Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os04g49748 | OGI:04088100 | 7/16 | Nipponbare | IRGSP 1.0 | MSU | Chr04:29660959-29662569 | ||||||||
| Gene Symbol | PUP6, OsPUP6 | ||||||||||
| DNA seq | GACGACTCCAAGTTGGCAAGTTTCAGCCTTCCGCTGCTGCTGGACGAGTGGATGACGAGCACTAGGCCCATCTTGTTGTTTATCCTTTTTCTGAACCTCACAATGAGCGATGCTACTGAAATTCAGCTGCAGATTACAGGTCTCTCTCGGTCATGAACTGCCAAATCGATCACAGTTTCGAATTGAGATGTGATGTGAGATCGATCGAAACTAGTCCAGTTTTTATACTGATGAGACGGATGATTCGTATGTGCAGGTGTCCGAGGCCAAGAAGACGTGGTAGCAGAGTCTGACAAGAGCACGTCTCGAGCAGATGGAACTGCGGCGGCGGCGGCGGCGGCGGCGCCGCTGCCGCCTGTGTCCAGCCAGCGGCTGCGGTGGTGGGCGGTGGTCCTTGCCAACATCGTGTTCGTCCTCGGCGGGCAGAGCGTGGCCACGCTCCTCGGCCGGATTTACTACGACCAGGGCGGCGGCAGCTTGTGGCTGGCGACGGTGGTGCAGTCCTGCGGCGCGCCGCTCGCCGTCCCACTGCTGCTCTACTTCCGGCGGCCAGAGGCCTCCCCGGTGGCACGTCCGCCGCTGCTCAAGATCGCTGCCATCTACGCCGGCCTTGGCGTCCTCCTCGCCGGCGACAACCTGATGTACTCCTACGCGCTCCTCTACCTGCCGCTGTCGACGTACTCCCTCGTCTGCGCCACCCAGCTCTGCTTCAACGCCGTCTTCTCCTACTTCCTCAACAAGGAGAGGTTCACCGCGCTCGTGCTCAACTCCGTCGTGCTGCTCACCTTCTCCGCCGCGCTCGTCGGCGTGAGCCACTCCTCGGAGGAGACCAACAGCAGCGTCCCGGAGGGCAAGTTCGCGCTGGGGTTCGTCCTGGCGCTGTCGGCGTCGGCGGCGTTCGCCCTGATCCTGTCCCTGATGCAGCTCACGTTCGACACGGTGCTCAGGAGCAACGCGGCACACGCCGTGCTGGAGCTGCAGCTCTGGAGCAACGCCGCCGCGTCGTGCGTGTCGGTGGCCGGGCTGTTCATCTCCGGCGAGTGGAGCTCCCTGACGGCGGAGATGGACGGGTACAAGAAGGGCGAGGTGGCCTACGGGATGACGCTGGCGTGGACGGCCATCTCGTGGCAGCTCGCCACGATGGGCATGGTGGGGCTCGTCGCGACGGTGTCGTCGCTGTTCACGAACGTGATCAGCACGGTGGGGATGCCGCTGTCGCCGATCATGGCGGTGATCTTCCTCGGCGACCGGATGGACGGTGCCAAAGTGATAGCCATGCTCATTGGCATCTGGGGATTCTTGTCCTACGTTTACCAGCACTACCTCGATGACGCCAAGAGCAAGAACACAGCTGGGTCAGCTGACGTCACACAAACTTCAGAAGCAAAACTCTGAAGCCTGATACGCCTGATAGTGATACCCAGAGTGAATTTTACTGTACTTGATCTCTTTTTTTTCACGGAATCAATTGGAAATTTGGAATACTGGTCTTATCTTCCCTGGAATAACGGGGTCAATCAGAGTAACTGCAGAATAACAGGAACTCGATAATCGCTTTTTGCTCAAAAACATTACAGCATCGAGGAAGATCCCCGTCTTCATCAGTTTCTG
More
|
||||||||||
| CDS seq | ATGACGAGCACTAGGCCCATCTTGTTGTTTATCCTTTTTCTGAACCTCACAATGAGCGATGCTACTGAAATTCAGCTGCAGATTACAGGTGTCCGAGGCCAAGAAGACGTGGTAGCAGAGTCTGACAAGAGCACGTCTCGAGCAGATGGAACTGCGGCGGCGGCGGCGGCGGCGGCGCCGCTGCCGCCTGTGTCCAGCCAGCGGCTGCGGTGGTGGGCGGTGGTCCTTGCCAACATCGTGTTCGTCCTCGGCGGGCAGAGCGTGGCCACGCTCCTCGGCCGGATTTACTACGACCAGGGCGGCGGCAGCTTGTGGCTGGCGACGGTGGTGCAGTCCTGCGGCGCGCCGCTCGCCGTCCCACTGCTGCTCTACTTCCGGCGGCCAGAGGCCTCCCCGGTGGCACGTCCGCCGCTGCTCAAGATCGCTGCCATCTACGCCGGCCTTGGCGTCCTCCTCGCCGGCGACAACCTGATGTACTCCTACGCGCTCCTCTACCTGCCGCTGTCGACGTACTCCCTCGTCTGCGCCACCCAGCTCTGCTTCAACGCCGTCTTCTCCTACTTCCTCAACAAGGAGAGGTTCACCGCGCTCGTGCTCAACTCCGTCGTGCTGCTCACCTTCTCCGCCGCGCTCGTCGGCGTGAGCCACTCCTCGGAGGAGACCAACAGCAGCGTCCCGGAGGGCAAGTTCGCGCTGGGGTTCGTCCTGGCGCTGTCGGCGTCGGCGGCGTTCGCCCTGATCCTGTCCCTGATGCAGCTCACGTTCGACACGGTGCTCAGGAGCAACGCGGCACACGCCGTGCTGGAGCTGCAGCTCTGGAGCAACGCCGCCGCGTCGTGCGTGTCGGTGGCCGGGCTGTTCATCTCCGGCGAGTGGAGCTCCCTGACGGCGGAGATGGACGGGTACAAGAAGGGCGAGGTGGCCTACGGGATGACGCTGGCGTGGACGGCCATCTCGTGGCAGCTCGCCACGATGGGCATGGTGGGGCTCGTCGCGACGGTGTCGTCGCTGTTCACGAACGTGATCAGCACGGTGGGGATGCCGCTGTCGCCGATCATGGCGGTGATCTTCCTCGGCGACCGGATGGACGGTGCCAAAGTGATAGCCATGCTCATTGGCATCTGGGGATTCTTGTCCTACGTTTACCAGCACTACCTCGATGACGCCAAGAGCAAGAACACAGCTGGGTCAGCTGACGTCACACAAACTTCAGAAGCAAAACTCTGA
More
|
||||||||||
| Protein seq | MTSTRPILLFILFLNLTMSDATEIQLQITGVRGQEDVVAESDKSTSRADGTAAAAAAAAPLPPVSSQRLRWWAVVLANIVFVLGGQSVATLLGRIYYDQGGGSLWLATVVQSCGAPLAVPLLLYFRRPEASPVARPPLLKIAAIYAGLGVLLAGDNLMYSYALLYLPLSTYSLVCATQLCFNAVFSYFLNKERFTALVLNSVVLLTFSAALVGVSHSSEETNSSVPEGKFALGFVLALSASAAFALILSLMQLTFDTVLRSNAAHAVLELQLWSNAAASCVSVAGLFISGEWSSLTAEMDGYKKGEVAYGMTLAWTAISWQLATMGMVGLVATVSSLFTNVISTVGMPLSPIMAVIFLGDRMDGAKVIAMLIGIWGFLSYVYQHYLDDAKSKNTAGSADVTQTSEAKL |
||||||||||
| Function | Probable purine permease 11 [UniProtKB/Swiss-Prot:Q9LPF6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os04g49748 | LOC_Os04g49748.1 | Chr04 | 29660959 | 29662569 | + | MSU_osa1r7 | ||
| CDS seq | ATGACGAGCACTAGGCCCATCTTGTTGTTTATCCTTTTTCTGAACCTCACAATGAGCGATGCTACTGAAATTCAGCTGCAGATTACAGGTGTCCGAGGCCAAGAAGACGTGGTAGCAGAGTCTGACAAGAGCACGTCTCGAGCAGATGGAACTGCGGCGGCGGCGGCGGCGGCGGCGCCGCTGCCGCCTGTGTCCAGCCAGCGGCTGCGGTGGTGGGCGGTGGTCCTTGCCAACATCGTGTTCGTCCTCGGCGGGCAGAGCGTGGCCACGCTCCTCGGCCGGATTTACTACGACCAGGGCGGCGGCAGCTTGTGGCTGGCGACGGTGGTGCAGTCCTGCGGCGCGCCGCTCGCCGTCCCACTGCTGCTCTACTTCCGGCGGCCAGAGGCCTCCCCGGTGGCACGTCCGCCGCTGCTCAAGATCGCTGCCATCTACGCCGGCCTTGGCGTCCTCCTCGCCGGCGACAACCTGATGTACTCCTACGCGCTCCTCTACCTGCCGCTGTCGACGTACTCCCTCGTCTGCGCCACCCAGCTCTGCTTCAACGCCGTCTTCTCCTACTTCCTCAACAAGGAGAGGTTCACCGCGCTCGTGCTCAACTCCGTCGTGCTGCTCACCTTCTCCGCCGCGCTCGTCGGCGTGAGCCACTCCTCGGAGGAGACCAACAGCAGCGTCCCGGAGGGCAAGTTCGCGCTGGGGTTCGTCCTGGCGCTGTCGGCGTCGGCGGCGTTCGCCCTGATCCTGTCCCTGATGCAGCTCACGTTCGACACGGTGCTCAGGAGCAACGCGGCACACGCCGTGCTGGAGCTGCAGCTCTGGAGCAACGCCGCCGCGTCGTGCGTGTCGGTGGCCGGGCTGTTCATCTCCGGCGAGTGGAGCTCCCTGACGGCGGAGATGGACGGGTACAAGAAGGGCGAGGTGGCCTACGGGATGACGCTGGCGTGGACGGCCATCTCGTGGCAGCTCGCCACGATGGGCATGGTGGGGCTCGTCGCGACGGTGTCGTCGCTGTTCACGAACGTGATCAGCACGGTGGGGATGCCGCTGTCGCCGATCATGGCGGTGATCTTCCTCGGCGACCGGATGGACGGTGCCAAAGTGATAGCCATGCTCATTGGCATCTGGGGATTCTTGTCCTACGTTTACCAGCACTACCTCGATGACGCCAAGAGCAAGAACACAGCTGGGTCAGCTGACGTCACACAAACTTCAGAAGCAAAACTCTGA
More
|
|||||||
| Protein seq | MTSTRPILLFILFLNLTMSDATEIQLQITGVRGQEDVVAESDKSTSRADGTAAAAAAAAPLPPVSSQRLRWWAVVLANIVFVLGGQSVATLLGRIYYDQGGGSLWLATVVQSCGAPLAVPLLLYFRRPEASPVARPPLLKIAAIYAGLGVLLAGDNLMYSYALLYLPLSTYSLVCATQLCFNAVFSYFLNKERFTALVLNSVVLLTFSAALVGVSHSSEETNSSVPEGKFALGFVLALSASAAFALILSLMQLTFDTVLRSNAAHAVLELQLWSNAAASCVSVAGLFISGEWSSLTAEMDGYKKGEVAYGMTLAWTAISWQLATMGMVGLVATVSSLFTNVISTVGMPLSPIMAVIFLGDRMDGAKVIAMLIGIWGFLSYVYQHYLDDAKSKNTAGSADVTQTSEAKL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.536818 | 0.987789 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0587400 | RBH | 0.860463 | 1.690950 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46380 | SBH | 2.530949 | 0.947062 | 0.830725 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0587400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024590 | SBH | 0.445679 | 0.0 | 2.384026 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025350 | SBH | 0.0 | 1.420205 | 2.526695 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025020 | RBH | 0.197524 | 0.958750 | 1.392251 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024810 | SBH | 0.035716 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0025020 | RBH | 1.215071 | 2.736213 | 6.961177 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0468900 | RBH | 1.352242 | 1.160088 | 2.485999 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023790 | SBH | 0.0 | 0.0 | 2.026182 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0472100 | SBH | 1.719354 | 1.007842 | 0.126853 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024260 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024070 | SBH | 0.080423 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024180 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024600 | SBH | 0.303118 | 0.0 | 0.582672 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024800 | SBH | 0.088175 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024030 | RBH | 0.328011 | 0.0 | 1.062246 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023950 | RBH | 0.203271 | 0.000000 | 9.116659 |
