATAGTTTTAGCTGGCAATGTATACTAGATTGGGGGAACAAATTTCTCGCACTTTGTAATATATAGGACCCTTTAGCTTCCACTCAGGCCCTCATCCCCCGTACCTCTTCACAATATGTATGTAACTTGGTACAAATTTTGATCAATAAAATGTTCAGGCTGGTAGAAAGCCATCCTTAATTTTTCCTTCGAAAATTTATGCCACAAATATCCCCTCAATAAGTATATCATGATTAAGATGGCAACTACTATCAATATCACTCTTGACATTCAATCCAATGACACAAGGGAATCATGATTCCAAACGTTCACCTACTGTCATGGTGATACCTACATATGCATTTTGAGAGGTAAGTAGACATAACAAACATTAAATTGGTCAGGATTGCATACCCGAATCTCAGGATCCACAACTACATACTGCTTTAAGAGTTTGTCACCAAAAGCGCGAGAAACAGCAAGCACACCACCAACACGCCATGTTCCTAAGGAACAAAATACCATCATTAGGAACACGATCATAGTCCATTCATATACAAAATAAGATAATGTAGTGCTTAGCACCTGCCCACATTACAAAACCTCCAGCATCTTCGATACGTTGTCGCTCATCTGTCTGATCAGGCTTGTGATCTTTTGAAACAGCTATAGCTGCAAAAAACCAGCAGAGCTTCTATGTGAAGAACTGATAAATTATCACAGATAACCTACAGATTATTTCTCATGGCACTCATTTCATCACCAACAAATCTTGATTCTCATGCCTGGTACAATGCAGATGCTCAGTGGTAAATACAACATTCTAACAAAACAAGCAAAAATATTCGTACCTTAAGAGAGGTCTCTATTAATAATAGAATATGCCAAACATAATCGGCTCTCTTGAATTTTTAAGCATACCATAAAAAAGAAAAAAAATAATGTGTCATGCTATATAAAGTCAGAAAGTATCAAGTAAATGCAACCAGGAAGCTGAAGAGATGGTACAGTGAACTGTCAATTACCATTTCCCCCCCTGCATATGATAGCCCTAGAGTCTCCAACGTTTGCAACAAAGAGACGGTCACCAACAAGGACAGCGGTTGATGCAGTTGATCCACACTGGTTTTGACTGCTGTCAGATTCTAAGAATTCACTGTCGGTACTTTTATAAGCATCATCTACAGCAAACAATATCACGTGGTAGTTCTGTCAATTCTATACACAAAACTCAACATCTAGTGAATTATGGAAAGAGAACAAACCAATACCTATTGCCACTTTGGTGTCACTGATGAACTTTGGATGCCTTAGAAGATGACTGAAGAGATTCTGTTTAACATACTCAGCTACTTTAGCACCACCATGACCTATAAAATGAACTGTATGTTTAGCATTTATTTTTCCTAAAATAAGCTCAAGAGCTTGGTATATCCACACTTCTAGTTCAATTTAAAGCATTGTGCCCTAGTATGAGTAATCTTTAAAACTTTCTCCATGGACTTCTCACCGTCATACTAGCTCTAACTGCGGAAATAAGAAATGTTACAAGGCAAATGAATTATTTTGAGCTTTTTTATACTATACAAGATTAGCAAAGGAAACATAAATGGTATGTTCTTTTGGTACAAAAGAGAAAGGTCTAAAACTTGGAAGAGTGTAATCTTAGAAATGTTCCTTTCTAAAATGATAAAGAATTATCAATGGGTAGAGATTATGCACGAATGTGACAAATTCATACATACCATCAAAAACTCCAAAAAGACCAATAATCTGCCCATCAACAGAGTCAATTCTTGTCTCGTAAAAGTCTTCCATGGAAGCCCTTTTACCAGGGGAGCTCGCATACCCATAGCTAAACTTACCATTCTGGCTGGCAAAAAAAGAATGAGAAATGTTGAGCAAATAGGAGAGCAACAGTCCTAATAACTGCATTTACACCATAAAATCAAGCTACCATGACAACGTTGATTAATTGGAAATAGAATATTATTCATAAAGTCACTACTCCTAAACTTCCAGACGCAGCCAGATTGCAGGCACTACAATTATTACAGTTCACTGGTTCAAAAAGCTAGAACCGGTTGTGTTGTGTGGTGAGCTACAACAACATGACCTATTGTATATGCTGTTACTGAAAGAACTAACATGGCATGATGCAAGATGTCATATTCATAGAAAATGCATTTGAGAAATGAGGGAGACGAACTTCCAGCTTGCAACTAACAGTACCAAATGCCCAAACCGTGCATTACTCATTAGTTTCCTTGATCTCAACCCATAGAATGTATAAGCACATCTAAGGTGGCCTCTTACCTTTTGCTATCATGCCCATTAGGACGTGCTACACTTAATAATTCTCCAACGTAACATCACATAAGTTCATTTTAGTCTGTATTCAGAATAACCGTCCAAATTTATTCGACGCAACTGCTTATGCTCAGATCAGGTATGTAGCATATGAATATCCTACTTAAACGGACAACATAACTCCAAACTGGATTTATCTTGTTTATAGTCCCACCAAAAAGTACTAATAAAACAAACAAAAATGGGATTGCATAGCTTATCCCATACTCCAGCCTTGCTTTTGAGCTTAAACAGCGTGTTCAAAGCAAAGGAAACCCACGCGAGCAGTTATACGAAATTCGTGCGATGCAGCAAGCAACGTATCACACGCCTGGACCGTACTGAATTGATTAGAACTAAACATTCAGCCATTATCTACTAGTTGCCAGATTATCCATTATCTAAAACAAAAACTGCTAGTCGCCAGAGCTAAGCTAGACAATCGAATTGACTAGATGGAGTACTCCAAAAAAAAAACCCAGAATTCGGGTAAAGCAAACACGAATCAGACCCAAAAAAAAAAGCGCAAAAAGAGGACAGGAGAGGCGTCCCGAGAATCAATCGCTCCCACCTGAGGCCGCCGCCGCTGACCGGCGATCCATCCGTGGGGATCACGGAGCTCAAGTACCCCATATCCCCCCCCTAGATCACACGAACGCGAACGCGACCAGCTCGTCCGAATCCCAGCAGCAGCAGCAGCAGCAGCAGGGGGAAGCGCGCCCCACGAATCGGGCCCCTCGCGCGAGTCAAATTTGGCGGATTTGGGTTTGGGAGGAGCGGAGGAGGGGAAGGGGGCGACGGGATTGGGCCATTTTCTAGTGGAAGCTTCTCTTGCTTCGTCGGGGGAGGGTGATGGGTGTTTTTGCACCCAGGTCCTTGGTGTTCCGCGTATTT
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| CDS seq | ATGGGGTACTTGAGCTCCGTGATCCCCACGGATGGATCGCCGGTCAGCGGCGGCGGCCTCAGCCAGAATGGTAAGTTTAGCTATGGGTATGCGAGCTCCCCTGGTAAAAGGGCTTCCATGGAAGACTTTTACGAGACAAGAATTGACTCTGTTGATGGGCAGATTATTGGTCTTTTTGGAGTTTTTGATGGTCATGGTGGTGCTAAAGTAGCTGAGTATGTTAAACAGAATCTCTTCAGTCATCTTCTAAGGCATCCAAAGTTCATCAGTGACACCAAAGTGGCAATAGATGATGCTTATAAAAGTACCGACAGTGAATTCTTAGAATCTGACAGCAGTCAAAACCAGTGTGGATCAACTGCATCAACCGCTGTCCTTGTTGGTGACCGTCTCTTTGTTGCAAACGTTGGAGACTCTAGGGCTATCATATGCAGGGGGGGAAATGCTATAGCTGTTTCAAAAGATCACAAGCCTGATCAGACAGATGAGCGACAACGTATCGAAGATGCTGGAGGTTTTGTAATGTGGGCAGGAACATGGCGTGTTGGTGGTGTGCTTGCTGTTTCTCGCGCTTTTGGTGACAAACTCTTAAAGCAGTATGTAGTTGTGGATCCTGAGATTCGGGAGGAAGTTATTGATCACTCTCTCGAGTTCCTCATTCTTGCAAGTGATGGGCTGTGGGATGTAGTAACCAATGAGGAGGCTGTCGACATGACCAGATCGATTCATGACCCAGAAGAAGCTGCAAAGAAGCTCTTGCAAGAGGCCTACAAGAGGGAGAGCAGTGACAACATAACTTGTGTTGTCGTGCGCTTCTTGCATGGGCAAGGGAGTAGTGGATATGCTTAA
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| Protein seq | MGYLSSVIPTDGSPVSGGGLSQNGKFSYGYASSPGKRASMEDFYETRIDSVDGQIIGLFGVFDGHGGAKVAEYVKQNLFSHLLRHPKFISDTKVAIDDAYKSTDSEFLESDSSQNQCGSTASTAVLVGDRLFVANVGDSRAIICRGGNAIAVSKDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVIDHSLEFLILASDGLWDVVTNEEAVDMTRSIHDPEEAAKKLLQEAYKRESSDNITCVVVRFLHGQGSSGYA |
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| Function | Probable protein phosphatase 2C 45 [UniProtKB/Swiss-Prot:Q7XR06] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g56450 | LOC_Os04g56450.1 | Chr04 | 33648946 | 33653884 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGGTACTTGAGCTCCGTGATCCCCACGGATGGATCGCCGGTCAGCGGCGGCGGCCTCAGCCAGAATGGTAAGTTTAGCTATGGGTATGCGAGCTCCCCTGGTAAAAGGGCTTCCATGGAAGACTTTTACGAGACAAGAATTGACTCTGTTGATGGGCAGATTATTGGTCTTTTTGGAGTTTTTGATGGTCATGGTGGTGCTAAAGTAGCTGAGTATGTTAAACAGAATCTCTTCAGTCATCTTCTAAGGCATCCAAAGTTCATCAGTGACACCAAAGTGGCAATAGATGATGCTTATAAAAGTACCGACAGTGAATTCTTAGAATCTGACAGCAGTCAAAACCAGTGTGGATCAACTGCATCAACCGCTGTCCTTGTTGGTGACCGTCTCTTTGTTGCAAACGTTGGAGACTCTAGGGCTATCATATGCAGGGGGGGAAATGCTATAGCTGTTTCAAAAGATCACAAGCCTGATCAGACAGATGAGCGACAACGTATCGAAGATGCTGGAGGTTTTGTAATGTGGGCAGGAACATGGCGTGTTGGTGGTGTGCTTGCTGTTTCTCGCGCTTTTGGTGACAAACTCTTAAAGCAGTATGTAGTTGTGGATCCTGAGATTCGGGAGGAAGTTATTGATCACTCTCTCGAGTTCCTCATTCTTGCAAGTGATGGGCTGTGGGATGTAGTAACCAATGAGGAGGCTGTCGACATGACCAGATCGATTCATGACCCAGAAGAAGCTGCAAAGAAGCTCTTGCAAGAGGCCTACAAGAGGGAGAGCAGTGACAACATAACTTGTGTTGTCGTGCGCTTCTTGCATGGGCAAGGGAGTAGTGGATATGCTTAA
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| Protein seq | MGYLSSVIPTDGSPVSGGGLSQNGKFSYGYASSPGKRASMEDFYETRIDSVDGQIIGLFGVFDGHGGAKVAEYVKQNLFSHLLRHPKFISDTKVAIDDAYKSTDSEFLESDSSQNQCGSTASTAVLVGDRLFVANVGDSRAIICRGGNAIAVSKDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVIDHSLEFLILASDGLWDVVTNEEAVDMTRSIHDPEEAAKKLLQEAYKRESSDNITCVVVRFLHGQGSSGYA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g56450 | LOC_Os04g56450.2 | Chr04 | 33648946 | 33653854 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGGTACTTGAGCTCCGTGATCCCCACGGATGGATCGCCGGTCAGCGGCGGCGGCCTCAGTCATTTTATAGGTCATGGTGGTGCTAAAGTAGCTGAGTATGTTAAACAGAATCTCTTCAGTCATCTTCTAAGGCATCCAAAGTTCATCAGTGACACCAAAGTGGCAATAGATGATGCTTATAAAAGTACCGACAGTGAATTCTTAGAATCTGACAGCAGTCAAAACCAGTGTGGATCAACTGCATCAACCGCTGTCCTTGTTGGTGACCGTCTCTTTGTTGCAAACGTTGGAGACTCTAGGGCTATCATATGCAGGGGGGGAAATGCTATAGCTGTTTCAAAAGATCACAAGCCTGATCAGACAGATGAGCGACAACGTATCGAAGATGCTGGAGGTTTTGTAATGTGGGCAGGAACATGGCGTGTTGGTGGTGTGCTTGCTGTTTCTCGCGCTTTTGGTGACAAACTCTTAAAGCAGTATGTAGTTGTGGATCCTGAGATTCGGGAGGAAGTTATTGATCACTCTCTCGAGTTCCTCATTCTTGCAAGTGATGGGCTGTGGGATGTAGTAACCAATGAGGAGGCTGTCGACATGACCAGATCGATTCATGACCCAGAAGAAGCTGCAAAGAAGCTCTTGCAAGAGGCCTACAAGAGGGAGAGCAGTGACAACATAACTTGTGTTGTCGTGCGCTTCTTGCATGGGCAAGGGAGTAGTGGATATGCTTAA
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| Protein seq | MGYLSSVIPTDGSPVSGGGLSHFIGHGGAKVAEYVKQNLFSHLLRHPKFISDTKVAIDDAYKSTDSEFLESDSSQNQCGSTASTAVLVGDRLFVANVGDSRAIICRGGNAIAVSKDHKPDQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDKLLKQYVVVDPEIREEVIDHSLEFLILASDGLWDVVTNEEAVDMTRSIHDPEEAAKKLLQEAYKRESSDNITCVVVRFLHGQGSSGYA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.688571 | 1.033745 | 1.436464 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0659500 | RBH | 1.494127 | 1.801851 | 10.331068 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g05630 | SBH | 2.812652 | 1.757675 | 3.406829 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0659500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029610 | RBH | 0.785637 | 13.877950 | 8.139768 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0030380 | RBH | 0.537029 | 3.138922 | 4.952703 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0029950 | RBH | 2.130588 | 15.217405 | 12.135333 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0029770 | RBH | 0.181155 | 0.386970 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0030060 | RBH | 7.850457 | 15.162980 | 28.012825 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0530000 | RBH | 7.2499125 | 23.9803995 | 60.9475325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0028710 | RBH | 0.221119 | 1.413025 | 1.394986 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0534400 | RBH | 9.5868305 | 17.9254015 | 12.5143845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0029130 | RBH | 0.274818 | 0.371398 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0028980 | RBH | 0.692419 | 9.865911 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0029100 | RBH | 5.562918 | 47.831970 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0029650 | RBH | 1.449734 | 1.636317 | 1.493367 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0029660 | RBH | 0.690224 | 9.399269 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G029090 | RBH | 0.642206 | 6.549383 | 4.254376 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0028860 | RBH | 2.148616 | 23.966051 | 16.016773 |
