Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g53860 | OGI:04094520 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:32090821-32093093 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAACCGCCGTCTTCATTCCAGTAAGCTATTTCTCTCAGGAGGACGTAGTGGAGCCTGGAGGGGACGAAGTAGCCGGCGGCACGGCGATGTCAGCGGTTGGGATGAAGACGGCGTGCGTGACCGGCGGGAACGGGTATATCGCTTCGGCGCTCATCAAGATGCTGCTTCAGAAGGGATATGCTGTCAACACGACAGTCAGAAACCCTGGTGAGATTCTTCCCCCTTTTTTGTTGTTCATGATTTCAGTTACAGGCTGTGATTAGTTTCATGCCAAAATTAGAAGTTCAATGAAATTAGAACGATGTAATGAAAAAGTTAGAAATTTATGTATGTAGGAAAGTTCGATGTGACGAAAAAGTTGAAAGTTTAAAGAAGAAAAATGAAATCTAAACAGGGCCACAGTCTTTCTCCCATTCAGATTCAAAAATCTTTTGGTCAGAGGTAGTTTATTTGCTGAACTGTCGTCATGAACAATAGAAAAAGTTCTTCTATCTGCACCATATAGAAAATCTTTATATGTTCCAACTGATATAGTGACATATGCTGGAAACGATGGATGCAAATCTTTATGATCTCAATTCTCAAGACAACGCTACGAATTTTCAGAGTTCAGTTTCACATCTGACGATCCTACTCTTGTGTATTCAGATGACATGAGGAAGAATTCCCATCTCAAGGGGTTGGAGGCACTAGGCACCTTGAAGGTCTTCCGTGCCGACCTTGACGAAGATGGCAGCTTCGATGAAGCCGTCAACGGCTGCGATTACGCCTTCCTCGTCGCCGCTCCGGTGAATCTCCAGTCAGAGAATCCTGAGGTGAACAGCTAGCTTAGCTAATTAATCCGGTTTTCTCTAATCGACGTCACAGTTGACAGTTGTCTTGTGTCATCTGATGATAAGCATGCTCTTTAGTCTCTAGTACTGAAATTAATTTGCTCTTAACTTCTACGATGACAAATTAAGCTGGGTTTCCTGCCAACGTTTGATGGCAGAAAGAGATGATTGAAGCCGGCGTCCAAGGAACCCTGAACGTGATGAGATCGTGCCTGAGAGCCGGCACGGTGAAGCGCGTGATTCTGACATCGTCGGCGGCCGCCGTCGCCCTCCGTCCGCTGCAAGGCGGCGTCGGCCATGTCCTGGACGAGTCGTCCTGGTCCGACGTCGACTACCTGACGAGAGAGAAGCCACCATCTTGGGTCACATTCTACTCCTTTCTTTTTTGGTCCTCCATCAAATCATTCATATACATTTTTTACCGGGCTGATGAAAATGACGGCTGGCTGATGCTAGCACACCCCATTGTTTTTGCGTTTGCGTTTTGCAGGCGTATGGTGTCTCGAAGGTGCTTTTGGAGAAGGCGGCGTGCAAATTCGCGGAGGAGAACGACATCAGCCTCATCACCGTGCTCCCGGTGTTCACCTTGGGCGCGGCGCCGACGCCGTTGACCACAACAAGCATCCCAACTACGCTCTCCTTGCTGTCTGGTGAGAGCCTGAGAAACATACGTCAAATTTAAGAAGCTACTCTTTTATTTGTTCAGATTCAAGATATATCACATTTTATATTTGATTTGTTTATTTTAGAATTAAGAGAGTATGTACTTCCATTATGTGTTACGATTGACGTTGTTTCTTTTTCAGGTGATGAGGCGCAGCTAAAAACCCTGAAAGGCCTGGCGGCCACCGGCTCCATTCCGGTGGTTCACGTGGACGACGTCTGCCGCGCCGAGATATTCCTCGCGGAGAAGGAGTCGGCGTCGGGGAGGTACATCTGCAGCAGCCTCAGCACCACCGTGATGGCGCTCGCACGTTTCGCGGCAGCAAAATACCCTCAGTACAACGTCCAAACCGACTGGTACATATACACGAACTGGCACTTTCAGTTTCAACTTTCAAGTGACTGATCGATCGACACATGCATTTCTTGAGAGAACCTGATGAGCCAGCGATAATCTTTGTTTGCTCGTAGTTTCGAAGGGTTCCCTGAGAAGCCGAGAGTGTGCTATTCGTCGGAGAAGCTGACGAGGGAAGGGTTCGAGTTCAAGTGGACGGATCTGGACGAGATATTCGGCGACCTCGTCGAGTACGGCAAGGCCCTGGGGATTCTACCGCACTGAATTGATGGTTGCTCCGTCAATTTGGAGTTTTGGACATAAAAATTCTCTTGTGAAATTGTTAGTCCTCTTGTCTTGTGAAATAAGTCATTGTTGTGTGTTACGGTATGGTAATCTCTTTATGATACGGACCCTTTCACTACCACAGAACATGTGAAAAA
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| CDS seq | ATGTCAGCGGTTGGGATGAAGACGGCGTGCGTGACCGGCGGGAACGGGTATATCGCTTCGGCGCTCATCAAGATGCTGCTTCAGAAGGGATATGCTGTCAACACGACAGTCAGAAACCCTGATGACATGAGGAAGAATTCCCATCTCAAGGGGTTGGAGGCACTAGGCACCTTGAAGGTCTTCCGTGCCGACCTTGACGAAGATGGCAGCTTCGATGAAGCCGTCAACGGCTGCGATTACGCCTTCCTCGTCGCCGCTCCGGTGAATCTCCAGTCAGAGAATCCTGAGAAAGAGATGATTGAAGCCGGCGTCCAAGGAACCCTGAACGTGATGAGATCGTGCCTGAGAGCCGGCACGGTGAAGCGCGTGATTCTGACATCGTCGGCGGCCGCCGTCGCCCTCCGTCCGCTGCAAGGCGGCGTCGGCCATGTCCTGGACGAGTCGTCCTGGTCCGACGTCGACTACCTGACGAGAGAGAAGCCACCATCTTGGGTCACATTCTACTCCTTTCTTTTTTGGTCCTCCATCAAATCATTCATATACATTTTTTACCGGGCTGATGAAAATGACGGCTGGCTGATGCTAGCACACCCCATTGTTTTTGCGTTTGCGTTTTGCAGGCGTATGGTGTCTCGAAGGTGCTTTTGGAGAAGGCGGCGTGCAAATTCGCGGAGGAGAACGACATCAGCCTCATCACCGTGCTCCCGGTGTTCACCTTGGGCGCGGCGCCGACGCCGTTGA
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| Protein seq | MSAVGMKTACVTGGNGYIASALIKMLLQKGYAVNTTVRNPDDMRKNSHLKGLEALGTLKVFRADLDEDGSFDEAVNGCDYAFLVAAPVNLQSENPEKEMIEAGVQGTLNVMRSCLRAGTVKRVILTSSAAAVALRPLQGGVGHVLDESSWSDVDYLTREKPPSWVTFYSFLFWSSIKSFIYIFYRADENDGWLMLAHPIVFAFAFCRRMVSRRCFWRRRRANSRRRTTSASSPCSRCSPWARRRRR |
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| Function | Anthocyanidin reductase ((2S)-flavan-3-ol-forming) [UniProtKB/Swiss-Prot:D7U6G6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g53860 | LOC_Os04g53860.1 | Chr04 | 32090821 | 32093093 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCAGCGGTTGGGATGAAGACGGCGTGCGTGACCGGCGGGAACGGGTATATCGCTTCGGCGCTCATCAAGATGCTGCTTCAGAAGGGATATGCTGTCAACACGACAGTCAGAAACCCTGATGACATGAGGAAGAATTCCCATCTCAAGGGGTTGGAGGCACTAGGCACCTTGAAGGTCTTCCGTGCCGACCTTGACGAAGATGGCAGCTTCGATGAAGCCGTCAACGGCTGCGATTACGCCTTCCTCGTCGCCGCTCCGGTGAATCTCCAGTCAGAGAATCCTGAGAAAGAGATGATTGAAGCCGGCGTCCAAGGAACCCTGAACGTGATGAGATCGTGCCTGAGAGCCGGCACGGTGAAGCGCGTGATTCTGACATCGTCGGCGGCCGCCGTCGCCCTCCGTCCGCTGCAAGGCGGCGTCGGCCATGTCCTGGACGAGTCGTCCTGGTCCGACGTCGACTACCTGACGAGAGAGAAGCCACCATCTTGGGTCACATTCTACTCCTTTCTTTTTTGGTCCTCCATCAAATCATTCATATACATTTTTTACCGGGCTGATGAAAATGACGGCTGGCTGATGCTAGCACACCCCATTGTTTTTGCGTTTGCGTTTTGCAGGCGTATGGTGTCTCGAAGGTGCTTTTGGAGAAGGCGGCGTGCAAATTCGCGGAGGAGAACGACATCAGCCTCATCACCGTGCTCCCGGTGTTCACCTTGGGCGCGGCGCCGACGCCGTTGA
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| Protein seq | MSAVGMKTACVTGGNGYIASALIKMLLQKGYAVNTTVRNPDDMRKNSHLKGLEALGTLKVFRADLDEDGSFDEAVNGCDYAFLVAAPVNLQSENPEKEMIEAGVQGTLNVMRSCLRAGTVKRVILTSSAAAVALRPLQGGVGHVLDESSWSDVDYLTREKPPSWVTFYSFLFWSSIKSFIYIFYRADENDGWLMLAHPIVFAFAFCRRMVSRRCFWRRRRANSRRRTTSASSPCSRCSPWARRRRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.118727 | 0.000000 | 1.250735 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0630900 | RBH | 0.189429 | 0.196682 | 4.407629 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0630900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0027730 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0028510 | SBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0028160 | SBH | 0.0 | 0.0 | 2.185503 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0027980 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0028220 | SBH | 0.000000 | 2.899320 | 5.767565 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0506200 | SBH | 11.1147975 | 40.342945 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0026920 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0509500 | SBH | 4.8475155 | 0.251505 | 19.1165945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0027310 | SBH | 0.0 | 0.064770 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0027140 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0027190 | SBH | 0.0 | 10.602835 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027770 | SBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0027820 | SBH | 0.178740 | 1.971581 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G027080 | SBH | 0.0 | 0.0 | 0.571099 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0027080 | SBH | 0.0 | 0.0 | 0.0 |
