Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g56120 | OGI:04098240 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:33421535-33423302 | ||||||||
| Gene Symbol | RLCK169, OsRLCK169 | ||||||||||
| DNA seq | AGTACAATATAATTACACTATGATCACACTGTATTTACATATGTTAAATTTCAGAGAGAAAAATTGTCAACAAATATATAGCAAAATCGATCCTCCTCTACCTCTGATCCTCCCAATGACAGTCAGGGCCCACATGTCTAACCCATCTTCCTCGCTACAGAGTACAGACTGCAGAGTCGAATTGAGTCACACCGAAACGTTTAAAACCAAAATTAGCGGAACAAATACGGCACTATAACAGTCTAACACACTAAAATGTTGTAGACATGCACTTATACACATCAGTAGGTGTACGTCTTTGAACACAACAGCCTTGCTGACAACTCACACCCGTGCTGTGCAAACGTGGAAGAATCAGAAAACGGGAATTCGTTTCCGACACGTCTACCTGCCGGTACGAGCCGACGAACCATCCGATTCCGTGGTGGCGGTAGTGGTGGTCGGCGACGAGCCGGCGGCGCTGTACGGCGCGAGGTGGGCGAACGGGTTGCGCGGCGCGGCGATGTGGTCCTCCCCTTCCAGCATCCGCACGACGTTGCCCATGGACGGCCTGTCCTCCGGCCTGTACTGCACGCACCACAGTGCCACCATGCACACCCTCTCCGCCTTCTCCCTCTCCCTCCCGCCGCCCGCCGCCGCCGCCGTCGCGCGCGCCAGCACGGCCTCCGTCTCGCCGGCCTCGAACCGGTGCCACACCCACCGCGGGTACCACTCCTGGCTGCCGTGCCCGTGCGCGCCGGCCCCGGCGCCGAGCTCCAGGTTCCGCCGCCTCCCGAGCATCTCGAACAGCAGCATCCCGTAGCTGTACACGTCGCACTTGTGCGTCACGGGGAGCGGCATCCACAGCTCCGGCGCCGCGTACCCCGGGGTGCCGCGCGCGCCGGTGATGGTCAGGTGGGTGTCCTCCCTGTCGCACAGCTTGGCGAGCCCGAAGTCGGACACCTTGGGCGCCATCCCGGCGCCGAGGAGCACGTTCTCCGGCTTGATGTCGTAGTGGATGATCCGCTGCGCGCACTCCTCGTGCAGGTACCGCACCGCCTTCGCCGTCCCGACGGCGATCTCGTGGAGCTTCTCGAACCCGATCCTCTCCGCCGCCGGCGACGGCGACGAGTCGAACAGGTAGCGGTCCAGCGAGCCCTTCTCCATGTACTCGTACACGAGCGCCTTCACGTCGGCGTCGAAGCAGAAGCCGTAGAGGCGGACGAGGTTGATGTGGTACGTCCTCCCGATGGTGCCGACCTCCGCCATGAACTGCTCCTCGGCGCGCTTCCCGAGCGTGCTGTTCAGCACCTTGACGGCCACCGGCGCGCCGCTCGGGAACACGCCGCGGTACACCACGCCGAACCCGCCGGAGCCGACCTTGTGGGCGTAGCTCTTGGTGAAGGCGCGCAGCTGCCGCGCGCTGAACCGCACGGGCCGCTCGTTCTGGAGGCCCTCGATGAAGTGGCTCATGCTGCCCATCTCGACGACGTCCGCGTCCGCGCCGCCGATTCCGCCCCGGCTGCTGCTGCTGCCGCCGCCGTTGGCGATGGGCGTGTGATGGTCACGACTGCTACTATACCACATTTTGATGGCGATCTTGGCGCACTTGTAAATCGCAACTATGGTCACGACTGCTACTATACCAGTCGTGATCACCCCAACTGCGATATGTTAATCAAAATTTTGTTACTACAAGCGACATAGATGTAGATAATAGGCGATGCATATGAGTACATCGATCATACTTACTGAGTGCTAAAGCAAGACTTCCATTGGCGATGGCCAT
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| CDS seq | ATGGCCATCGCCAATGGAAGTCTTGCTTTAGCACTCATTGGGGTGATCACGACTGGTATAGTAGCAGTCGTGACCATAGTTGCGATTTACAAGTGCGCCAAGATCGCCATCAAAATGTGGTATAGTAGCAGTCGTGACCATCACACGCCCATCGCCAACGGCGGCGGCAGCAGCAGCAGCCGGGGCGGAATCGGCGGCGCGGACGCGGACGTCGTCGAGATGGGCAGCATGAGCCACTTCATCGAGGGCCTCCAGAACGAGCGGCCCGTGCGGTTCAGCGCGCGGCAGCTGCGCGCCTTCACCAAGAGCTACGCCCACAAGGTCGGCTCCGGCGGGTTCGGCGTGGTGTACCGCGGCGTGTTCCCGAGCGGCGCGCCGGTGGCCGTCAAGGTGCTGAACAGCACGCTCGGGAAGCGCGCCGAGGAGCAGTTCATGGCGGAGGTCGGCACCATCGGGAGGACGTACCACATCAACCTCGTCCGCCTCTACGGCTTCTGCTTCGACGCCGACGTGAAGGCGCTCGTGTACGAGTACATGGAGAAGGGCTCGCTGGACCGCTACCTGTTCGACTCGTCGCCGTCGCCGGCGGCGGAGAGGATCGGGTTCGAGAAGCTCCACGAGATCGCCGTCGGGACGGCGAAGGCGGTGCGGTACCTGCACGAGGAGTGCGCGCAGCGGATCATCCACTACGACATCAAGCCGGAGAACGTGCTCCTCGGCGCCGGGATGGCGCCCAAGGTGTCCGACTTCGGGCTCGCCAAGCTGTGCGACAGGGAGGACACCCACCTGACCATCACCGGCGCGCGCGGCACCCCGGGGTACGCGGCGCCGGAGCTGTGGATGCCGCTCCCCGTGACGCACAAGTGCGACGTGTACAGCTACGGGATGCTGCTGTTCGAGATGCTCGGGAGGCGGCGGAACCTGGAGCTCGGCGCCGGGGCCGGCGCGCACGGGCACGGCAGCCAGGAGTGGTACCCGCGGTGGGTGTGGCACCGGTTCGAGGCCGGCGAGACGGAGGCCGTGCTGGCGCGCGCGACGGCGGCGGCGGCGGGCGGCGGGAGGGAGAGGGAGAAGGCGGAGAGGGTGTGCATGGTGGCACTGTGGTGCGTGCAGTACAGGCCGGAGGACAGGCCGTCCATGGGCAACGTCGTGCGGATGCTGGAAGGGGAGGACCACATCGCCGCGCCGCGCAACCCGTTCGCCCACCTCGCGCCGTACAGCGCCGCCGGCTCGTCGCCGACCACCACTACCGCCACCACGGAATCGGATGGTTCGTCGGCTCGTACCGGCAGGTAG
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| Protein seq | MAIANGSLALALIGVITTGIVAVVTIVAIYKCAKIAIKMWYSSSRDHHTPIANGGGSSSSRGGIGGADADVVEMGSMSHFIEGLQNERPVRFSARQLRAFTKSYAHKVGSGGFGVVYRGVFPSGAPVAVKVLNSTLGKRAEEQFMAEVGTIGRTYHINLVRLYGFCFDADVKALVYEYMEKGSLDRYLFDSSPSPAAERIGFEKLHEIAVGTAKAVRYLHEECAQRIIHYDIKPENVLLGAGMAPKVSDFGLAKLCDREDTHLTITGARGTPGYAAPELWMPLPVTHKCDVYSYGMLLFEMLGRRRNLELGAGAGAHGHGSQEWYPRWVWHRFEAGETEAVLARATAAAAGGGREREKAERVCMVALWCVQYRPEDRPSMGNVVRMLEGEDHIAAPRNPFAHLAPYSAAGSSPTTTTATTESDGSSARTGR |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 [UniProtKB/Swiss-Prot:Q9XID3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g56120 | LOC_Os04g56120.1 | Chr04 | 33421535 | 33423302 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCCATCGCCAATGGAAGTCTTGCTTTAGCACTCATTGGGGTGATCACGACTGGTATAGTAGCAGTCGTGACCATAGTTGCGATTTACAAGTGCGCCAAGATCGCCATCAAAATGTGGTATAGTAGCAGTCGTGACCATCACACGCCCATCGCCAACGGCGGCGGCAGCAGCAGCAGCCGGGGCGGAATCGGCGGCGCGGACGCGGACGTCGTCGAGATGGGCAGCATGAGCCACTTCATCGAGGGCCTCCAGAACGAGCGGCCCGTGCGGTTCAGCGCGCGGCAGCTGCGCGCCTTCACCAAGAGCTACGCCCACAAGGTCGGCTCCGGCGGGTTCGGCGTGGTGTACCGCGGCGTGTTCCCGAGCGGCGCGCCGGTGGCCGTCAAGGTGCTGAACAGCACGCTCGGGAAGCGCGCCGAGGAGCAGTTCATGGCGGAGGTCGGCACCATCGGGAGGACGTACCACATCAACCTCGTCCGCCTCTACGGCTTCTGCTTCGACGCCGACGTGAAGGCGCTCGTGTACGAGTACATGGAGAAGGGCTCGCTGGACCGCTACCTGTTCGACTCGTCGCCGTCGCCGGCGGCGGAGAGGATCGGGTTCGAGAAGCTCCACGAGATCGCCGTCGGGACGGCGAAGGCGGTGCGGTACCTGCACGAGGAGTGCGCGCAGCGGATCATCCACTACGACATCAAGCCGGAGAACGTGCTCCTCGGCGCCGGGATGGCGCCCAAGGTGTCCGACTTCGGGCTCGCCAAGCTGTGCGACAGGGAGGACACCCACCTGACCATCACCGGCGCGCGCGGCACCCCGGGGTACGCGGCGCCGGAGCTGTGGATGCCGCTCCCCGTGACGCACAAGTGCGACGTGTACAGCTACGGGATGCTGCTGTTCGAGATGCTCGGGAGGCGGCGGAACCTGGAGCTCGGCGCCGGGGCCGGCGCGCACGGGCACGGCAGCCAGGAGTGGTACCCGCGGTGGGTGTGGCACCGGTTCGAGGCCGGCGAGACGGAGGCCGTGCTGGCGCGCGCGACGGCGGCGGCGGCGGGCGGCGGGAGGGAGAGGGAGAAGGCGGAGAGGGTGTGCATGGTGGCACTGTGGTGCGTGCAGTACAGGCCGGAGGACAGGCCGTCCATGGGCAACGTCGTGCGGATGCTGGAAGGGGAGGACCACATCGCCGCGCCGCGCAACCCGTTCGCCCACCTCGCGCCGTACAGCGCCGCCGGCTCGTCGCCGACCACCACTACCGCCACCACGGAATCGGATGGTTCGTCGGCTCGTACCGGCAGGTAG
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| Protein seq | MAIANGSLALALIGVITTGIVAVVTIVAIYKCAKIAIKMWYSSSRDHHTPIANGGGSSSSRGGIGGADADVVEMGSMSHFIEGLQNERPVRFSARQLRAFTKSYAHKVGSGGFGVVYRGVFPSGAPVAVKVLNSTLGKRAEEQFMAEVGTIGRTYHINLVRLYGFCFDADVKALVYEYMEKGSLDRYLFDSSPSPAAERIGFEKLHEIAVGTAKAVRYLHEECAQRIIHYDIKPENVLLGAGMAPKVSDFGLAKLCDREDTHLTITGARGTPGYAAPELWMPLPVTHKCDVYSYGMLLFEMLGRRRNLELGAGAGAHGHGSQEWYPRWVWHRFEAGETEAVLARATAAAAGGGREREKAERVCMVALWCVQYRPEDRPSMGNVVRMLEGEDHIAAPRNPFAHLAPYSAAGSSPTTTTATTESDGSSARTGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0655400 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g56130 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0655400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0029360 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0030120 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0029690 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0029510 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0029780 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0526700 | RBH | 0.0627975 | 2.1397225 | 0.007548 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0028410 | RBH | 0.0 | 0.135735 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0531200 | RBH | 0.010221 | 1.1520325 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0028860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0028700 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0028810 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0029390 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0029370 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G028830 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0028610 | RBH | 0.0 | 0.000000 | 0.0 |
